data_2A19
#
_model_server_result.job_id            wMRicP466idTJzioSxPyew 
_model_server_result.datetime_utc      '2024-11-04 20:29:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2a19 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":2640}' 
#
_entry.id    2A19 
#
_exptl.entry_id    2A19 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.44 
_cell.angle_gamma         90 
_cell.entry_id            2A19 
_cell.length_a            64.659 
_cell.length_b            48.75 
_cell.length_c            133.434 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2A19 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ARG 178 B ARG 445 1_555 B N TPO 179 B TPO 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 B C TPO 179 B TPO 446 1_555 B N ARG 180 B ARG 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
metalc ? metalc1 B OD1 ASN 152 B ASN 419 1_555 E MG MG . B MG 1642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc2 B OD2 ASP 165 B ASP 432 1_555 D MG MG . B MG 1641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc3 B OD1 ASP 165 B ASP 432 1_555 D MG MG . B MG 1641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? 
metalc ? metalc4 B OD2 ASP 165 B ASP 432 1_555 E MG MG . B MG 1642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
metalc ? metalc5 F O2B ANP . B ANP 1640 1_555 D MG MG . B MG 1641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? 
metalc ? metalc6 F O1G ANP . B ANP 1640 1_555 E MG MG . B MG 1642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? 
metalc ? metalc7 F O2A ANP . B ANP 1640 1_555 E MG MG . B MG 1642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc8 C OD1 ASN 152 C ASN 419 1_555 G MG MG . C MG 2642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? 
metalc ? metalc9 C OD2 ASP 165 C ASP 432 1_555 H MG MG . C MG 2641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc10 C OD2 ASP 165 C ASP 432 1_555 G MG MG . C MG 2642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? 
metalc ? metalc11 J N3B ANP . C ANP 2640 1_555 H MG MG . C MG 2641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? 
metalc ? metalc12 J O3G ANP . C ANP 2640 1_555 G MG MG . C MG 2642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
metalc ? metalc13 J O1A ANP . C ANP 2640 1_555 G MG MG . C MG 2642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     2A19 
_atom_sites.fract_transf_matrix[1][1]    0.015466 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002296 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020513 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007576 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 MG B 1 1641 641 MG MG . 
E 3 MG B 1 1642 642 MG MG . 
F 4 ANP B 1 1640 640 ANP ANP . 
G 3 MG C 1 2642 642 MG MG . 
H 3 MG C 1 2641 641 MG MG . 
I 5 PO4 C 1 901 1 PO4 PO4 . 
J 4 ANP C 1 2640 640 ANP ANP . 
K 6 HOH A 1 176 1 HOH HOH . 
K 6 HOH A 2 177 2 HOH HOH . 
K 6 HOH A 3 178 3 HOH HOH . 
K 6 HOH A 4 179 4 HOH HOH . 
K 6 HOH A 5 180 6 HOH HOH . 
K 6 HOH A 6 181 7 HOH HOH . 
K 6 HOH A 7 182 9 HOH HOH . 
K 6 HOH A 8 183 11 HOH HOH . 
K 6 HOH A 9 184 16 HOH HOH . 
K 6 HOH A 10 185 18 HOH HOH . 
K 6 HOH A 11 186 19 HOH HOH . 
K 6 HOH A 12 187 20 HOH HOH . 
K 6 HOH A 13 188 22 HOH HOH . 
K 6 HOH A 14 189 25 HOH HOH . 
K 6 HOH A 15 190 26 HOH HOH . 
K 6 HOH A 16 191 27 HOH HOH . 
K 6 HOH A 17 192 28 HOH HOH . 
K 6 HOH A 18 193 32 HOH HOH . 
K 6 HOH A 19 194 34 HOH HOH . 
K 6 HOH A 20 195 38 HOH HOH . 
K 6 HOH A 21 196 39 HOH HOH . 
K 6 HOH A 22 197 45 HOH HOH . 
K 6 HOH A 23 198 46 HOH HOH . 
K 6 HOH A 24 199 51 HOH HOH . 
K 6 HOH A 25 200 52 HOH HOH . 
K 6 HOH A 26 201 57 HOH HOH . 
K 6 HOH A 27 202 58 HOH HOH . 
K 6 HOH A 28 203 62 HOH HOH . 
K 6 HOH A 29 204 63 HOH HOH . 
K 6 HOH A 30 205 64 HOH HOH . 
K 6 HOH A 31 206 68 HOH HOH . 
K 6 HOH A 32 207 72 HOH HOH . 
L 6 HOH B 1 5 5 HOH HOH . 
L 6 HOH B 2 8 8 HOH HOH . 
L 6 HOH B 3 10 10 HOH HOH . 
L 6 HOH B 4 12 12 HOH HOH . 
L 6 HOH B 5 13 13 HOH HOH . 
L 6 HOH B 6 14 14 HOH HOH . 
L 6 HOH B 7 17 17 HOH HOH . 
L 6 HOH B 8 21 21 HOH HOH . 
L 6 HOH B 9 23 23 HOH HOH . 
L 6 HOH B 10 24 24 HOH HOH . 
L 6 HOH B 11 29 29 HOH HOH . 
L 6 HOH B 12 30 30 HOH HOH . 
L 6 HOH B 13 31 31 HOH HOH . 
L 6 HOH B 14 35 35 HOH HOH . 
L 6 HOH B 15 40 40 HOH HOH . 
L 6 HOH B 16 41 41 HOH HOH . 
L 6 HOH B 17 42 42 HOH HOH . 
L 6 HOH B 18 44 44 HOH HOH . 
L 6 HOH B 19 47 47 HOH HOH . 
L 6 HOH B 20 48 48 HOH HOH . 
L 6 HOH B 21 49 49 HOH HOH . 
L 6 HOH B 22 53 53 HOH HOH . 
L 6 HOH B 23 54 54 HOH HOH . 
L 6 HOH B 24 55 55 HOH HOH . 
L 6 HOH B 25 56 56 HOH HOH . 
L 6 HOH B 26 59 59 HOH HOH . 
L 6 HOH B 27 60 60 HOH HOH . 
L 6 HOH B 28 61 61 HOH HOH . 
L 6 HOH B 29 65 65 HOH HOH . 
L 6 HOH B 30 66 66 HOH HOH . 
L 6 HOH B 31 67 67 HOH HOH . 
L 6 HOH B 32 69 69 HOH HOH . 
L 6 HOH B 33 71 71 HOH HOH . 
M 6 HOH C 1 15 15 HOH HOH . 
M 6 HOH C 2 33 33 HOH HOH . 
M 6 HOH C 3 36 36 HOH HOH . 
M 6 HOH C 4 37 37 HOH HOH . 
M 6 HOH C 5 43 43 HOH HOH . 
M 6 HOH C 6 50 50 HOH HOH . 
M 6 HOH C 7 70 70 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . J 4 44.727 -6.369 -3.913 0.5 78.49 ? PG ANP 2640 C 1 
HETATM 2 O O1G ANP . . . J 4 43.771 -7.279 -3.179 0.5 77.79 ? O1G ANP 2640 C 1 
HETATM 3 O O2G ANP . . . J 4 46.049 -6.199 -3.206 0.5 78.42 ? O2G ANP 2640 C 1 
HETATM 4 O O3G ANP . . . J 4 44.898 -6.711 -5.377 0.5 78.55 ? O3G ANP 2640 C 1 
HETATM 5 P PB ANP . . . J 4 42.261 -4.499 -3.866 0.5 79.8 ? PB ANP 2640 C 1 
HETATM 6 O O1B ANP . . . J 4 41.84 -4.131 -2.458 0.5 79.03 ? O1B ANP 2640 C 1 
HETATM 7 O O2B ANP . . . J 4 41.869 -3.57 -4.996 0.5 79.05 ? O2B ANP 2640 C 1 
HETATM 8 N N3B ANP . . . J 4 43.999 -4.766 -3.889 0.5 78.67 ? N3B ANP 2640 C 1 
HETATM 9 P PA ANP . . . J 4 41.688 -6.561 -5.646 0.5 79.45 ? PA ANP 2640 C 1 
HETATM 10 O O1A ANP . . . J 4 42.298 -5.591 -6.63 0.5 78.86 ? O1A ANP 2640 C 1 
HETATM 11 O O2A ANP . . . J 4 42.275 -7.948 -5.485 0.5 78.91 ? O2A ANP 2640 C 1 
HETATM 12 O O3A ANP . . . J 4 41.563 -5.898 -4.193 0.5 79.26 ? O3A ANP 2640 C 1 
HETATM 13 O O5' ANP . . . J 4 40.123 -6.673 -5.967 1 80.16 ? O5' ANP 2640 C 1 
HETATM 14 C C5' ANP . . . J 4 39.28 -7.456 -5.12 1 78.83 ? C5' ANP 2640 C 1 
HETATM 15 C C4' ANP . . . J 4 38.713 -8.609 -5.938 1 77.91 ? C4' ANP 2640 C 1 
HETATM 16 O O4' ANP . . . J 4 38.109 -8.096 -7.127 1 77.98 ? O4' ANP 2640 C 1 
HETATM 17 C C3' ANP . . . J 4 39.802 -9.569 -6.38 1 77.15 ? C3' ANP 2640 C 1 
HETATM 18 O O3' ANP . . . J 4 39.362 -10.892 -6.087 1 77.82 ? O3' ANP 2640 C 1 
HETATM 19 C C2' ANP . . . J 4 39.938 -9.386 -7.874 1 76.54 ? C2' ANP 2640 C 1 
HETATM 20 O O2' ANP . . . J 4 40.067 -10.657 -8.499 1 75.99 ? O2' ANP 2640 C 1 
HETATM 21 C C1' ANP . . . J 4 38.618 -8.764 -8.278 1 76.75 ? C1' ANP 2640 C 1 
HETATM 22 N N9 ANP . . . J 4 38.748 -7.766 -9.358 1 76.68 ? N9 ANP 2640 C 1 
HETATM 23 C C8 ANP . . . J 4 39.393 -6.584 -9.307 1 76.86 ? C8 ANP 2640 C 1 
HETATM 24 N N7 ANP . . . J 4 39.293 -5.92 -10.488 1 76.61 ? N7 ANP 2640 C 1 
HETATM 25 C C5 ANP . . . J 4 38.557 -6.689 -11.308 1 76.69 ? C5 ANP 2640 C 1 
HETATM 26 C C6 ANP . . . J 4 38.053 -6.61 -12.695 1 76.38 ? C6 ANP 2640 C 1 
HETATM 27 N N6 ANP . . . J 4 38.32 -5.545 -13.477 1 76.58 ? N6 ANP 2640 C 1 
HETATM 28 N N1 ANP . . . J 4 37.323 -7.643 -13.164 1 76.74 ? N1 ANP 2640 C 1 
HETATM 29 C C2 ANP . . . J 4 37.034 -8.721 -12.413 1 76.46 ? C2 ANP 2640 C 1 
HETATM 30 N N3 ANP . . . J 4 37.45 -8.862 -11.149 1 76.88 ? N3 ANP 2640 C 1 
HETATM 31 C C4 ANP . . . J 4 38.201 -7.901 -10.556 1 76.81 ? C4 ANP 2640 C 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#