data_1ZYR # _model_server_result.job_id O006NaOhHqDEdYH4s5V4KQ _model_server_result.datetime_utc '2024-11-16 06:23:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zyr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":9901}' # _entry.id 1ZYR # _exptl.entry_id 1ZYR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1ZYR _cell.length_a 237 _cell.length_b 237 _cell.length_c 250 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZYR _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,M,N,O,P 1 1 G,H,I,J,K,L,Q,R,S,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 P N N ? 8 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 1194 D CYS 1194 1_555 D SG CYS 1204 D CYS 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf2 J SG CYS 1112 N CYS 1112 1_555 J SG CYS 1204 N CYS 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? disulf ? disulf3 J SG CYS 1201 N CYS 1201 1_555 J SG CYS 1204 N CYS 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 D SG CYS 58 D CYS 58 1_555 N ZN ZN . D ZN 9001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc2 D SG CYS 60 D CYS 60 1_555 N ZN ZN . D ZN 9001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.9 ? metalc ? metalc3 D SG CYS 76 D CYS 76 1_555 N ZN ZN . D ZN 9001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? metalc ? metalc4 D OD1 ASP 739 D ASP 739 1_555 P MG MG . D MG 9901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc5 D OD2 ASP 741 D ASP 741 1_555 P MG MG . D MG 9901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc6 D OG1 THR 1196 D THR 1196 1_555 O ZN ZN . D ZN 9002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc7 J SG CYS 60 N CYS 60 1_555 R ZN ZN . N ZN 9003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc8 J SG CYS 73 N CYS 73 1_555 R ZN ZN . N ZN 9003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc9 J OD1 ASP 739 N ASP 739 1_555 T MG MG . N MG 9902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc10 J OD1 ASP 741 N ASP 741 1_555 T MG MG . N MG 9902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc11 J OD1 ASP 743 N ASP 743 1_555 T MG MG . N MG 9902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc12 J OD2 ASP 743 N ASP 743 1_555 T MG MG . N MG 9902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? metalc ? metalc13 J SG CYS 1112 N CYS 1112 1_555 S ZN ZN . N ZN 9004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc14 J SG CYS 1204 N CYS 1204 1_555 S ZN ZN . N ZN 9004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1ZYR _atom_sites.fract_transf_matrix[1][1] 0.004219 _atom_sites.fract_transf_matrix[1][2] 0.002436 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004872 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 6 STD D 1 1525 1 STD STD . N 7 ZN D 1 9001 9001 ZN ZN . O 7 ZN D 1 9002 9002 ZN ZN . P 8 MG D 1 9901 9901 MG MG . Q 6 STD M 1 1120 2 STD STD . R 7 ZN N 1 9003 9003 ZN ZN . S 7 ZN N 1 9004 9004 ZN ZN . T 8 MG N 1 9902 9902 MG MG . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id P _atom_site.label_entity_id 8 _atom_site.Cartn_x -19.697 _atom_site.Cartn_y -31.887 _atom_site.Cartn_z 0.864 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 9901 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 83 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #