data_260L
#
_model_server_result.job_id            jZl-vGJS_pe6rG4gWh_MFw 
_model_server_result.datetime_utc      '2024-12-22 06:28:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          260l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":500}' 
#
_entry.id    260L 
#
_exptl.entry_id    260L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            260L 
_cell.length_a            62.17 
_cell.length_b            62.17 
_cell.length_c            96.78 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 260L 
_symmetry.cell_setting             trigonal 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A N MET 1 A MET 1 1_555 E NI NI . A NI 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc2 A NE2 HIS 21 A HIS 21 1_555 D NI NI . A NI 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc3 A NE2 HIS 142 A HIS 142 1_555 D NI NI . A NI 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc4 D NI NI . A NI 500 1_555 F O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? 
metalc ? metalc5 D NI NI . A NI 500 1_555 F O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? 
metalc ? metalc6 D NI NI . A NI 500 1_555 F O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc7 D NI NI . A NI 500 1_555 F O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc8 E NI NI . A NI 600 1_555 F O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc9 E NI NI . A NI 600 1_555 F O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc10 E NI NI . A NI 600 1_555 F O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     260L 
_atom_sites.fract_transf_matrix[1][1]    0.016085 
_atom_sites.fract_transf_matrix[1][2]    0.009287 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018573 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010333 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 173 173 CL CL . 
C 2 CL A 1 178 178 CL CL . 
D 3 NI A 1 500 500 NI NI . 
E 3 NI A 1 600 600 NI NI . 
F 4 HOH A 1 171 171 HOH HOH . 
F 4 HOH A 2 172 172 HOH HOH . 
F 4 HOH A 3 174 174 HOH HOH . 
F 4 HOH A 4 175 175 HOH HOH . 
F 4 HOH A 5 176 176 HOH HOH . 
F 4 HOH A 6 177 177 HOH HOH . 
F 4 HOH A 7 179 179 HOH HOH . 
F 4 HOH A 8 180 180 HOH HOH . 
F 4 HOH A 9 181 181 HOH HOH . 
F 4 HOH A 10 182 182 HOH HOH . 
F 4 HOH A 11 183 183 HOH HOH . 
F 4 HOH A 12 184 184 HOH HOH . 
F 4 HOH A 13 185 185 HOH HOH . 
F 4 HOH A 14 186 186 HOH HOH . 
F 4 HOH A 15 187 187 HOH HOH . 
F 4 HOH A 16 188 188 HOH HOH . 
F 4 HOH A 17 189 189 HOH HOH . 
F 4 HOH A 18 190 190 HOH HOH . 
F 4 HOH A 19 191 191 HOH HOH . 
F 4 HOH A 20 192 192 HOH HOH . 
F 4 HOH A 21 193 193 HOH HOH . 
F 4 HOH A 22 194 194 HOH HOH . 
F 4 HOH A 23 195 195 HOH HOH . 
F 4 HOH A 24 196 196 HOH HOH . 
F 4 HOH A 25 197 197 HOH HOH . 
F 4 HOH A 26 198 198 HOH HOH . 
F 4 HOH A 27 199 199 HOH HOH . 
F 4 HOH A 28 200 200 HOH HOH . 
F 4 HOH A 29 201 201 HOH HOH . 
F 4 HOH A 30 202 202 HOH HOH . 
F 4 HOH A 31 203 203 HOH HOH . 
F 4 HOH A 32 204 204 HOH HOH . 
F 4 HOH A 33 205 205 HOH HOH . 
F 4 HOH A 34 206 206 HOH HOH . 
F 4 HOH A 35 207 207 HOH HOH . 
F 4 HOH A 36 208 208 HOH HOH . 
F 4 HOH A 37 209 209 HOH HOH . 
F 4 HOH A 38 210 210 HOH HOH . 
F 4 HOH A 39 211 211 HOH HOH . 
F 4 HOH A 40 212 212 HOH HOH . 
F 4 HOH A 41 213 213 HOH HOH . 
F 4 HOH A 42 214 214 HOH HOH . 
F 4 HOH A 43 215 215 HOH HOH . 
F 4 HOH A 44 216 216 HOH HOH . 
F 4 HOH A 45 217 217 HOH HOH . 
F 4 HOH A 46 218 218 HOH HOH . 
F 4 HOH A 47 219 219 HOH HOH . 
F 4 HOH A 48 220 220 HOH HOH . 
F 4 HOH A 49 221 221 HOH HOH . 
F 4 HOH A 50 222 222 HOH HOH . 
F 4 HOH A 51 223 223 HOH HOH . 
F 4 HOH A 52 224 224 HOH HOH . 
F 4 HOH A 53 225 225 HOH HOH . 
F 4 HOH A 54 226 226 HOH HOH . 
F 4 HOH A 55 227 227 HOH HOH . 
F 4 HOH A 56 228 228 HOH HOH . 
F 4 HOH A 57 229 229 HOH HOH . 
F 4 HOH A 58 230 230 HOH HOH . 
F 4 HOH A 59 231 231 HOH HOH . 
F 4 HOH A 60 232 232 HOH HOH . 
F 4 HOH A 61 233 233 HOH HOH . 
F 4 HOH A 62 234 234 HOH HOH . 
F 4 HOH A 63 235 235 HOH HOH . 
F 4 HOH A 64 236 236 HOH HOH . 
F 4 HOH A 65 237 237 HOH HOH . 
F 4 HOH A 66 238 238 HOH HOH . 
F 4 HOH A 67 239 239 HOH HOH . 
F 4 HOH A 68 240 240 HOH HOH . 
F 4 HOH A 69 241 241 HOH HOH . 
F 4 HOH A 70 242 242 HOH HOH . 
F 4 HOH A 71 243 243 HOH HOH . 
F 4 HOH A 72 244 244 HOH HOH . 
F 4 HOH A 73 245 245 HOH HOH . 
F 4 HOH A 74 246 246 HOH HOH . 
F 4 HOH A 75 247 247 HOH HOH . 
F 4 HOH A 76 248 248 HOH HOH . 
F 4 HOH A 77 249 249 HOH HOH . 
F 4 HOH A 78 250 250 HOH HOH . 
F 4 HOH A 79 251 251 HOH HOH . 
F 4 HOH A 80 252 252 HOH HOH . 
F 4 HOH A 81 253 253 HOH HOH . 
F 4 HOH A 82 254 254 HOH HOH . 
F 4 HOH A 83 255 255 HOH HOH . 
F 4 HOH A 84 256 256 HOH HOH . 
F 4 HOH A 85 257 257 HOH HOH . 
F 4 HOH A 86 258 258 HOH HOH . 
F 4 HOH A 87 259 259 HOH HOH . 
F 4 HOH A 88 260 260 HOH HOH . 
F 4 HOH A 89 261 261 HOH HOH . 
F 4 HOH A 90 262 262 HOH HOH . 
F 4 HOH A 91 263 263 HOH HOH . 
F 4 HOH A 92 264 264 HOH HOH . 
F 4 HOH A 93 265 265 HOH HOH . 
F 4 HOH A 94 266 266 HOH HOH . 
F 4 HOH A 95 267 267 HOH HOH . 
F 4 HOH A 96 268 268 HOH HOH . 
F 4 HOH A 97 269 269 HOH HOH . 
F 4 HOH A 98 270 270 HOH HOH . 
F 4 HOH A 99 271 271 HOH HOH . 
F 4 HOH A 100 272 272 HOH HOH . 
F 4 HOH A 101 501 501 HOH HOH . 
F 4 HOH A 102 502 502 HOH HOH . 
F 4 HOH A 103 503 503 HOH HOH . 
F 4 HOH A 104 504 504 HOH HOH . 
F 4 HOH A 105 601 601 HOH HOH . 
F 4 HOH A 106 602 602 HOH HOH . 
F 4 HOH A 107 603 603 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               38.114 
_atom_site.Cartn_y               20.142 
_atom_site.Cartn_z               7.025 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        26.17 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           500 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#