data_248L # _model_server_result.job_id 8E_lQQ8F_O70Z-ATOZDrqg _model_server_result.datetime_utc '2024-11-26 23:04:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 248l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":170}' # _entry.id 248L # _exptl.entry_id 248L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-HYDROXYETHYL DISULFIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 248L _cell.length_a 61 _cell.length_b 61 _cell.length_c 97 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 248L _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id HED _chem_comp.mon_nstd_flag . _chem_comp.name '2-HYDROXYETHYL DISULFIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 HED sing 129 n n C1 C2 HED sing 130 n n C1 H11 HED sing 131 n n C1 H12 HED sing 132 n n O1 HO1 HED sing 133 n n C2 S3 HED sing 134 n n C2 H21 HED sing 135 n n C2 H22 HED sing 136 n n S3 S4 HED sing 137 n n S4 C5 HED sing 138 n n C5 C6 HED sing 139 n n C5 H51 HED sing 140 n n C5 H52 HED sing 141 n n C6 O6 HED sing 142 n n C6 H61 HED sing 143 n n C6 H62 HED sing 144 n n O6 HO6 HED sing 145 n n # _atom_sites.entry_id 248L _atom_sites.fract_transf_matrix[1][1] 0.016393 _atom_sites.fract_transf_matrix[1][2] 0.009465 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01893 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010309 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 173 173 CL CL . C 2 CL A 1 178 178 CL CL . D 3 HED A 1 170 170 HED HED . E 4 HOH A 1 171 171 HOH HOH . E 4 HOH A 2 172 172 HOH HOH . E 4 HOH A 3 174 174 HOH HOH . E 4 HOH A 4 175 175 HOH HOH . E 4 HOH A 5 177 177 HOH HOH . E 4 HOH A 6 179 179 HOH HOH . E 4 HOH A 7 180 180 HOH HOH . E 4 HOH A 8 181 181 HOH HOH . E 4 HOH A 9 182 182 HOH HOH . E 4 HOH A 10 183 183 HOH HOH . E 4 HOH A 11 184 184 HOH HOH . E 4 HOH A 12 185 185 HOH HOH . E 4 HOH A 13 186 186 HOH HOH . E 4 HOH A 14 187 187 HOH HOH . E 4 HOH A 15 188 188 HOH HOH . E 4 HOH A 16 189 189 HOH HOH . E 4 HOH A 17 190 190 HOH HOH . E 4 HOH A 18 191 191 HOH HOH . E 4 HOH A 19 192 192 HOH HOH . E 4 HOH A 20 193 193 HOH HOH . E 4 HOH A 21 194 194 HOH HOH . E 4 HOH A 22 195 195 HOH HOH . E 4 HOH A 23 196 196 HOH HOH . E 4 HOH A 24 197 197 HOH HOH . E 4 HOH A 25 198 198 HOH HOH . E 4 HOH A 26 200 200 HOH HOH . E 4 HOH A 27 201 201 HOH HOH . E 4 HOH A 28 202 202 HOH HOH . E 4 HOH A 29 203 203 HOH HOH . E 4 HOH A 30 204 204 HOH HOH . E 4 HOH A 31 206 206 HOH HOH . E 4 HOH A 32 207 207 HOH HOH . E 4 HOH A 33 208 208 HOH HOH . E 4 HOH A 34 209 209 HOH HOH . E 4 HOH A 35 210 210 HOH HOH . E 4 HOH A 36 211 211 HOH HOH . E 4 HOH A 37 213 213 HOH HOH . E 4 HOH A 38 214 214 HOH HOH . E 4 HOH A 39 215 215 HOH HOH . E 4 HOH A 40 216 216 HOH HOH . E 4 HOH A 41 217 217 HOH HOH . E 4 HOH A 42 218 218 HOH HOH . E 4 HOH A 43 219 219 HOH HOH . E 4 HOH A 44 220 220 HOH HOH . E 4 HOH A 45 221 221 HOH HOH . E 4 HOH A 46 222 222 HOH HOH . E 4 HOH A 47 223 223 HOH HOH . E 4 HOH A 48 224 224 HOH HOH . E 4 HOH A 49 225 225 HOH HOH . E 4 HOH A 50 226 226 HOH HOH . E 4 HOH A 51 228 228 HOH HOH . E 4 HOH A 52 229 229 HOH HOH . E 4 HOH A 53 230 230 HOH HOH . E 4 HOH A 54 231 231 HOH HOH . E 4 HOH A 55 232 232 HOH HOH . E 4 HOH A 56 233 233 HOH HOH . E 4 HOH A 57 234 234 HOH HOH . E 4 HOH A 58 235 235 HOH HOH . E 4 HOH A 59 236 236 HOH HOH . E 4 HOH A 60 237 237 HOH HOH . E 4 HOH A 61 238 238 HOH HOH . E 4 HOH A 62 239 239 HOH HOH . E 4 HOH A 63 240 240 HOH HOH . E 4 HOH A 64 242 242 HOH HOH . E 4 HOH A 65 244 244 HOH HOH . E 4 HOH A 66 245 245 HOH HOH . E 4 HOH A 67 246 246 HOH HOH . E 4 HOH A 68 247 247 HOH HOH . E 4 HOH A 69 248 248 HOH HOH . E 4 HOH A 70 249 249 HOH HOH . E 4 HOH A 71 250 250 HOH HOH . E 4 HOH A 72 251 251 HOH HOH . E 4 HOH A 73 253 253 HOH HOH . E 4 HOH A 74 254 254 HOH HOH . E 4 HOH A 75 256 256 HOH HOH . E 4 HOH A 76 257 257 HOH HOH . E 4 HOH A 77 258 258 HOH HOH . E 4 HOH A 78 259 259 HOH HOH . E 4 HOH A 79 260 260 HOH HOH . E 4 HOH A 80 262 262 HOH HOH . E 4 HOH A 81 263 263 HOH HOH . E 4 HOH A 82 265 265 HOH HOH . E 4 HOH A 83 266 266 HOH HOH . E 4 HOH A 84 267 267 HOH HOH . E 4 HOH A 85 268 268 HOH HOH . E 4 HOH A 86 269 269 HOH HOH . E 4 HOH A 87 270 270 HOH HOH . E 4 HOH A 88 271 271 HOH HOH . E 4 HOH A 89 272 272 HOH HOH . E 4 HOH A 90 273 273 HOH HOH . E 4 HOH A 91 274 274 HOH HOH . E 4 HOH A 92 275 275 HOH HOH . E 4 HOH A 93 276 276 HOH HOH . E 4 HOH A 94 277 277 HOH HOH . E 4 HOH A 95 278 278 HOH HOH . E 4 HOH A 96 279 279 HOH HOH . E 4 HOH A 97 280 280 HOH HOH . E 4 HOH A 98 281 281 HOH HOH . E 4 HOH A 99 282 282 HOH HOH . E 4 HOH A 100 283 283 HOH HOH . E 4 HOH A 101 284 284 HOH HOH . E 4 HOH A 102 285 285 HOH HOH . E 4 HOH A 103 286 286 HOH HOH . E 4 HOH A 104 288 288 HOH HOH . E 4 HOH A 105 290 290 HOH HOH . E 4 HOH A 106 293 293 HOH HOH . E 4 HOH A 107 294 294 HOH HOH . E 4 HOH A 108 295 295 HOH HOH . E 4 HOH A 109 296 296 HOH HOH . E 4 HOH A 110 297 297 HOH HOH . E 4 HOH A 111 298 298 HOH HOH . E 4 HOH A 112 299 299 HOH HOH . E 4 HOH A 113 300 300 HOH HOH . E 4 HOH A 114 302 302 HOH HOH . E 4 HOH A 115 303 303 HOH HOH . E 4 HOH A 116 304 304 HOH HOH . E 4 HOH A 117 306 306 HOH HOH . E 4 HOH A 118 307 307 HOH HOH . E 4 HOH A 119 308 308 HOH HOH . E 4 HOH A 120 309 309 HOH HOH . E 4 HOH A 121 311 311 HOH HOH . E 4 HOH A 122 312 312 HOH HOH . E 4 HOH A 123 314 314 HOH HOH . E 4 HOH A 124 316 316 HOH HOH . E 4 HOH A 125 317 317 HOH HOH . E 4 HOH A 126 321 321 HOH HOH . E 4 HOH A 127 323 323 HOH HOH . E 4 HOH A 128 324 324 HOH HOH . E 4 HOH A 129 325 325 HOH HOH . E 4 HOH A 130 326 326 HOH HOH . E 4 HOH A 131 327 327 HOH HOH . E 4 HOH A 132 328 328 HOH HOH . E 4 HOH A 133 329 329 HOH HOH . E 4 HOH A 134 331 331 HOH HOH . E 4 HOH A 135 332 332 HOH HOH . E 4 HOH A 136 333 333 HOH HOH . E 4 HOH A 137 334 334 HOH HOH . E 4 HOH A 138 347 347 HOH HOH . E 4 HOH A 139 349 349 HOH HOH . E 4 HOH A 140 353 353 HOH HOH . E 4 HOH A 141 361 361 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HED . . . D 3 31.856 -1.247 15.12 1 27.29 ? C1 HED 170 A 1 HETATM 2 O O1 HED . . . D 3 32.96 -1.013 15.995 1 71.12 ? O1 HED 170 A 1 HETATM 3 C C2 HED . . . D 3 32.204 -0.561 13.83 1 40.34 ? C2 HED 170 A 1 HETATM 4 S S3 HED . . . D 3 33.727 -1.269 13.198 1 47.39 ? S3 HED 170 A 1 HETATM 5 S S4 HED . . . D 3 33.831 -0.687 11.237 1 96.82 ? S4 HED 170 A 1 HETATM 6 C C5 HED . . . D 3 32.884 -1.986 10.367 1 57.03 ? C5 HED 170 A 1 HETATM 7 C C6 HED . . . D 3 33.772 -3.066 9.708 1 86.6 ? C6 HED 170 A 1 HETATM 8 O O6 HED . . . D 3 34.765 -2.446 8.897 1 57.57 ? O6 HED 170 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 8 #