data_2A1T
#
_model_server_result.job_id            83DSvhsAjWcmYvdqJPckyg 
_model_server_result.datetime_utc      '2024-10-16 10:34:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2a1t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":600}' 
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_entry.id    2A1T 
#
_exptl.entry_id    2A1T 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2A1T 
_cell.length_a            94.184 
_cell.length_b            100.659 
_cell.length_c            244.384 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2A1T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             L 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     2A1T 
_atom_sites.fract_transf_matrix[1][1]    0.010618 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009935 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004092 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 FAD A 1 399 399 FAD FAD . 
H 4 FAD B 1 1399 399 FAD FAD . 
I 4 FAD C 1 2399 399 FAD FAD . 
J 4 FAD D 1 3399 399 FAD FAD . 
K 4 FAD R 1 599 599 FAD FAD . 
L 5 AMP S 1 600 600 AMP AMP . 
M 6 HOH A 1 400 1 HOH HOH . 
M 6 HOH A 2 401 2 HOH HOH . 
M 6 HOH A 3 402 3 HOH HOH . 
M 6 HOH A 4 403 4 HOH HOH . 
M 6 HOH A 5 404 5 HOH HOH . 
M 6 HOH A 6 405 6 HOH HOH . 
M 6 HOH A 7 406 7 HOH HOH . 
M 6 HOH A 8 407 8 HOH HOH . 
M 6 HOH A 9 408 9 HOH HOH . 
M 6 HOH A 10 409 10 HOH HOH . 
M 6 HOH A 11 410 11 HOH HOH . 
M 6 HOH A 12 411 12 HOH HOH . 
M 6 HOH A 13 412 13 HOH HOH . 
N 6 HOH B 1 1400 14 HOH HOH . 
N 6 HOH B 2 1401 16 HOH HOH . 
N 6 HOH B 3 1402 18 HOH HOH . 
N 6 HOH B 4 1403 17 HOH HOH . 
N 6 HOH B 5 1404 19 HOH HOH . 
N 6 HOH B 6 1405 20 HOH HOH . 
N 6 HOH B 7 1406 22 HOH HOH . 
N 6 HOH B 8 1407 23 HOH HOH . 
N 6 HOH B 9 1408 24 HOH HOH . 
O 6 HOH C 1 2400 15 HOH HOH . 
O 6 HOH C 2 2401 25 HOH HOH . 
O 6 HOH C 3 2402 26 HOH HOH . 
O 6 HOH C 4 2403 27 HOH HOH . 
O 6 HOH C 5 2404 28 HOH HOH . 
O 6 HOH C 6 2405 29 HOH HOH . 
O 6 HOH C 7 2406 30 HOH HOH . 
O 6 HOH C 8 2407 31 HOH HOH . 
O 6 HOH C 9 2408 32 HOH HOH . 
O 6 HOH C 10 2409 33 HOH HOH . 
O 6 HOH C 11 2410 34 HOH HOH . 
O 6 HOH C 12 2411 35 HOH HOH . 
O 6 HOH C 13 2412 36 HOH HOH . 
O 6 HOH C 14 2413 37 HOH HOH . 
O 6 HOH C 15 2414 38 HOH HOH . 
O 6 HOH C 16 2415 39 HOH HOH . 
O 6 HOH C 17 2416 40 HOH HOH . 
P 6 HOH D 1 3400 21 HOH HOH . 
P 6 HOH D 2 3401 41 HOH HOH . 
P 6 HOH D 3 3402 42 HOH HOH . 
P 6 HOH D 4 3403 43 HOH HOH . 
P 6 HOH D 5 3404 44 HOH HOH . 
P 6 HOH D 6 3405 45 HOH HOH . 
P 6 HOH D 7 3406 46 HOH HOH . 
P 6 HOH D 8 3407 47 HOH HOH . 
P 6 HOH D 9 3408 48 HOH HOH . 
P 6 HOH D 10 3409 49 HOH HOH . 
P 6 HOH D 11 3410 62 HOH HOH . 
P 6 HOH D 12 3411 63 HOH HOH . 
Q 6 HOH R 1 600 50 HOH HOH . 
Q 6 HOH R 2 601 51 HOH HOH . 
Q 6 HOH R 3 602 64 HOH HOH . 
R 6 HOH S 1 601 52 HOH HOH . 
R 6 HOH S 2 602 53 HOH HOH . 
R 6 HOH S 3 603 54 HOH HOH . 
R 6 HOH S 4 604 55 HOH HOH . 
R 6 HOH S 5 605 56 HOH HOH . 
R 6 HOH S 6 606 57 HOH HOH . 
R 6 HOH S 7 607 58 HOH HOH . 
R 6 HOH S 8 608 59 HOH HOH . 
R 6 HOH S 9 609 60 HOH HOH . 
R 6 HOH S 10 610 61 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . L 5 -5.597 58.433 -1.988 1 46.77 ? P AMP 600 S 1 
HETATM 2 O O1P AMP . . . L 5 -6.186 58.71 -3.352 1 45.14 ? O1P AMP 600 S 1 
HETATM 3 O O2P AMP . . . L 5 -6.487 57.686 -1.024 1 45.82 ? O2P AMP 600 S 1 
HETATM 4 O O3P AMP . . . L 5 -4.163 57.965 -2.08 1 44.01 ? O3P AMP 600 S 1 
HETATM 5 O O5' AMP . . . L 5 -5.556 59.846 -1.23 1 45.65 ? O5' AMP 600 S 1 
HETATM 6 C C5' AMP . . . L 5 -4.583 60.816 -1.582 1 45.25 ? C5' AMP 600 S 1 
HETATM 7 C C4' AMP . . . L 5 -5.083 62.138 -1.066 1 44.92 ? C4' AMP 600 S 1 
HETATM 8 O O4' AMP . . . L 5 -6.512 62.171 -1.116 1 43.58 ? O4' AMP 600 S 1 
HETATM 9 C C3' AMP . . . L 5 -4.676 62.382 0.387 1 44.83 ? C3' AMP 600 S 1 
HETATM 10 O O3' AMP . . . L 5 -3.351 62.923 0.542 1 44.4 ? O3' AMP 600 S 1 
HETATM 11 C C2' AMP . . . L 5 -5.756 63.337 0.846 1 44.51 ? C2' AMP 600 S 1 
HETATM 12 O O2' AMP . . . L 5 -5.383 64.693 0.597 1 41.63 ? O2' AMP 600 S 1 
HETATM 13 C C1' AMP . . . L 5 -6.965 62.917 0.011 1 45.43 ? C1' AMP 600 S 1 
HETATM 14 N N9 AMP . . . L 5 -7.789 62 0.815 1 46.35 ? N9 AMP 600 S 1 
HETATM 15 C C8 AMP . . . L 5 -7.848 60.656 0.712 1 46.37 ? C8 AMP 600 S 1 
HETATM 16 N N7 AMP . . . L 5 -8.719 60.158 1.623 1 46.09 ? N7 AMP 600 S 1 
HETATM 17 C C5 AMP . . . L 5 -9.219 61.18 2.324 1 44.75 ? C5 AMP 600 S 1 
HETATM 18 C C6 AMP . . . L 5 -10.174 61.327 3.426 1 45.3 ? C6 AMP 600 S 1 
HETATM 19 N N6 AMP . . . L 5 -10.802 60.272 4 1 45.8 ? N6 AMP 600 S 1 
HETATM 20 N N1 AMP . . . L 5 -10.393 62.575 3.842 1 46.24 ? N1 AMP 600 S 1 
HETATM 21 C C2 AMP . . . L 5 -9.792 63.653 3.292 1 46.57 ? C2 AMP 600 S 1 
HETATM 22 N N3 AMP . . . L 5 -8.913 63.582 2.281 1 45.96 ? N3 AMP 600 S 1 
HETATM 23 C C4 AMP . . . L 5 -8.6 62.387 1.783 1 45.71 ? C4 AMP 600 S 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           23 
#