data_2A1T # _model_server_result.job_id VxoR6giyHsbFK1K5ZcGLOg _model_server_result.datetime_utc '2024-12-26 14:20:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a1t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":600}' # _entry.id 2A1T # _exptl.entry_id 2A1T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2A1T _cell.length_a 94.184 _cell.length_b 100.659 _cell.length_c 244.384 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A1T _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 2A1T _atom_sites.fract_transf_matrix[1][1] 0.010618 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009935 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004092 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 FAD A 1 399 399 FAD FAD . H 4 FAD B 1 1399 399 FAD FAD . I 4 FAD C 1 2399 399 FAD FAD . J 4 FAD D 1 3399 399 FAD FAD . K 4 FAD R 1 599 599 FAD FAD . L 5 AMP S 1 600 600 AMP AMP . M 6 HOH A 1 400 1 HOH HOH . M 6 HOH A 2 401 2 HOH HOH . M 6 HOH A 3 402 3 HOH HOH . M 6 HOH A 4 403 4 HOH HOH . M 6 HOH A 5 404 5 HOH HOH . M 6 HOH A 6 405 6 HOH HOH . M 6 HOH A 7 406 7 HOH HOH . M 6 HOH A 8 407 8 HOH HOH . M 6 HOH A 9 408 9 HOH HOH . M 6 HOH A 10 409 10 HOH HOH . M 6 HOH A 11 410 11 HOH HOH . M 6 HOH A 12 411 12 HOH HOH . M 6 HOH A 13 412 13 HOH HOH . N 6 HOH B 1 1400 14 HOH HOH . N 6 HOH B 2 1401 16 HOH HOH . N 6 HOH B 3 1402 18 HOH HOH . N 6 HOH B 4 1403 17 HOH HOH . N 6 HOH B 5 1404 19 HOH HOH . N 6 HOH B 6 1405 20 HOH HOH . N 6 HOH B 7 1406 22 HOH HOH . N 6 HOH B 8 1407 23 HOH HOH . N 6 HOH B 9 1408 24 HOH HOH . O 6 HOH C 1 2400 15 HOH HOH . O 6 HOH C 2 2401 25 HOH HOH . O 6 HOH C 3 2402 26 HOH HOH . O 6 HOH C 4 2403 27 HOH HOH . O 6 HOH C 5 2404 28 HOH HOH . O 6 HOH C 6 2405 29 HOH HOH . O 6 HOH C 7 2406 30 HOH HOH . O 6 HOH C 8 2407 31 HOH HOH . O 6 HOH C 9 2408 32 HOH HOH . O 6 HOH C 10 2409 33 HOH HOH . O 6 HOH C 11 2410 34 HOH HOH . O 6 HOH C 12 2411 35 HOH HOH . O 6 HOH C 13 2412 36 HOH HOH . O 6 HOH C 14 2413 37 HOH HOH . O 6 HOH C 15 2414 38 HOH HOH . O 6 HOH C 16 2415 39 HOH HOH . O 6 HOH C 17 2416 40 HOH HOH . P 6 HOH D 1 3400 21 HOH HOH . P 6 HOH D 2 3401 41 HOH HOH . P 6 HOH D 3 3402 42 HOH HOH . P 6 HOH D 4 3403 43 HOH HOH . P 6 HOH D 5 3404 44 HOH HOH . P 6 HOH D 6 3405 45 HOH HOH . P 6 HOH D 7 3406 46 HOH HOH . P 6 HOH D 8 3407 47 HOH HOH . P 6 HOH D 9 3408 48 HOH HOH . P 6 HOH D 10 3409 49 HOH HOH . P 6 HOH D 11 3410 62 HOH HOH . P 6 HOH D 12 3411 63 HOH HOH . Q 6 HOH R 1 600 50 HOH HOH . Q 6 HOH R 2 601 51 HOH HOH . Q 6 HOH R 3 602 64 HOH HOH . R 6 HOH S 1 601 52 HOH HOH . R 6 HOH S 2 602 53 HOH HOH . R 6 HOH S 3 603 54 HOH HOH . R 6 HOH S 4 604 55 HOH HOH . R 6 HOH S 5 605 56 HOH HOH . R 6 HOH S 6 606 57 HOH HOH . R 6 HOH S 7 607 58 HOH HOH . R 6 HOH S 8 608 59 HOH HOH . R 6 HOH S 9 609 60 HOH HOH . R 6 HOH S 10 610 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . L 5 -5.597 58.433 -1.988 1 46.77 ? P AMP 600 S 1 HETATM 2 O O1P AMP . . . L 5 -6.186 58.71 -3.352 1 45.14 ? O1P AMP 600 S 1 HETATM 3 O O2P AMP . . . L 5 -6.487 57.686 -1.024 1 45.82 ? O2P AMP 600 S 1 HETATM 4 O O3P AMP . . . L 5 -4.163 57.965 -2.08 1 44.01 ? O3P AMP 600 S 1 HETATM 5 O O5' AMP . . . L 5 -5.556 59.846 -1.23 1 45.65 ? O5' AMP 600 S 1 HETATM 6 C C5' AMP . . . L 5 -4.583 60.816 -1.582 1 45.25 ? C5' AMP 600 S 1 HETATM 7 C C4' AMP . . . L 5 -5.083 62.138 -1.066 1 44.92 ? C4' AMP 600 S 1 HETATM 8 O O4' AMP . . . L 5 -6.512 62.171 -1.116 1 43.58 ? O4' AMP 600 S 1 HETATM 9 C C3' AMP . . . L 5 -4.676 62.382 0.387 1 44.83 ? C3' AMP 600 S 1 HETATM 10 O O3' AMP . . . L 5 -3.351 62.923 0.542 1 44.4 ? O3' AMP 600 S 1 HETATM 11 C C2' AMP . . . L 5 -5.756 63.337 0.846 1 44.51 ? C2' AMP 600 S 1 HETATM 12 O O2' AMP . . . L 5 -5.383 64.693 0.597 1 41.63 ? O2' AMP 600 S 1 HETATM 13 C C1' AMP . . . L 5 -6.965 62.917 0.011 1 45.43 ? C1' AMP 600 S 1 HETATM 14 N N9 AMP . . . L 5 -7.789 62 0.815 1 46.35 ? N9 AMP 600 S 1 HETATM 15 C C8 AMP . . . L 5 -7.848 60.656 0.712 1 46.37 ? C8 AMP 600 S 1 HETATM 16 N N7 AMP . . . L 5 -8.719 60.158 1.623 1 46.09 ? N7 AMP 600 S 1 HETATM 17 C C5 AMP . . . L 5 -9.219 61.18 2.324 1 44.75 ? C5 AMP 600 S 1 HETATM 18 C C6 AMP . . . L 5 -10.174 61.327 3.426 1 45.3 ? C6 AMP 600 S 1 HETATM 19 N N6 AMP . . . L 5 -10.802 60.272 4 1 45.8 ? N6 AMP 600 S 1 HETATM 20 N N1 AMP . . . L 5 -10.393 62.575 3.842 1 46.24 ? N1 AMP 600 S 1 HETATM 21 C C2 AMP . . . L 5 -9.792 63.653 3.292 1 46.57 ? C2 AMP 600 S 1 HETATM 22 N N3 AMP . . . L 5 -8.913 63.582 2.281 1 45.96 ? N3 AMP 600 S 1 HETATM 23 C C4 AMP . . . L 5 -8.6 62.387 1.783 1 45.71 ? C4 AMP 600 S 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #