data_227D # _model_server_result.job_id QzmFQjEjbZiEWrT5aCGlSQ _model_server_result.datetime_utc '2024-10-18 15:26:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 227d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":25}' # _entry.id 227D # _exptl.entry_id 227D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.362 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,5-BIS(4-GUANYLPHENYL)FURAN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 227D _cell.length_a 25.28 _cell.length_b 40.69 _cell.length_c 66.73 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 227D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 3 A DC 3 1_555 B N1 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 3 A DC 3 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 3 A DC 3 1_555 B N2 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DG 4 A DG 4 1_555 B N3 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 DG 4 A DG 4 1_555 B O2 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 DG 4 A DG 4 1_555 B N4 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DA 5 A DA 5 1_555 B N3 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N6 DA 5 A DA 5 1_555 B O4 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DA 6 A DA 6 1_555 B N3 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N6 DA 6 A DA 6 1_555 B O4 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N3 DT 7 A DT 7 1_555 B N1 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O4 DT 7 A DT 7 1_555 B N6 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 DT 8 A DT 8 1_555 B N1 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O4 DT 8 A DT 8 1_555 B N6 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 DC 9 A DC 9 1_555 B N1 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N4 DC 9 A DC 9 1_555 B O6 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O2 DC 9 A DC 9 1_555 B N2 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N1 DG 10 A DG 10 1_555 B N3 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N2 DG 10 A DG 10 1_555 B O2 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O6 DG 10 A DG 10 1_555 B N4 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N3 DC 11 A DC 11 1_555 B N1 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N4 DC 11 A DC 11 1_555 B O6 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O2 DC 11 A DC 11 1_555 B N2 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N1 DG 12 A DG 12 1_555 B N3 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N2 DG 12 A DG 12 1_555 B O2 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O6 DG 12 A DG 12 1_555 B N4 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C18 H18 N4 O 2' _chem_comp.formula_weight 306.362 _chem_comp.id BGF _chem_comp.mon_nstd_flag . _chem_comp.name 2,5-BIS(4-GUANYLPHENYL)FURAN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA CB BGF doub 1 n y CA O1 BGF sing 2 n y CA C1 BGF sing 3 n y CB CB' BGF sing 4 n y CB HB BGF sing 5 n n CB' CA' BGF doub 6 n y CB' HB' BGF sing 7 n n CA' O1 BGF sing 8 n y CA' C1' BGF sing 9 n y C1 C2 BGF doub 10 n y C1 C6 BGF sing 11 n y C2 C3 BGF sing 12 n y C2 H2 BGF sing 13 n n C3 C4 BGF doub 14 n y C3 H3 BGF sing 15 n n C4 C5 BGF sing 16 n y C4 C7 BGF sing 17 n n C5 C6 BGF doub 18 n y C5 H5 BGF sing 19 n n C6 H6 BGF sing 20 n n C7 N1 BGF sing 21 n n C7 N2 BGF doub 22 n n N1 HN11 BGF sing 23 n n N1 HN12 BGF sing 24 n n N2 HN21 BGF sing 25 n n N2 HN22 BGF sing 26 n n C1' C2' BGF doub 27 n y C1' C6' BGF sing 28 n y C2' C3' BGF sing 29 n y C2' H2' BGF sing 30 n n C3' C4' BGF doub 31 n y C3' H3' BGF sing 32 n n C4' C5' BGF sing 33 n y C4' C7' BGF sing 34 n n C5' C6' BGF doub 35 n y C5' H5' BGF sing 36 n n C6' H6' BGF sing 37 n n C7' N1' BGF sing 38 n n C7' N2' BGF doub 39 n n N1' "H1'1" BGF sing 40 n n N1' "H1'2" BGF sing 41 n n N2' "H2'1" BGF sing 42 n n N2' "H2'2" BGF sing 43 n n # _atom_sites.entry_id 227D _atom_sites.fract_transf_matrix[1][1] 0.039557 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024576 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014986 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BGF A 1 25 25 BGF BGF . D 3 HOH A 1 27 27 HOH HOH . D 3 HOH A 2 29 29 HOH HOH . D 3 HOH A 3 30 30 HOH HOH . D 3 HOH A 4 31 31 HOH HOH . D 3 HOH A 5 33 33 HOH HOH . D 3 HOH A 6 34 34 HOH HOH . D 3 HOH A 7 40 40 HOH HOH . D 3 HOH A 8 41 41 HOH HOH . D 3 HOH A 9 42 42 HOH HOH . D 3 HOH A 10 43 43 HOH HOH . D 3 HOH A 11 47 47 HOH HOH . D 3 HOH A 12 49 49 HOH HOH . D 3 HOH A 13 50 50 HOH HOH . D 3 HOH A 14 51 51 HOH HOH . D 3 HOH A 15 52 52 HOH HOH . D 3 HOH A 16 53 53 HOH HOH . D 3 HOH A 17 55 55 HOH HOH . D 3 HOH A 18 56 56 HOH HOH . D 3 HOH A 19 57 57 HOH HOH . D 3 HOH A 20 58 58 HOH HOH . D 3 HOH A 21 59 59 HOH HOH . D 3 HOH A 22 63 63 HOH HOH . D 3 HOH A 23 64 64 HOH HOH . D 3 HOH A 24 65 65 HOH HOH . D 3 HOH A 25 66 66 HOH HOH . D 3 HOH A 26 67 67 HOH HOH . D 3 HOH A 27 69 69 HOH HOH . D 3 HOH A 28 70 70 HOH HOH . D 3 HOH A 29 71 71 HOH HOH . D 3 HOH A 30 73 73 HOH HOH . D 3 HOH A 31 74 74 HOH HOH . D 3 HOH A 32 76 76 HOH HOH . D 3 HOH A 33 77 77 HOH HOH . D 3 HOH A 34 79 79 HOH HOH . E 3 HOH B 1 26 26 HOH HOH . E 3 HOH B 2 28 28 HOH HOH . E 3 HOH B 3 32 32 HOH HOH . E 3 HOH B 4 35 35 HOH HOH . E 3 HOH B 5 36 36 HOH HOH . E 3 HOH B 6 37 37 HOH HOH . E 3 HOH B 7 38 38 HOH HOH . E 3 HOH B 8 39 39 HOH HOH . E 3 HOH B 9 44 44 HOH HOH . E 3 HOH B 10 45 45 HOH HOH . E 3 HOH B 11 46 46 HOH HOH . E 3 HOH B 12 48 48 HOH HOH . E 3 HOH B 13 54 54 HOH HOH . E 3 HOH B 14 60 60 HOH HOH . E 3 HOH B 15 61 61 HOH HOH . E 3 HOH B 16 62 62 HOH HOH . E 3 HOH B 17 68 68 HOH HOH . E 3 HOH B 18 72 72 HOH HOH . E 3 HOH B 19 75 75 HOH HOH . E 3 HOH B 20 78 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA BGF . . . C 2 8.038 23.66 8.401 1 39.27 ? CA BGF 25 A 1 HETATM 2 C CB BGF . . . C 2 6.73 23.97 8.771 1 43.6 ? CB BGF 25 A 1 HETATM 3 C CB' BGF . . . C 2 6.37 23.222 9.971 1 42.3 ? CB' BGF 25 A 1 HETATM 4 C CA' BGF . . . C 2 7.5 22.496 10.264 1 38.97 ? CA' BGF 25 A 1 HETATM 5 O O1 BGF . . . C 2 8.542 22.736 9.315 1 44.21 ? O1 BGF 25 A 1 HETATM 6 C C1 BGF . . . C 2 8.899 24.09 7.321 1 34.66 ? C1 BGF 25 A 1 HETATM 7 C C2 BGF . . . C 2 10.103 23.449 7.036 1 34.74 ? C2 BGF 25 A 1 HETATM 8 C C3 BGF . . . C 2 10.877 23.842 5.923 1 32.91 ? C3 BGF 25 A 1 HETATM 9 C C4 BGF . . . C 2 10.469 24.887 5.067 1 37.47 ? C4 BGF 25 A 1 HETATM 10 C C5 BGF . . . C 2 9.261 25.533 5.375 1 39.15 ? C5 BGF 25 A 1 HETATM 11 C C6 BGF . . . C 2 8.503 25.122 6.488 1 39.03 ? C6 BGF 25 A 1 HETATM 12 C C7 BGF . . . C 2 11.227 25.3 3.844 1 36.43 ? C7 BGF 25 A 1 HETATM 13 N N1 BGF . . . C 2 12.051 24.498 3.198 1 40.36 ? N1 BGF 25 A 1 HETATM 14 N N2 BGF . . . C 2 11.124 26.489 3.296 1 38.41 ? N2 BGF 25 A 1 HETATM 15 C C1' BGF . . . C 2 7.832 21.6 11.32 1 34.82 ? C1' BGF 25 A 1 HETATM 16 C C2' BGF . . . C 2 9.185 21.235 11.405 1 31.92 ? C2' BGF 25 A 1 HETATM 17 C C3' BGF . . . C 2 9.655 20.43 12.435 1 32.07 ? C3' BGF 25 A 1 HETATM 18 C C4' BGF . . . C 2 8.779 19.956 13.418 1 35.95 ? C4' BGF 25 A 1 HETATM 19 C C5' BGF . . . C 2 7.402 20.307 13.337 1 37.67 ? C5' BGF 25 A 1 HETATM 20 C C6' BGF . . . C 2 6.922 21.137 12.279 1 35.89 ? C6' BGF 25 A 1 HETATM 21 C C7' BGF . . . C 2 9.368 19.137 14.516 1 39.05 ? C7' BGF 25 A 1 HETATM 22 N N1' BGF . . . C 2 10.684 19.19 14.773 1 38.51 ? N1' BGF 25 A 1 HETATM 23 N N2' BGF . . . C 2 8.606 18.351 15.291 1 37.72 ? N2' BGF 25 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #