data_258D
#
_model_server_result.job_id            ngITuY-kV5z8RCM_GB1Z2A 
_model_server_result.datetime_utc      '2024-10-18 15:30:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          258d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":32}' 
#
_entry.id    258D 
#
_exptl.entry_id    258D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              59.044 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ACETATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            258D 
_cell.length_a            26.3 
_cell.length_b            51.98 
_cell.length_c            67.08 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 258D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,M,N 1 1 
C,D,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B N7 DA 6 B DA 12 1_555 H NA NA . B NA 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? 
hydrog WATSON-CRICK hydrog1 A N3 DT 1 A DT 1 1_555 B N1 DA 6 B DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A O4 DT 1 A DT 1 1_555 B N6 DA 6 B DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A N1 DG 2 A DG 2 1_555 B N3 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N2 DG 2 A DG 2 1_555 B O2 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A O6 DG 2 A DG 2 1_555 B N4 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A N3 DT 3 A DT 3 1_555 B N1 DA 4 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A O4 DT 3 A DT 3 1_555 B N6 DA 4 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N1 DA 4 A DA 4 1_555 B N3 DT 3 B DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A N6 DA 4 A DA 4 1_555 B O4 DT 3 B DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N3 DC 5 A DC 5 1_555 B N1 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N4 DC 5 A DC 5 1_555 B O6 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A O2 DC 5 A DC 5 1_555 B N2 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N1 DA 6 A DA 6 1_555 B N3 DT 1 B DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N6 DA 6 A DA 6 1_555 B O4 DT 1 B DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 C N3 DT 1 C DT 13 1_555 D N1 DA 6 D DA 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 C O4 DT 1 C DT 13 1_555 D N6 DA 6 D DA 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 C N1 DG 2 C DG 14 1_555 D N3 DC 5 D DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 C N2 DG 2 C DG 14 1_555 D O2 DC 5 D DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 C O6 DG 2 C DG 14 1_555 D N4 DC 5 D DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 C N3 DT 3 C DT 15 1_555 D N1 DA 4 D DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 C O4 DT 3 C DT 15 1_555 D N6 DA 4 D DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 C N1 DA 4 C DA 16 1_555 D N3 DT 3 D DT 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 C N6 DA 4 C DA 16 1_555 D O4 DT 3 D DT 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 C N3 DC 5 C DC 17 1_555 D N1 DG 2 D DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 C N4 DC 5 C DC 17 1_555 D O6 DG 2 D DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 C O2 DC 5 C DC 17 1_555 D N2 DG 2 D DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog27 C N1 DA 6 C DA 18 1_555 D N3 DT 1 D DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog28 C N6 DA 6 C DA 18 1_555 D O4 DT 1 D DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C2 H3 O2 -1' 
_chem_comp.formula_weight    59.044 
_chem_comp.id                ACT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ACETATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     258D 
_atom_sites.fract_transf_matrix[1][1]    0.038023 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019238 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014908 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NGM A 1 26 26 NGM NGM . 
F 3 SPM A 1 29 29 SPM SPM . 
G 2 NGM B 1 25 25 NGM NGM . 
H 4 NA B 1 30 30 NA NA . 
I 5 ACT B 1 31 31 ACT ACT . 
J 5 ACT B 1 32 32 ACT ACT . 
K 2 NGM C 1 28 28 NGM NGM . 
L 2 NGM D 1 27 27 NGM NGM . 
M 6 HOH A 1 32 32 HOH HOH . 
M 6 HOH A 2 34 34 HOH HOH . 
M 6 HOH A 3 39 39 HOH HOH . 
M 6 HOH A 4 44 44 HOH HOH . 
M 6 HOH A 5 48 48 HOH HOH . 
M 6 HOH A 6 49 49 HOH HOH . 
M 6 HOH A 7 57 57 HOH HOH . 
M 6 HOH A 8 58 58 HOH HOH . 
M 6 HOH A 9 59 59 HOH HOH . 
M 6 HOH A 10 60 60 HOH HOH . 
M 6 HOH A 11 61 61 HOH HOH . 
M 6 HOH A 12 64 64 HOH HOH . 
M 6 HOH A 13 65 65 HOH HOH . 
M 6 HOH A 14 72 72 HOH HOH . 
M 6 HOH A 15 77 77 HOH HOH . 
M 6 HOH A 16 87 87 HOH HOH . 
M 6 HOH A 17 92 92 HOH HOH . 
M 6 HOH A 18 93 93 HOH HOH . 
M 6 HOH A 19 94 94 HOH HOH . 
M 6 HOH A 20 99 99 HOH HOH . 
M 6 HOH A 21 105 105 HOH HOH . 
M 6 HOH A 22 110 110 HOH HOH . 
M 6 HOH A 23 112 112 HOH HOH . 
M 6 HOH A 24 114 114 HOH HOH . 
M 6 HOH A 25 120 120 HOH HOH . 
N 6 HOH B 1 35 35 HOH HOH . 
N 6 HOH B 2 38 38 HOH HOH . 
N 6 HOH B 3 43 43 HOH HOH . 
N 6 HOH B 4 46 46 HOH HOH . 
N 6 HOH B 5 47 47 HOH HOH . 
N 6 HOH B 6 52 52 HOH HOH . 
N 6 HOH B 7 56 56 HOH HOH . 
N 6 HOH B 8 62 62 HOH HOH . 
N 6 HOH B 9 69 69 HOH HOH . 
N 6 HOH B 10 70 70 HOH HOH . 
N 6 HOH B 11 76 76 HOH HOH . 
N 6 HOH B 12 81 81 HOH HOH . 
N 6 HOH B 13 82 82 HOH HOH . 
N 6 HOH B 14 84 84 HOH HOH . 
N 6 HOH B 15 88 88 HOH HOH . 
N 6 HOH B 16 91 91 HOH HOH . 
N 6 HOH B 17 95 95 HOH HOH . 
N 6 HOH B 18 96 96 HOH HOH . 
N 6 HOH B 19 100 100 HOH HOH . 
N 6 HOH B 20 106 106 HOH HOH . 
N 6 HOH B 21 115 115 HOH HOH . 
N 6 HOH B 22 119 119 HOH HOH . 
N 6 HOH B 23 121 121 HOH HOH . 
N 6 HOH B 24 122 122 HOH HOH . 
N 6 HOH B 25 123 123 HOH HOH . 
N 6 HOH B 26 128 128 HOH HOH . 
O 6 HOH C 1 33 33 HOH HOH . 
O 6 HOH C 2 36 36 HOH HOH . 
O 6 HOH C 3 42 42 HOH HOH . 
O 6 HOH C 4 51 51 HOH HOH . 
O 6 HOH C 5 54 54 HOH HOH . 
O 6 HOH C 6 55 55 HOH HOH . 
O 6 HOH C 7 63 63 HOH HOH . 
O 6 HOH C 8 66 66 HOH HOH . 
O 6 HOH C 9 68 68 HOH HOH . 
O 6 HOH C 10 71 71 HOH HOH . 
O 6 HOH C 11 74 74 HOH HOH . 
O 6 HOH C 12 75 75 HOH HOH . 
O 6 HOH C 13 79 79 HOH HOH . 
O 6 HOH C 14 80 80 HOH HOH . 
O 6 HOH C 15 83 83 HOH HOH . 
O 6 HOH C 16 85 85 HOH HOH . 
O 6 HOH C 17 86 86 HOH HOH . 
O 6 HOH C 18 89 89 HOH HOH . 
O 6 HOH C 19 101 101 HOH HOH . 
O 6 HOH C 20 104 104 HOH HOH . 
O 6 HOH C 21 111 111 HOH HOH . 
O 6 HOH C 22 113 113 HOH HOH . 
O 6 HOH C 23 116 116 HOH HOH . 
O 6 HOH C 24 117 117 HOH HOH . 
O 6 HOH C 25 124 124 HOH HOH . 
O 6 HOH C 26 126 126 HOH HOH . 
O 6 HOH C 27 127 127 HOH HOH . 
P 6 HOH D 1 37 37 HOH HOH . 
P 6 HOH D 2 40 40 HOH HOH . 
P 6 HOH D 3 41 41 HOH HOH . 
P 6 HOH D 4 45 45 HOH HOH . 
P 6 HOH D 5 50 50 HOH HOH . 
P 6 HOH D 6 53 53 HOH HOH . 
P 6 HOH D 7 67 67 HOH HOH . 
P 6 HOH D 8 73 73 HOH HOH . 
P 6 HOH D 9 78 78 HOH HOH . 
P 6 HOH D 10 90 90 HOH HOH . 
P 6 HOH D 11 97 97 HOH HOH . 
P 6 HOH D 12 98 98 HOH HOH . 
P 6 HOH D 13 102 102 HOH HOH . 
P 6 HOH D 14 103 103 HOH HOH . 
P 6 HOH D 15 107 107 HOH HOH . 
P 6 HOH D 16 108 108 HOH HOH . 
P 6 HOH D 17 109 109 HOH HOH . 
P 6 HOH D 18 118 118 HOH HOH . 
P 6 HOH D 19 125 125 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C ACT . . . J 5 16.243 21.67 14.185 0.5 38.46 ? C ACT 32 B 1 
HETATM 2 O O ACT . . . J 5 15.928 22.751 14.985 0.5 36.31 ? O ACT 32 B 1 
HETATM 3 O OXT ACT . . . J 5 15.409 21.407 13.266 0.5 40.07 ? OXT ACT 32 B 1 
HETATM 4 C CH3 ACT . . . J 5 17.489 20.858 14.409 0.5 38 ? CH3 ACT 32 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#