data_289D
#
_model_server_result.job_id            3peL24c7moDWKoa7kq-Z7g 
_model_server_result.datetime_utc      '2025-04-23 16:52:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          289d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":25}' 
#
_entry.id    289D 
#
_exptl.entry_id    289D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              388.505 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,5-BIS{[4-(N-CYCLOPROPYLDIAMINOMETHYL)PHENYL]}FURAN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            289D 
_cell.length_a            25.43 
_cell.length_b            40.66 
_cell.length_c            66.13 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 289D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N3 DC 3 A DC 3 1_555 B N1 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N4 DC 3 A DC 3 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A O2 DC 3 A DC 3 1_555 B N2 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N1 DG 4 A DG 4 1_555 B N3 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N2 DG 4 A DG 4 1_555 B O2 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A O6 DG 4 A DG 4 1_555 B N4 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N1 DA 5 A DA 5 1_555 B N3 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N6 DA 5 A DA 5 1_555 B O4 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A N1 DA 6 A DA 6 1_555 B N3 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N6 DA 6 A DA 6 1_555 B O4 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A N3 DT 7 A DT 7 1_555 B N1 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A O4 DT 7 A DT 7 1_555 B N6 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 A N3 DT 8 A DT 8 1_555 B N1 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 A O4 DT 8 A DT 8 1_555 B N6 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 A N3 DC 9 A DC 9 1_555 B N1 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 A N4 DC 9 A DC 9 1_555 B O6 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 A O2 DC 9 A DC 9 1_555 B N2 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 A N1 DG 10 A DG 10 1_555 B N3 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 A N2 DG 10 A DG 10 1_555 B O2 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 A O6 DG 10 A DG 10 1_555 B N4 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog27 A N3 DC 11 A DC 11 1_555 B N1 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog28 A N4 DC 11 A DC 11 1_555 B O6 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog29 A O2 DC 11 A DC 11 1_555 B N2 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog30 A N1 DG 12 A DG 12 1_555 B N3 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog31 A N2 DG 12 A DG 12 1_555 B O2 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog32 A O6 DG 12 A DG 12 1_555 B N4 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C24 H28 N4 O' 
_chem_comp.formula_weight    388.505 
_chem_comp.id                D19 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,5-BIS{[4-(N-CYCLOPROPYLDIAMINOMETHYL)PHENYL]}FURAN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'FURAMIDINE DERIVATIVE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C9 D19 sing 1 n n 
C10 C8 D19 sing 2 n n 
C10 H101 D19 sing 3 n n 
C10 H102 D19 sing 4 n n 
C9 C8 D19 sing 5 n n 
C9 H91 D19 sing 6 n n 
C9 H92 D19 sing 7 n n 
C8 N2 D19 sing 8 n n 
C8 H8 D19 sing 9 n n 
N2 C7 D19 sing 10 n n 
N2 HN2 D19 sing 11 n n 
C7 N1 D19 sing 12 n n 
C7 C4 D19 sing 13 n n 
C7 H7 D19 sing 14 n n 
N1 HN11 D19 sing 15 n n 
N1 HN12 D19 sing 16 n n 
C1 C2 D19 sing 17 n y 
C1 C6 D19 doub 18 n y 
C1 CA D19 sing 19 n y 
C2 C3 D19 doub 20 n y 
C2 H2 D19 sing 21 n n 
C3 C4 D19 sing 22 n y 
C3 H3 D19 sing 23 n n 
C4 C5 D19 doub 24 n y 
C5 C6 D19 sing 25 n y 
C5 H5 D19 sing 26 n n 
C6 H6 D19 sing 27 n n 
CA CB D19 doub 28 n y 
CA O1 D19 sing 29 n y 
CB CB' D19 sing 30 n y 
CB HB D19 sing 31 n n 
CB' CA' D19 doub 32 n y 
CB' HB' D19 sing 33 n n 
CA' O1 D19 sing 34 n y 
CA' C1' D19 sing 35 n y 
C1' C2' D19 sing 36 n y 
C1' C6' D19 doub 37 n y 
C2' C3' D19 doub 38 n y 
C2' H2' D19 sing 39 n n 
C3' C4' D19 sing 40 n y 
C3' H3' D19 sing 41 n n 
C4' C5' D19 doub 42 n y 
C4' C7' D19 sing 43 n n 
C5' C6' D19 sing 44 n y 
C5' H5' D19 sing 45 n n 
C6' H6' D19 sing 46 n n 
C7' N1' D19 sing 47 n n 
C7' N2' D19 sing 48 n n 
C7' H7' D19 sing 49 n n 
N1' "HN'1" D19 sing 50 n n 
N1' "HN'2" D19 sing 51 n n 
N2' C8' D19 sing 52 n n 
N2' HN2' D19 sing 53 n n 
C8' C9' D19 sing 54 n n 
C8' CAX D19 sing 55 n n 
C8' H8' D19 sing 56 n n 
C9' CAX D19 sing 57 n n 
C9' "H9'1" D19 sing 58 n n 
C9' "H9'2" D19 sing 59 n n 
CAX "H1'1" D19 sing 60 n n 
CAX "H1'2" D19 sing 61 n n 
#
_atom_sites.entry_id                     289D 
_atom_sites.fract_transf_matrix[1][1]    0.039324 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024594 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015122 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 D19 A 1 25 25 D19 D19 . 
D 3 HOH A 1 26 26 HOH HOH . 
D 3 HOH A 2 28 28 HOH HOH . 
D 3 HOH A 3 29 29 HOH HOH . 
D 3 HOH A 4 32 32 HOH HOH . 
D 3 HOH A 5 39 39 HOH HOH . 
D 3 HOH A 6 41 41 HOH HOH . 
D 3 HOH A 7 43 43 HOH HOH . 
D 3 HOH A 8 51 51 HOH HOH . 
D 3 HOH A 9 53 53 HOH HOH . 
D 3 HOH A 10 54 54 HOH HOH . 
D 3 HOH A 11 55 55 HOH HOH . 
D 3 HOH A 12 56 56 HOH HOH . 
D 3 HOH A 13 57 57 HOH HOH . 
D 3 HOH A 14 59 59 HOH HOH . 
D 3 HOH A 15 64 64 HOH HOH . 
D 3 HOH A 16 66 66 HOH HOH . 
D 3 HOH A 17 68 68 HOH HOH . 
D 3 HOH A 18 71 71 HOH HOH . 
D 3 HOH A 19 72 72 HOH HOH . 
D 3 HOH A 20 75 75 HOH HOH . 
E 3 HOH B 1 27 27 HOH HOH . 
E 3 HOH B 2 30 30 HOH HOH . 
E 3 HOH B 3 31 31 HOH HOH . 
E 3 HOH B 4 33 33 HOH HOH . 
E 3 HOH B 5 34 34 HOH HOH . 
E 3 HOH B 6 35 35 HOH HOH . 
E 3 HOH B 7 36 36 HOH HOH . 
E 3 HOH B 8 37 37 HOH HOH . 
E 3 HOH B 9 38 38 HOH HOH . 
E 3 HOH B 10 40 40 HOH HOH . 
E 3 HOH B 11 42 42 HOH HOH . 
E 3 HOH B 12 44 44 HOH HOH . 
E 3 HOH B 13 45 45 HOH HOH . 
E 3 HOH B 14 46 46 HOH HOH . 
E 3 HOH B 15 47 47 HOH HOH . 
E 3 HOH B 16 48 48 HOH HOH . 
E 3 HOH B 17 49 49 HOH HOH . 
E 3 HOH B 18 50 50 HOH HOH . 
E 3 HOH B 19 52 52 HOH HOH . 
E 3 HOH B 20 58 58 HOH HOH . 
E 3 HOH B 21 60 60 HOH HOH . 
E 3 HOH B 22 61 61 HOH HOH . 
E 3 HOH B 23 62 62 HOH HOH . 
E 3 HOH B 24 63 63 HOH HOH . 
E 3 HOH B 25 65 65 HOH HOH . 
E 3 HOH B 26 67 67 HOH HOH . 
E 3 HOH B 27 69 69 HOH HOH . 
E 3 HOH B 28 70 70 HOH HOH . 
E 3 HOH B 29 73 73 HOH HOH . 
E 3 HOH B 30 74 74 HOH HOH . 
E 3 HOH B 31 76 76 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 D19 . . . C 2 12.824 28.393 1.945 1 45.38 ? C10 D19 25 A 1 
HETATM 2 C C9 D19 . . . C 2 11.774 27.724 1.077 1 48 ? C9 D19 25 A 1 
HETATM 3 C C8 D19 . . . C 2 12.534 26.915 2.114 1 46.89 ? C8 D19 25 A 1 
HETATM 4 N N2 D19 . . . C 2 11.63 26.486 2.984 1 46.15 ? N2 D19 25 A 1 
HETATM 5 C C7 D19 . . . C 2 11.664 25.27 3.533 1 43.56 ? C7 D19 25 A 1 
HETATM 6 N N1 D19 . . . C 2 12.326 24.275 2.969 1 43.26 ? N1 D19 25 A 1 
HETATM 7 C C1 D19 . . . C 2 9.153 24.235 6.83 1 38.82 ? C1 D19 25 A 1 
HETATM 8 C C2 D19 . . . C 2 10.464 23.747 6.755 1 37.11 ? C2 D19 25 A 1 
HETATM 9 C C3 D19 . . . C 2 11.292 24.127 5.689 1 41.38 ? C3 D19 25 A 1 
HETATM 10 C C4 D19 . . . C 2 10.843 25 4.705 1 43.65 ? C4 D19 25 A 1 
HETATM 11 C C5 D19 . . . C 2 9.535 25.516 4.77 1 45.03 ? C5 D19 25 A 1 
HETATM 12 C C6 D19 . . . C 2 8.687 25.128 5.835 1 43.21 ? C6 D19 25 A 1 
HETATM 13 C CA D19 . . . C 2 8.294 23.794 7.907 1 37.34 ? CA D19 25 A 1 
HETATM 14 C CB D19 . . . C 2 6.99 24.079 8.207 1 35.55 ? CB D19 25 A 1 
HETATM 15 C CB' D19 . . . C 2 6.629 23.323 9.404 1 36.96 ? CB' D19 25 A 1 
HETATM 16 C CA' D19 . . . C 2 7.773 22.679 9.777 1 36.14 ? CA' D19 25 A 1 
HETATM 17 O O1 D19 . . . C 2 8.823 22.904 8.866 1 37.35 ? O1 D19 25 A 1 
HETATM 18 C C1' D19 . . . C 2 8.078 21.884 10.897 1 35.5 ? C1' D19 25 A 1 
HETATM 19 C C2' D19 . . . C 2 9.391 21.431 10.961 1 38.9 ? C2' D19 25 A 1 
HETATM 20 C C3' D19 . . . C 2 9.862 20.682 12.038 1 39.39 ? C3' D19 25 A 1 
HETATM 21 C C4' D19 . . . C 2 8.985 20.372 13.067 1 43.96 ? C4' D19 25 A 1 
HETATM 22 C C5' D19 . . . C 2 7.637 20.833 12.976 1 43.66 ? C5' D19 25 A 1 
HETATM 23 C C6' D19 . . . C 2 7.161 21.596 11.893 1 38.82 ? C6' D19 25 A 1 
HETATM 24 C C7' D19 . . . C 2 9.475 19.504 14.19 1 46.87 ? C7' D19 25 A 1 
HETATM 25 N N1' D19 . . . C 2 10.799 19.306 14.386 1 43.96 ? N1' D19 25 A 1 
HETATM 26 N N2' D19 . . . C 2 8.549 18.832 14.92 1 55.62 ? N2' D19 25 A 1 
HETATM 27 C C8' D19 . . . C 2 8.778 17.652 15.531 1 60.3 ? C8' D19 25 A 1 
HETATM 28 C C9' D19 . . . C 2 7.671 16.621 15.523 1 58.15 ? C9' D19 25 A 1 
HETATM 29 C CAX D19 . . . C 2 7.898 17.507 16.77 1 60.33 ? CAX D19 25 A 1 
#
_model_server_stats.io_time_ms              226 
_model_server_stats.parse_time_ms           73 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           29 
#