data_1ZYU
#
_model_server_result.job_id            iGg7VH006JOEKTK-5W9jZQ 
_model_server_result.datetime_utc      '2024-11-23 20:37:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1zyu 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    1ZYU 
#
_exptl.entry_id    1ZYU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              174.151 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1ZYU 
_cell.length_a            59.954 
_cell.length_b            59.954 
_cell.length_c            102.666 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ZYU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C7 H10 O5' 
_chem_comp.formula_weight    174.151 
_chem_comp.id                SKM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     SHIKIMATE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 C8 SKM sing 328 n n 
O12 H12 SKM sing 329 n n 
C8 C6 SKM sing 330 n n 
C8 C9 SKM sing 331 n n 
C8 H8 SKM sing 332 n n 
C6 O7 SKM sing 333 n n 
C6 C5 SKM sing 334 n n 
C6 H6 SKM sing 335 n n 
O7 HO7 SKM sing 336 n n 
C5 C4 SKM sing 337 n n 
C5 H51 SKM sing 338 n n 
C5 H52 SKM sing 339 n n 
C4 C1 SKM sing 340 n n 
C4 C10 SKM doub 341 n n 
C1 O2 SKM sing 342 n n 
C1 O3 SKM doub 343 n n 
O2 HO2 SKM sing 344 n n 
C10 C9 SKM sing 345 n n 
C10 H10 SKM sing 346 n n 
C9 O11 SKM sing 347 n n 
C9 H9 SKM sing 348 n n 
O11 H11 SKM sing 349 n n 
#
_atom_sites.entry_id                     1ZYU 
_atom_sites.fract_transf_matrix[1][1]    0.016679 
_atom_sites.fract_transf_matrix[1][2]    0.00963 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01926 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00974 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ACP A 1 180 180 ACP ACP . 
C 3 SKM A 1 401 401 SKM SKM . 
D 4 HOH A 1 402 1 HOH HOH . 
D 4 HOH A 2 403 2 HOH HOH . 
D 4 HOH A 3 404 3 HOH HOH . 
D 4 HOH A 4 405 4 HOH HOH . 
D 4 HOH A 5 406 5 HOH HOH . 
D 4 HOH A 6 407 6 HOH HOH . 
D 4 HOH A 7 408 7 HOH HOH . 
D 4 HOH A 8 409 8 HOH HOH . 
D 4 HOH A 9 410 9 HOH HOH . 
D 4 HOH A 10 411 10 HOH HOH . 
D 4 HOH A 11 412 11 HOH HOH . 
D 4 HOH A 12 413 12 HOH HOH . 
D 4 HOH A 13 414 13 HOH HOH . 
D 4 HOH A 14 415 14 HOH HOH . 
D 4 HOH A 15 416 15 HOH HOH . 
D 4 HOH A 16 417 16 HOH HOH . 
D 4 HOH A 17 418 17 HOH HOH . 
D 4 HOH A 18 419 18 HOH HOH . 
D 4 HOH A 19 420 19 HOH HOH . 
D 4 HOH A 20 421 20 HOH HOH . 
D 4 HOH A 21 422 21 HOH HOH . 
D 4 HOH A 22 423 22 HOH HOH . 
D 4 HOH A 23 424 23 HOH HOH . 
D 4 HOH A 24 425 24 HOH HOH . 
D 4 HOH A 25 426 25 HOH HOH . 
D 4 HOH A 26 427 26 HOH HOH . 
D 4 HOH A 27 428 27 HOH HOH . 
D 4 HOH A 28 429 28 HOH HOH . 
D 4 HOH A 29 430 29 HOH HOH . 
D 4 HOH A 30 431 30 HOH HOH . 
D 4 HOH A 31 432 31 HOH HOH . 
D 4 HOH A 32 433 32 HOH HOH . 
D 4 HOH A 33 434 33 HOH HOH . 
D 4 HOH A 34 435 34 HOH HOH . 
D 4 HOH A 35 436 35 HOH HOH . 
D 4 HOH A 36 437 36 HOH HOH . 
D 4 HOH A 37 438 37 HOH HOH . 
D 4 HOH A 38 439 38 HOH HOH . 
D 4 HOH A 39 440 39 HOH HOH . 
D 4 HOH A 40 441 40 HOH HOH . 
D 4 HOH A 41 442 41 HOH HOH . 
D 4 HOH A 42 443 42 HOH HOH . 
D 4 HOH A 43 444 43 HOH HOH . 
D 4 HOH A 44 445 44 HOH HOH . 
D 4 HOH A 45 446 45 HOH HOH . 
D 4 HOH A 46 447 46 HOH HOH . 
D 4 HOH A 47 448 47 HOH HOH . 
D 4 HOH A 48 449 48 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O12 SKM . . . C 3 -0.598 38.293 52.527 1 75.09 ? O12 SKM 401 A 1 
HETATM 2 C C8 SKM . . . C 3 -0.527 37.646 53.805 1 76.43 ? C8 SKM 401 A 1 
HETATM 3 C C6 SKM . . . C 3 -1.794 37.988 54.615 1 74.29 ? C6 SKM 401 A 1 
HETATM 4 O O7 SKM . . . C 3 -1.703 37.359 55.897 1 72.18 ? O7 SKM 401 A 1 
HETATM 5 C C5 SKM . . . C 3 -3.081 37.477 53.921 1 71.24 ? C5 SKM 401 A 1 
HETATM 6 C C4 SKM . . . C 3 -2.934 36.091 53.269 1 73.92 ? C4 SKM 401 A 1 
HETATM 7 C C1 SKM . . . C 3 -4.163 35.396 52.795 1 72.03 ? C1 SKM 401 A 1 
HETATM 8 O O2 SKM . . . C 3 -4.362 34.197 53.005 1 69.33 ? O2 SKM 401 A 1 
HETATM 9 O O3 SKM . . . C 3 -5.118 36.056 52.112 1 67.58 ? O3 SKM 401 A 1 
HETATM 10 C C10 SKM . . . C 3 -1.714 35.487 53.109 1 72.72 ? C10 SKM 401 A 1 
HETATM 11 C C9 SKM . . . C 3 -0.408 36.119 53.558 1 76.21 ? C9 SKM 401 A 1 
HETATM 12 O O11 SKM . . . C 3 0.589 35.899 52.56 1 80.7 ? O11 SKM 401 A 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           12 
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