data_2A3F # _model_server_result.job_id TYkd2jNYLAwmpZihMTAjzQ _model_server_result.datetime_utc '2024-12-25 10:18:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a3f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 2A3F # _exptl.entry_id 2A3F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2A3F _cell.length_a 39.608 _cell.length_b 125.773 _cell.length_c 33.395 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A3F _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 X CYS 2 1_555 A SG CYS 122 X CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? disulf ? disulf2 A SG CYS 40 X CYS 39 1_555 A SG CYS 171 X CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc1 A NE2 HIS 58 X HIS 57 1_555 B FE HEM . X HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc2 C O HOH . X HOH 181 1_555 B FE HEM . X HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 2A3F _atom_sites.fract_transf_matrix[1][1] 0.025247 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007951 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029945 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM X 1 201 201 HEM HEM . C 3 HOH X 1 181 181 HOH HOH . C 3 HOH X 2 182 182 HOH HOH . C 3 HOH X 3 183 183 HOH HOH . C 3 HOH X 4 184 184 HOH HOH . C 3 HOH X 5 185 185 HOH HOH . C 3 HOH X 6 186 186 HOH HOH . C 3 HOH X 7 187 187 HOH HOH . C 3 HOH X 8 188 188 HOH HOH . C 3 HOH X 9 189 189 HOH HOH . C 3 HOH X 10 190 190 HOH HOH . C 3 HOH X 11 191 191 HOH HOH . C 3 HOH X 12 192 192 HOH HOH . C 3 HOH X 13 193 193 HOH HOH . C 3 HOH X 14 194 194 HOH HOH . C 3 HOH X 15 195 195 HOH HOH . C 3 HOH X 16 196 196 HOH HOH . C 3 HOH X 17 197 197 HOH HOH . C 3 HOH X 18 198 198 HOH HOH . C 3 HOH X 19 203 203 HOH HOH . C 3 HOH X 20 204 204 HOH HOH . C 3 HOH X 21 206 206 HOH HOH . C 3 HOH X 22 208 208 HOH HOH . C 3 HOH X 23 209 209 HOH HOH . C 3 HOH X 24 210 210 HOH HOH . C 3 HOH X 25 211 211 HOH HOH . C 3 HOH X 26 212 212 HOH HOH . C 3 HOH X 27 213 213 HOH HOH . C 3 HOH X 28 214 214 HOH HOH . C 3 HOH X 29 215 215 HOH HOH . C 3 HOH X 30 216 216 HOH HOH . C 3 HOH X 31 217 217 HOH HOH . C 3 HOH X 32 218 218 HOH HOH . C 3 HOH X 33 219 219 HOH HOH . C 3 HOH X 34 220 220 HOH HOH . C 3 HOH X 35 221 221 HOH HOH . C 3 HOH X 36 222 222 HOH HOH . C 3 HOH X 37 223 223 HOH HOH . C 3 HOH X 38 224 224 HOH HOH . C 3 HOH X 39 225 225 HOH HOH . C 3 HOH X 40 226 226 HOH HOH . C 3 HOH X 41 227 227 HOH HOH . C 3 HOH X 42 228 228 HOH HOH . C 3 HOH X 43 229 229 HOH HOH . C 3 HOH X 44 230 230 HOH HOH . C 3 HOH X 45 231 231 HOH HOH . C 3 HOH X 46 232 232 HOH HOH . C 3 HOH X 47 233 233 HOH HOH . C 3 HOH X 48 234 234 HOH HOH . C 3 HOH X 49 235 235 HOH HOH . C 3 HOH X 50 236 236 HOH HOH . C 3 HOH X 51 239 239 HOH HOH . C 3 HOH X 52 240 240 HOH HOH . C 3 HOH X 53 241 241 HOH HOH . C 3 HOH X 54 242 242 HOH HOH . C 3 HOH X 55 243 243 HOH HOH . C 3 HOH X 56 244 244 HOH HOH . C 3 HOH X 57 245 245 HOH HOH . C 3 HOH X 58 246 246 HOH HOH . C 3 HOH X 59 247 247 HOH HOH . C 3 HOH X 60 248 248 HOH HOH . C 3 HOH X 61 249 249 HOH HOH . C 3 HOH X 62 250 250 HOH HOH . C 3 HOH X 63 251 251 HOH HOH . C 3 HOH X 64 252 252 HOH HOH . C 3 HOH X 65 253 253 HOH HOH . C 3 HOH X 66 255 255 HOH HOH . C 3 HOH X 67 256 256 HOH HOH . C 3 HOH X 68 259 259 HOH HOH . C 3 HOH X 69 262 262 HOH HOH . C 3 HOH X 70 263 263 HOH HOH . C 3 HOH X 71 265 265 HOH HOH . C 3 HOH X 72 266 266 HOH HOH . C 3 HOH X 73 267 267 HOH HOH . C 3 HOH X 74 268 268 HOH HOH . C 3 HOH X 75 400 400 HOH HOH . C 3 HOH X 76 401 401 HOH HOH . C 3 HOH X 77 402 402 HOH HOH . C 3 HOH X 78 403 403 HOH HOH . C 3 HOH X 79 404 404 HOH HOH . C 3 HOH X 80 405 405 HOH HOH . C 3 HOH X 81 406 406 HOH HOH . C 3 HOH X 82 407 407 HOH HOH . C 3 HOH X 83 408 408 HOH HOH . C 3 HOH X 84 409 409 HOH HOH . C 3 HOH X 85 410 410 HOH HOH . C 3 HOH X 86 411 411 HOH HOH . C 3 HOH X 87 412 412 HOH HOH . C 3 HOH X 88 413 413 HOH HOH . C 3 HOH X 89 415 415 HOH HOH . C 3 HOH X 90 416 416 HOH HOH . C 3 HOH X 91 417 417 HOH HOH . C 3 HOH X 92 418 418 HOH HOH . C 3 HOH X 93 419 419 HOH HOH . C 3 HOH X 94 420 420 HOH HOH . C 3 HOH X 95 421 421 HOH HOH . C 3 HOH X 96 422 422 HOH HOH . C 3 HOH X 97 423 423 HOH HOH . C 3 HOH X 98 424 424 HOH HOH . C 3 HOH X 99 425 425 HOH HOH . C 3 HOH X 100 426 426 HOH HOH . C 3 HOH X 101 427 427 HOH HOH . C 3 HOH X 102 428 428 HOH HOH . C 3 HOH X 103 429 429 HOH HOH . C 3 HOH X 104 430 430 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 24.824 76.469 27.494 1 18.39 ? CHA HEM 201 X 1 HETATM 2 C CHB HEM . . . B 2 22.713 79.756 30.289 1 19.54 ? CHB HEM 201 X 1 HETATM 3 C CHC HEM . . . B 2 19.991 81.026 26.607 1 17.66 ? CHC HEM 201 X 1 HETATM 4 C CHD HEM . . . B 2 20.844 76.691 24.683 1 18.35 ? CHD HEM 201 X 1 HETATM 5 C C1A HEM . . . B 2 24.525 77.209 28.601 1 19.26 ? C1A HEM 201 X 1 HETATM 6 C C2A HEM . . . B 2 25.228 77.239 29.821 1 22.75 ? C2A HEM 201 X 1 HETATM 7 C C3A HEM . . . B 2 24.628 78.098 30.616 1 20.98 ? C3A HEM 201 X 1 HETATM 8 C C4A HEM . . . B 2 23.552 78.714 29.889 1 19.2 ? C4A HEM 201 X 1 HETATM 9 C CMA HEM . . . B 2 25 78.422 32.054 1 22.71 ? CMA HEM 201 X 1 HETATM 10 C CAA HEM . . . B 2 26.441 76.366 30.118 1 24.62 ? CAA HEM 201 X 1 HETATM 11 C CBA HEM . . . B 2 26.083 74.927 30.492 1 30.4 ? CBA HEM 201 X 1 HETATM 12 C CGA HEM . . . B 2 27.354 74.17 30.755 1 34.42 ? CGA HEM 201 X 1 HETATM 13 O O1A HEM . . . B 2 27.457 72.979 30.375 1 41.37 ? O1A HEM 201 X 1 HETATM 14 O O2A HEM . . . B 2 28.29 74.763 31.322 1 37.32 ? O2A HEM 201 X 1 HETATM 15 C C1B HEM . . . B 2 21.915 80.503 29.501 1 19.06 ? C1B HEM 201 X 1 HETATM 16 C C2B HEM . . . B 2 21.414 81.834 29.754 1 16.92 ? C2B HEM 201 X 1 HETATM 17 C C3B HEM . . . B 2 20.647 82.188 28.721 1 17.89 ? C3B HEM 201 X 1 HETATM 18 C C4B HEM . . . B 2 20.705 81.136 27.764 1 15.7 ? C4B HEM 201 X 1 HETATM 19 C CMB HEM . . . B 2 21.585 82.525 31.093 1 19.14 ? CMB HEM 201 X 1 HETATM 20 C CAB HEM . . . B 2 19.898 83.516 28.459 1 18.22 ? CAB HEM 201 X 1 HETATM 21 C CBB HEM . . . B 2 20.389 84.667 28.79 1 18.85 ? CBB HEM 201 X 1 HETATM 22 C C1C HEM . . . B 2 19.889 79.908 25.799 1 18.08 ? C1C HEM 201 X 1 HETATM 23 C C2C HEM . . . B 2 19.051 79.733 24.679 1 17.29 ? C2C HEM 201 X 1 HETATM 24 C C3C HEM . . . B 2 19.29 78.516 24.13 1 17.01 ? C3C HEM 201 X 1 HETATM 25 C C4C HEM . . . B 2 20.239 77.886 24.937 1 16.43 ? C4C HEM 201 X 1 HETATM 26 C CMC HEM . . . B 2 18.112 80.819 24.183 1 19.57 ? CMC HEM 201 X 1 HETATM 27 C CAC HEM . . . B 2 18.648 77.813 22.932 1 18.25 ? CAC HEM 201 X 1 HETATM 28 C CBC HEM . . . B 2 17.768 78.349 22.095 1 21.91 ? CBC HEM 201 X 1 HETATM 29 C C1D HEM . . . B 2 22.059 76.312 25.204 1 17.29 ? C1D HEM 201 X 1 HETATM 30 C C2D HEM . . . B 2 22.919 75.25 24.669 1 18.22 ? C2D HEM 201 X 1 HETATM 31 C C3D HEM . . . B 2 24.113 75.249 25.498 1 20.86 ? C3D HEM 201 X 1 HETATM 32 C C4D HEM . . . B 2 23.923 76.233 26.506 0.5 11.63 ? C4D HEM 201 X 1 HETATM 33 C CMD HEM . . . B 2 22.653 74.373 23.442 1 18.92 ? CMD HEM 201 X 1 HETATM 34 C CAD HEM . A . B 2 25.254 74.247 25.381 0.5 22.43 ? CAD HEM 201 X 1 HETATM 35 C CAD HEM . B . B 2 25.336 74.379 25.195 0.5 21.76 ? CAD HEM 201 X 1 HETATM 36 C CBD HEM . A . B 2 26.406 74.884 24.681 0.5 20.88 ? CBD HEM 201 X 1 HETATM 37 C CBD HEM . B . B 2 25.626 73.259 26.161 0.5 20.21 ? CBD HEM 201 X 1 HETATM 38 C CGD HEM . A . B 2 27.576 73.95 24.43 0.5 21.55 ? CGD HEM 201 X 1 HETATM 39 C CGD HEM . B . B 2 26.946 72.596 25.862 0.5 23.79 ? CGD HEM 201 X 1 HETATM 40 O O1D HEM . A . B 2 28.354 74.142 23.445 0.5 23.35 ? O1D HEM 201 X 1 HETATM 41 O O1D HEM . B . B 2 27.962 73.356 25.716 0.5 22.35 ? O1D HEM 201 X 1 HETATM 42 O O2D HEM . A . B 2 27.771 73.018 25.245 0.5 24.56 ? O2D HEM 201 X 1 HETATM 43 O O2D HEM . B . B 2 26.896 71.305 25.843 0.5 24.1 ? O2D HEM 201 X 1 HETATM 44 N NA HEM . . . B 2 23.505 78.13 28.679 1 19.21 ? NA HEM 201 X 1 HETATM 45 N NB HEM . . . B 2 21.47 80.091 28.268 1 17.78 ? NB HEM 201 X 1 HETATM 46 N NC HEM . . . B 2 20.626 78.758 25.935 1 17.31 ? NC HEM 201 X 1 HETATM 47 N ND HEM . . . B 2 22.719 76.862 26.294 1 17.06 ? ND HEM 201 X 1 HETATM 48 FE FE HEM . . . B 2 22.143 78.533 27.249 1 16.94 ? FE HEM 201 X 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #