data_246D
#
_model_server_result.job_id            cJ4hysvVbmDqdnfDL7e42Q 
_model_server_result.datetime_utc      '2024-10-18 14:29:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          246d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":17}' 
#
_entry.id    246D 
#
_exptl.entry_id    246D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            246D 
_cell.length_a            43.1 
_cell.length_b            43.1 
_cell.length_c            59.4 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 246D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B O2' A 3 B A 11 1_555 C NA NA . B NA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc2 C NA NA . B NA 17 1_555 F O HOH . B HOH 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? 
metalc ? metalc3 D NA NA . B NA 18 1_555 F O HOH . B HOH 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc4 D NA NA . B NA 18 1_555 F O HOH . B HOH 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
hydrog WATSON-CRICK hydrog1 A N1 G 1 A G 1 1_555 B N3 DC 8 B DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N2 G 1 A G 1 1_555 B O2 DC 8 B DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O6 G 1 A G 1 1_555 B N4 DC 8 B DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N3 U 2 A U 2 1_555 B N1 A 7 B A 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A O4 U 2 A U 2 1_555 B N6 A 7 B A 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A N1 A 3 A A 3 1_555 B N3 U 6 B U 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N6 A 3 A A 3 1_555 B O4 U 6 B U 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N3 U 4 A U 4 1_555 B N1 A 5 B A 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A O4 U 4 A U 4 1_555 B N6 A 5 B A 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'A-U PAIR' hydrog10 A N1 A 5 A A 5 1_555 B N3 U 4 B U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N3 U 6 A U 6 1_555 B N1 A 3 B A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A O4 U 6 A U 6 1_555 B N6 A 3 B A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N1 A 7 A A 7 1_555 B N3 U 2 B U 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N6 A 7 A A 7 1_555 B O4 U 2 B U 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A N3 DC 8 A DC 8 1_555 B N1 G 1 B G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N4 DC 8 A DC 8 1_555 B O6 G 1 B G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A O2 DC 8 A DC 8 1_555 B N2 G 1 B G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     246D 
_atom_sites.fract_transf_matrix[1][1]    0.023202 
_atom_sites.fract_transf_matrix[1][2]    0.013396 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.026791 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016835 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA B 1 17 17 NA NA . 
D 2 NA B 1 18 18 NA NA . 
E 3 HOH A 1 20 20 HOH HOH . 
E 3 HOH A 2 21 21 HOH HOH . 
E 3 HOH A 3 22 22 HOH HOH . 
E 3 HOH A 4 25 25 HOH HOH . 
E 3 HOH A 5 31 31 HOH HOH . 
E 3 HOH A 6 32 32 HOH HOH . 
E 3 HOH A 7 37 37 HOH HOH . 
E 3 HOH A 8 46 46 HOH HOH . 
E 3 HOH A 9 50 50 HOH HOH . 
E 3 HOH A 10 51 51 HOH HOH . 
E 3 HOH A 11 53 53 HOH HOH . 
E 3 HOH A 12 60 60 HOH HOH . 
E 3 HOH A 13 61 61 HOH HOH . 
E 3 HOH A 14 63 63 HOH HOH . 
E 3 HOH A 15 66 66 HOH HOH . 
E 3 HOH A 16 68 68 HOH HOH . 
E 3 HOH A 17 74 74 HOH HOH . 
E 3 HOH A 18 76 76 HOH HOH . 
E 3 HOH A 19 79 79 HOH HOH . 
E 3 HOH A 20 81 81 HOH HOH . 
E 3 HOH A 21 82 82 HOH HOH . 
E 3 HOH A 22 84 84 HOH HOH . 
E 3 HOH A 23 86 86 HOH HOH . 
E 3 HOH A 24 88 88 HOH HOH . 
E 3 HOH A 25 89 89 HOH HOH . 
E 3 HOH A 26 90 90 HOH HOH . 
E 3 HOH A 27 91 91 HOH HOH . 
E 3 HOH A 28 97 97 HOH HOH . 
E 3 HOH A 29 98 98 HOH HOH . 
E 3 HOH A 30 99 99 HOH HOH . 
E 3 HOH A 31 100 100 HOH HOH . 
E 3 HOH A 32 103 103 HOH HOH . 
F 3 HOH B 1 19 19 HOH HOH . 
F 3 HOH B 2 23 23 HOH HOH . 
F 3 HOH B 3 24 24 HOH HOH . 
F 3 HOH B 4 26 26 HOH HOH . 
F 3 HOH B 5 27 27 HOH HOH . 
F 3 HOH B 6 28 28 HOH HOH . 
F 3 HOH B 7 29 29 HOH HOH . 
F 3 HOH B 8 30 30 HOH HOH . 
F 3 HOH B 9 33 33 HOH HOH . 
F 3 HOH B 10 34 34 HOH HOH . 
F 3 HOH B 11 35 35 HOH HOH . 
F 3 HOH B 12 36 36 HOH HOH . 
F 3 HOH B 13 38 38 HOH HOH . 
F 3 HOH B 14 39 39 HOH HOH . 
F 3 HOH B 15 40 40 HOH HOH . 
F 3 HOH B 16 41 41 HOH HOH . 
F 3 HOH B 17 42 42 HOH HOH . 
F 3 HOH B 18 43 43 HOH HOH . 
F 3 HOH B 19 44 44 HOH HOH . 
F 3 HOH B 20 45 45 HOH HOH . 
F 3 HOH B 21 47 47 HOH HOH . 
F 3 HOH B 22 48 48 HOH HOH . 
F 3 HOH B 23 49 49 HOH HOH . 
F 3 HOH B 24 52 52 HOH HOH . 
F 3 HOH B 25 54 54 HOH HOH . 
F 3 HOH B 26 55 55 HOH HOH . 
F 3 HOH B 27 56 56 HOH HOH . 
F 3 HOH B 28 57 57 HOH HOH . 
F 3 HOH B 29 58 58 HOH HOH . 
F 3 HOH B 30 59 59 HOH HOH . 
F 3 HOH B 31 62 62 HOH HOH . 
F 3 HOH B 32 64 64 HOH HOH . 
F 3 HOH B 33 65 65 HOH HOH . 
F 3 HOH B 34 67 67 HOH HOH . 
F 3 HOH B 35 69 69 HOH HOH . 
F 3 HOH B 36 70 70 HOH HOH . 
F 3 HOH B 37 71 71 HOH HOH . 
F 3 HOH B 38 72 72 HOH HOH . 
F 3 HOH B 39 73 73 HOH HOH . 
F 3 HOH B 40 75 75 HOH HOH . 
F 3 HOH B 41 77 77 HOH HOH . 
F 3 HOH B 42 78 78 HOH HOH . 
F 3 HOH B 43 80 80 HOH HOH . 
F 3 HOH B 44 83 83 HOH HOH . 
F 3 HOH B 45 85 85 HOH HOH . 
F 3 HOH B 46 87 87 HOH HOH . 
F 3 HOH B 47 92 92 HOH HOH . 
F 3 HOH B 48 93 93 HOH HOH . 
F 3 HOH B 49 94 94 HOH HOH . 
F 3 HOH B 50 95 95 HOH HOH . 
F 3 HOH B 51 96 96 HOH HOH . 
F 3 HOH B 52 101 101 HOH HOH . 
F 3 HOH B 53 102 102 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               43.071 
_atom_site.Cartn_y               0 
_atom_site.Cartn_z               -2.8 
_atom_site.occupancy             0.33 
_atom_site.B_iso_or_equiv        2 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           17 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#