data_2A25
#
_model_server_result.job_id            LbRZJ6aJquDV8u3BOk3QVw 
_model_server_result.datetime_utc      '2024-12-21 12:02:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2a25 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    2A25 
#
_exptl.entry_id    2A25 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2A25 
_cell.length_a            47.635 
_cell.length_b            107.761 
_cell.length_c            78.414 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2A25 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 47.635 0 39.207 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 39 A CYS 128 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc2 A SG CYS 46 A CYS 135 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc3 A NE2 HIS 58 A HIS 147 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc4 A NE2 HIS 63 A HIS 152 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2A25 
_atom_sites.fract_transf_matrix[1][1]    0.020993 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00928 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012753 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 601 601 ZN ZN . 
D 4 HOH A 1 602 1 HOH HOH . 
D 4 HOH A 2 603 2 HOH HOH . 
D 4 HOH A 3 604 3 HOH HOH . 
D 4 HOH A 4 605 4 HOH HOH . 
D 4 HOH A 5 606 5 HOH HOH . 
D 4 HOH A 6 607 6 HOH HOH . 
D 4 HOH A 7 608 7 HOH HOH . 
D 4 HOH A 8 609 8 HOH HOH . 
D 4 HOH A 9 610 9 HOH HOH . 
D 4 HOH A 10 611 11 HOH HOH . 
D 4 HOH A 11 612 12 HOH HOH . 
D 4 HOH A 12 613 13 HOH HOH . 
D 4 HOH A 13 614 14 HOH HOH . 
D 4 HOH A 14 615 16 HOH HOH . 
D 4 HOH A 15 616 17 HOH HOH . 
D 4 HOH A 16 617 18 HOH HOH . 
D 4 HOH A 17 618 19 HOH HOH . 
D 4 HOH A 18 619 20 HOH HOH . 
D 4 HOH A 19 620 21 HOH HOH . 
D 4 HOH A 20 621 22 HOH HOH . 
D 4 HOH A 21 622 23 HOH HOH . 
D 4 HOH A 22 623 24 HOH HOH . 
D 4 HOH A 23 624 25 HOH HOH . 
D 4 HOH A 24 625 27 HOH HOH . 
D 4 HOH A 25 626 29 HOH HOH . 
D 4 HOH A 26 627 30 HOH HOH . 
D 4 HOH A 27 628 31 HOH HOH . 
D 4 HOH A 28 629 33 HOH HOH . 
D 4 HOH A 29 630 34 HOH HOH . 
D 4 HOH A 30 631 35 HOH HOH . 
D 4 HOH A 31 632 36 HOH HOH . 
D 4 HOH A 32 633 37 HOH HOH . 
D 4 HOH A 33 634 39 HOH HOH . 
D 4 HOH A 34 635 40 HOH HOH . 
D 4 HOH A 35 636 41 HOH HOH . 
D 4 HOH A 36 637 42 HOH HOH . 
D 4 HOH A 37 638 43 HOH HOH . 
D 4 HOH A 38 639 45 HOH HOH . 
D 4 HOH A 39 640 46 HOH HOH . 
D 4 HOH A 40 641 47 HOH HOH . 
D 4 HOH A 41 642 48 HOH HOH . 
D 4 HOH A 42 643 49 HOH HOH . 
D 4 HOH A 43 644 50 HOH HOH . 
D 4 HOH A 44 645 51 HOH HOH . 
D 4 HOH A 45 646 52 HOH HOH . 
D 4 HOH A 46 647 53 HOH HOH . 
D 4 HOH A 47 648 54 HOH HOH . 
D 4 HOH A 48 649 55 HOH HOH . 
D 4 HOH A 49 650 56 HOH HOH . 
D 4 HOH A 50 651 57 HOH HOH . 
D 4 HOH A 51 652 58 HOH HOH . 
D 4 HOH A 52 653 59 HOH HOH . 
D 4 HOH A 53 654 60 HOH HOH . 
D 4 HOH A 54 655 62 HOH HOH . 
D 4 HOH A 55 656 63 HOH HOH . 
D 4 HOH A 56 657 64 HOH HOH . 
D 4 HOH A 57 658 65 HOH HOH . 
D 4 HOH A 58 659 66 HOH HOH . 
D 4 HOH A 59 660 67 HOH HOH . 
D 4 HOH A 60 661 68 HOH HOH . 
D 4 HOH A 61 662 69 HOH HOH . 
D 4 HOH A 62 663 70 HOH HOH . 
D 4 HOH A 63 664 71 HOH HOH . 
D 4 HOH A 64 665 72 HOH HOH . 
D 4 HOH A 65 666 73 HOH HOH . 
D 4 HOH A 66 667 74 HOH HOH . 
D 4 HOH A 67 668 75 HOH HOH . 
D 4 HOH A 68 669 76 HOH HOH . 
D 4 HOH A 69 670 77 HOH HOH . 
D 4 HOH A 70 671 78 HOH HOH . 
D 4 HOH A 71 672 79 HOH HOH . 
D 4 HOH A 72 673 80 HOH HOH . 
D 4 HOH A 73 674 81 HOH HOH . 
D 4 HOH A 74 675 82 HOH HOH . 
D 4 HOH A 75 676 83 HOH HOH . 
D 4 HOH A 76 677 84 HOH HOH . 
D 4 HOH A 77 678 85 HOH HOH . 
D 4 HOH A 78 679 88 HOH HOH . 
D 4 HOH A 79 680 89 HOH HOH . 
D 4 HOH A 80 681 90 HOH HOH . 
D 4 HOH A 81 682 91 HOH HOH . 
D 4 HOH A 82 683 92 HOH HOH . 
D 4 HOH A 83 684 93 HOH HOH . 
D 4 HOH A 84 685 94 HOH HOH . 
D 4 HOH A 85 686 95 HOH HOH . 
D 4 HOH A 86 687 96 HOH HOH . 
D 4 HOH A 87 688 97 HOH HOH . 
D 4 HOH A 88 689 98 HOH HOH . 
D 4 HOH A 89 690 99 HOH HOH . 
D 4 HOH A 90 691 100 HOH HOH . 
E 4 HOH B 1 71 10 HOH HOH . 
E 4 HOH B 2 72 15 HOH HOH . 
E 4 HOH B 3 73 26 HOH HOH . 
E 4 HOH B 4 74 28 HOH HOH . 
E 4 HOH B 5 75 32 HOH HOH . 
E 4 HOH B 6 76 38 HOH HOH . 
E 4 HOH B 7 77 44 HOH HOH . 
E 4 HOH B 8 78 61 HOH HOH . 
E 4 HOH B 9 79 86 HOH HOH . 
E 4 HOH B 10 80 87 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               4.566 
_atom_site.Cartn_y               31.145 
_atom_site.Cartn_z               -3.225 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        23.67 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           601 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           471 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#