data_264D # _model_server_result.job_id MK1qe4Ye0al139VW0zfV8w _model_server_result.datetime_utc '2024-11-05 21:03:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 264d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":25}' # _entry.id 264D # _exptl.entry_id 264D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 424.498 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 264D _cell.length_a 25.5 _cell.length_b 41.4 _cell.length_c 65.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 264D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 3 A DC 3 1_555 B N1 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 3 A DC 3 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 3 A DC 3 1_555 B N2 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DA 4 A DA 4 1_555 B N3 DT 9 B DT 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N6 DA 4 A DA 4 1_555 B O4 DT 9 B DT 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 DA 5 A DA 5 1_555 B N3 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N6 DA 5 A DA 5 1_555 B O4 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 DA 6 A DA 6 1_555 B N3 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N6 DA 6 A DA 6 1_555 B O4 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DT 7 A DT 7 1_555 B N1 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O4 DT 7 A DT 7 1_555 B N6 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N3 DT 8 A DT 8 1_555 B N1 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O4 DT 8 A DT 8 1_555 B N6 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N3 DT 9 A DT 9 1_555 B N1 DA 4 B DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O4 DT 9 A DT 9 1_555 B N6 DA 4 B DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N1 DG 10 A DG 10 1_555 B N3 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N2 DG 10 A DG 10 1_555 B O2 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O6 DG 10 A DG 10 1_555 B N4 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N3 DC 11 A DC 11 1_555 B N1 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N4 DC 11 A DC 11 1_555 B O6 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O2 DC 11 A DC 11 1_555 B N2 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N1 DG 12 A DG 12 1_555 B N3 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N2 DG 12 A DG 12 1_555 B O2 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A O6 DG 12 A DG 12 1_555 B N4 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C25 H24 N6 O' _chem_comp.formula_weight 424.498 _chem_comp.id HT _chem_comp.mon_nstd_flag . _chem_comp.name "2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'HOECHST 33258' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 HT sing 152 n n O1 HO1 HT sing 153 n n C1 C2 HT doub 154 n y C1 C6 HT sing 155 n y C2 C3 HT sing 156 n y C2 H2 HT sing 157 n n C3 C4 HT doub 158 n y C3 H3 HT sing 159 n n C4 C5 HT sing 160 n y C4 C7 HT sing 161 n y C5 C6 HT doub 162 n y C5 H5 HT sing 163 n n C6 H6 HT sing 164 n n C7 N1 HT sing 165 n y C7 N2 HT doub 166 n y N1 C8 HT sing 167 n y N1 HN1 HT sing 168 n n C8 C9 HT doub 169 n y C8 C13 HT sing 170 n y C9 N2 HT sing 171 n y C9 C10 HT sing 172 n y C10 C11 HT doub 173 n y C10 H10 HT sing 174 n n C11 C12 HT sing 175 n y C11 H11 HT sing 176 n n C12 C13 HT doub 177 n y C12 C14 HT sing 178 n y C13 H13 HT sing 179 n n C14 N3 HT sing 180 n y C14 N4 HT doub 181 n y N3 C15 HT sing 182 n y N3 HN3 HT sing 183 n n C15 C16 HT doub 184 n y C15 C20 HT sing 185 n y C16 N4 HT sing 186 n y C16 C17 HT sing 187 n y C17 C18 HT doub 188 n y C17 H17 HT sing 189 n n C18 C19 HT sing 190 n y C18 H18 HT sing 191 n n C19 C20 HT doub 192 n y C19 N5 HT sing 193 n n C20 H20 HT sing 194 n n N5 C21 HT sing 195 n n N5 C24 HT sing 196 n n C21 C22 HT sing 197 n n C21 H211 HT sing 198 n n C21 H212 HT sing 199 n n C22 N6 HT sing 200 n n C22 H221 HT sing 201 n n C22 H222 HT sing 202 n n N6 C23 HT sing 203 n n N6 C25 HT sing 204 n n C23 C24 HT sing 205 n n C23 H231 HT sing 206 n n C23 H232 HT sing 207 n n C24 H241 HT sing 208 n n C24 H242 HT sing 209 n n C25 H253 HT sing 210 n n C25 H252 HT sing 211 n n C25 H251 HT sing 212 n n # _atom_sites.entry_id 264D _atom_sites.fract_transf_matrix[1][1] 0.039216 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024155 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015314 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HT B 1 25 25 HT HT . D 3 HOH A 1 27 27 HOH HOH . D 3 HOH A 2 28 28 HOH HOH . D 3 HOH A 3 33 33 HOH HOH . D 3 HOH A 4 35 35 HOH HOH . D 3 HOH A 5 37 37 HOH HOH . D 3 HOH A 6 41 41 HOH HOH . E 3 HOH B 1 26 26 HOH HOH . E 3 HOH B 2 29 29 HOH HOH . E 3 HOH B 3 30 30 HOH HOH . E 3 HOH B 4 31 31 HOH HOH . E 3 HOH B 5 32 32 HOH HOH . E 3 HOH B 6 34 34 HOH HOH . E 3 HOH B 7 36 36 HOH HOH . E 3 HOH B 8 38 38 HOH HOH . E 3 HOH B 9 39 39 HOH HOH . E 3 HOH B 10 40 40 HOH HOH . E 3 HOH B 11 42 42 HOH HOH . E 3 HOH B 12 43 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 HT . . . C 2 8.528 19.94 13.765 1 47.97 ? O1 HT 25 B 1 HETATM 2 C C1 HT . . . C 2 8.479 20.734 12.618 1 42.18 ? C1 HT 25 B 1 HETATM 3 C C4 HT . . . C 2 8.459 22.265 10.229 1 32.48 ? C4 HT 25 B 1 HETATM 4 C C2 HT . . . C 2 7.273 21.212 12.056 1 38.67 ? C2 HT 25 B 1 HETATM 5 C C3 HT . . . C 2 7.249 21.974 10.867 1 33.34 ? C3 HT 25 B 1 HETATM 6 C C6 HT . . . C 2 9.671 21.039 11.978 1 39.75 ? C6 HT 25 B 1 HETATM 7 C C5 HT . . . C 2 9.641 21.789 10.802 1 36.16 ? C5 HT 25 B 1 HETATM 8 C C7 HT . . . C 2 8.535 23.01 9.033 1 30.87 ? C7 HT 25 B 1 HETATM 9 N N1 HT . . . C 2 9.648 23.086 8.212 1 30.94 ? N1 HT 25 B 1 HETATM 10 C C8 HT . . . C 2 9.411 23.96 7.213 1 32.54 ? C8 HT 25 B 1 HETATM 11 C C9 HT . . . C 2 8.137 24.387 7.37 1 30.7 ? C9 HT 25 B 1 HETATM 12 N N2 HT . . . C 2 7.593 23.753 8.485 1 29.74 ? N2 HT 25 B 1 HETATM 13 C C10 HT . . . C 2 7.578 25.212 6.397 1 34.1 ? C10 HT 25 B 1 HETATM 14 C C11 HT . . . C 2 8.339 25.675 5.324 1 33.88 ? C11 HT 25 B 1 HETATM 15 C C12 HT . . . C 2 9.643 25.233 5.152 1 36.42 ? C12 HT 25 B 1 HETATM 16 C C13 HT . . . C 2 10.168 24.326 6.084 1 33.82 ? C13 HT 25 B 1 HETATM 17 C C14 HT . . . C 2 10.365 25.717 4.046 1 38.92 ? C14 HT 25 B 1 HETATM 18 N N3 HT . . . C 2 11.516 25.153 3.533 1 43.11 ? N3 HT 25 B 1 HETATM 19 C C15 HT . . . C 2 11.917 25.869 2.459 1 43.77 ? C15 HT 25 B 1 HETATM 20 C C16 HT . . . C 2 11.026 26.87 2.294 1 42.73 ? C16 HT 25 B 1 HETATM 21 N N4 HT . . . C 2 10.076 26.772 3.304 1 40.05 ? N4 HT 25 B 1 HETATM 22 C C17 HT . . . C 2 11.076 27.611 1.12 1 44.97 ? C17 HT 25 B 1 HETATM 23 C C18 HT . . . C 2 12.098 27.379 0.193 1 47.81 ? C18 HT 25 B 1 HETATM 24 C C19 HT . . . C 2 13.049 26.361 0.331 1 48.53 ? C19 HT 25 B 1 HETATM 25 C C20 HT . . . C 2 12.892 25.583 1.493 1 47 ? C20 HT 25 B 1 HETATM 26 N N5 HT . . . C 2 13.968 26.081 -0.642 1 48.73 ? N5 HT 25 B 1 HETATM 27 C C21 HT . . . C 2 13.604 26.309 -2.039 1 49.19 ? C21 HT 25 B 1 HETATM 28 C C22 HT . . . C 2 14.813 26.216 -2.933 1 50.72 ? C22 HT 25 B 1 HETATM 29 N N6 HT . . . C 2 15.623 25.003 -2.858 1 51.9 ? N6 HT 25 B 1 HETATM 30 C C23 HT . . . C 2 16.021 24.926 -1.464 1 50.26 ? C23 HT 25 B 1 HETATM 31 C C24 HT . . . C 2 14.931 24.995 -0.446 1 49.75 ? C24 HT 25 B 1 HETATM 32 C C25 HT . . . C 2 16.805 25.149 -3.702 1 52.34 ? C25 HT 25 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #