data_2A3M # _model_server_result.job_id JkmGT3joISGzli8_rjMwcw _model_server_result.datetime_utc '2025-01-22 01:35:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a3m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 2A3M # _exptl.entry_id 2A3M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2A3M _cell.length_a 43.67 _cell.length_b 43.876 _cell.length_c 57.729 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A3M _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 52 A CYS 29 1_555 B CAB HEC . A HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? covale ? covale2 A SG CYS 55 A CYS 32 1_555 B CAC HEC . A HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? covale ? covale3 A SG CYS 68 A CYS 45 1_555 C CAB HEC . A HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale4 A SG CYS 73 A CYS 50 1_555 C CAC HEC . A HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? covale ? covale5 A SG CYS 102 A CYS 79 1_555 D CAB HEC . A HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.892 ? covale ? covale6 A SG CYS 105 A CYS 82 1_555 D CAC HEC . A HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? covale ? covale7 A SG CYS 123 A CYS 100 1_555 E CAB HEC . A HEC 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? covale ? covale8 A SG CYS 128 A CYS 105 1_555 E CAC HEC . A HEC 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc1 A NE2 HIS 44 A HIS 21 1_555 B FE HEC . A HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc2 A NE2 HIS 47 A HIS 24 1_555 D FE HEC . A HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc3 A NE2 HIS 56 A HIS 33 1_555 B FE HEC . A HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc4 A NE2 HIS 57 A HIS 34 1_555 C FE HEC . A HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc5 A NE2 HIS 74 A HIS 51 1_555 C FE HEC . A HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc6 A NE2 HIS 92 A HIS 69 1_555 E FE HEC . A HEC 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc7 A NE2 HIS 106 A HIS 83 1_555 D FE HEC . A HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc8 A NE2 HIS 129 A HIS 106 1_555 E FE HEC . A HEC 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 2A3M _atom_sites.fract_transf_matrix[1][1] 0.022899 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022792 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017322 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 501 501 HEC HEM . C 2 HEC A 1 502 502 HEC HEM . D 2 HEC A 1 503 503 HEC HEM . E 2 HEC A 1 504 504 HEC HEM . F 3 HOH A 1 505 1 HOH HOH . F 3 HOH A 2 506 2 HOH HOH . F 3 HOH A 3 507 3 HOH HOH . F 3 HOH A 4 508 4 HOH HOH . F 3 HOH A 5 509 5 HOH HOH . F 3 HOH A 6 510 6 HOH HOH . F 3 HOH A 7 511 7 HOH HOH . F 3 HOH A 8 512 8 HOH HOH . F 3 HOH A 9 513 9 HOH HOH . F 3 HOH A 10 514 10 HOH HOH . F 3 HOH A 11 515 11 HOH HOH . F 3 HOH A 12 516 12 HOH HOH . F 3 HOH A 13 517 13 HOH HOH . F 3 HOH A 14 518 14 HOH HOH . F 3 HOH A 15 519 15 HOH HOH . F 3 HOH A 16 520 16 HOH HOH . F 3 HOH A 17 521 17 HOH HOH . F 3 HOH A 18 522 18 HOH HOH . F 3 HOH A 19 523 19 HOH HOH . F 3 HOH A 20 524 20 HOH HOH . F 3 HOH A 21 525 21 HOH HOH . F 3 HOH A 22 526 22 HOH HOH . F 3 HOH A 23 527 23 HOH HOH . F 3 HOH A 24 528 24 HOH HOH . F 3 HOH A 25 529 25 HOH HOH . F 3 HOH A 26 530 26 HOH HOH . F 3 HOH A 27 531 27 HOH HOH . F 3 HOH A 28 532 28 HOH HOH . F 3 HOH A 29 533 29 HOH HOH . F 3 HOH A 30 534 30 HOH HOH . F 3 HOH A 31 535 31 HOH HOH . F 3 HOH A 32 536 32 HOH HOH . F 3 HOH A 33 537 33 HOH HOH . F 3 HOH A 34 538 34 HOH HOH . F 3 HOH A 35 539 35 HOH HOH . F 3 HOH A 36 540 36 HOH HOH . F 3 HOH A 37 541 37 HOH HOH . F 3 HOH A 38 542 38 HOH HOH . F 3 HOH A 39 543 39 HOH HOH . F 3 HOH A 40 544 40 HOH HOH . F 3 HOH A 41 545 41 HOH HOH . F 3 HOH A 42 546 42 HOH HOH . F 3 HOH A 43 547 43 HOH HOH . F 3 HOH A 44 548 44 HOH HOH . F 3 HOH A 45 549 45 HOH HOH . F 3 HOH A 46 550 46 HOH HOH . F 3 HOH A 47 551 47 HOH HOH . F 3 HOH A 48 552 48 HOH HOH . F 3 HOH A 49 553 49 HOH HOH . F 3 HOH A 50 554 50 HOH HOH . F 3 HOH A 51 555 51 HOH HOH . F 3 HOH A 52 556 52 HOH HOH . F 3 HOH A 53 557 53 HOH HOH . F 3 HOH A 54 558 54 HOH HOH . F 3 HOH A 55 559 55 HOH HOH . F 3 HOH A 56 560 56 HOH HOH . F 3 HOH A 57 561 57 HOH HOH . F 3 HOH A 58 562 58 HOH HOH . F 3 HOH A 59 563 59 HOH HOH . F 3 HOH A 60 564 60 HOH HOH . F 3 HOH A 61 565 61 HOH HOH . F 3 HOH A 62 566 62 HOH HOH . F 3 HOH A 63 567 63 HOH HOH . F 3 HOH A 64 568 64 HOH HOH . F 3 HOH A 65 569 65 HOH HOH . F 3 HOH A 66 570 66 HOH HOH . F 3 HOH A 67 571 67 HOH HOH . F 3 HOH A 68 572 68 HOH HOH . F 3 HOH A 69 573 69 HOH HOH . F 3 HOH A 70 574 70 HOH HOH . F 3 HOH A 71 575 71 HOH HOH . F 3 HOH A 72 576 72 HOH HOH . F 3 HOH A 73 577 73 HOH HOH . F 3 HOH A 74 578 74 HOH HOH . F 3 HOH A 75 579 75 HOH HOH . F 3 HOH A 76 580 76 HOH HOH . F 3 HOH A 77 581 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . D 2 19.601 5.34 1.702 1 12.17 ? FE HEC 503 A 1 HETATM 2 C CHA HEC . . . D 2 20.835 7.344 -0.769 1 14.8 ? CHA HEC 503 A 1 HETATM 3 C CHB HEC . . . D 2 17.078 4.314 -0.422 1 11.09 ? CHB HEC 503 A 1 HETATM 4 C CHC HEC . . . D 2 18.501 3.155 4.069 1 11.12 ? CHC HEC 503 A 1 HETATM 5 C CHD HEC . . . D 2 21.888 6.577 3.936 1 13.34 ? CHD HEC 503 A 1 HETATM 6 N NA HEC . . . D 2 19.102 5.716 -0.243 1 11.71 ? NA HEC 503 A 1 HETATM 7 C C1A HEC . . . D 2 19.699 6.642 -1.062 1 11.18 ? C1A HEC 503 A 1 HETATM 8 C C2A HEC . . . D 2 18.929 6.765 -2.283 1 11.66 ? C2A HEC 503 A 1 HETATM 9 C C3A HEC . . . D 2 17.889 5.933 -2.177 1 12.13 ? C3A HEC 503 A 1 HETATM 10 C C4A HEC . . . D 2 17.98 5.244 -0.903 1 11.39 ? C4A HEC 503 A 1 HETATM 11 C CMA HEC . . . D 2 16.774 5.685 -3.205 1 14.56 ? CMA HEC 503 A 1 HETATM 12 C CAA HEC . . . D 2 19.275 7.721 -3.449 1 12.72 ? CAA HEC 503 A 1 HETATM 13 C CBA HEC . . . D 2 20.423 7.153 -4.284 1 13.72 ? CBA HEC 503 A 1 HETATM 14 C CGA HEC . . . D 2 19.982 5.887 -4.966 1 15.39 ? CGA HEC 503 A 1 HETATM 15 O O1A HEC . . . D 2 19.02 5.939 -5.774 1 16.83 ? O1A HEC 503 A 1 HETATM 16 O O2A HEC . . . D 2 20.571 4.815 -4.695 1 16.25 ? O2A HEC 503 A 1 HETATM 17 N NB HEC . . . D 2 18.093 3.978 1.79 1 10.91 ? NB HEC 503 A 1 HETATM 18 C C1B HEC . . . D 2 17.13 3.736 0.826 1 11.12 ? C1B HEC 503 A 1 HETATM 19 C C2B HEC . . . D 2 16.205 2.754 1.35 1 12.5 ? C2B HEC 503 A 1 HETATM 20 C C3B HEC . . . D 2 16.628 2.433 2.586 1 13.64 ? C3B HEC 503 A 1 HETATM 21 C C4B HEC . . . D 2 17.82 3.199 2.879 1 10.98 ? C4B HEC 503 A 1 HETATM 22 C CMB HEC . . . D 2 14.968 2.202 0.589 1 14.27 ? CMB HEC 503 A 1 HETATM 23 C CAB HEC . . . D 2 16.009 1.426 3.565 1 12.79 ? CAB HEC 503 A 1 HETATM 24 C CBB HEC . . . D 2 15.752 0.176 3.122 1 16.41 ? CBB HEC 503 A 1 HETATM 25 N NC HEC . . . D 2 20.095 4.962 3.638 1 10.94 ? NC HEC 503 A 1 HETATM 26 C C1C HEC . . . D 2 19.508 4.001 4.436 1 10.44 ? C1C HEC 503 A 1 HETATM 27 C C2C HEC . . . D 2 20.166 3.974 5.723 1 9.56 ? C2C HEC 503 A 1 HETATM 28 C C3C HEC . . . D 2 21.125 4.931 5.686 1 11.67 ? C3C HEC 503 A 1 HETATM 29 C C4C HEC . . . D 2 21.081 5.567 4.379 1 12.09 ? C4C HEC 503 A 1 HETATM 30 C CMC HEC . . . D 2 19.762 3.028 6.879 1 13 ? CMC HEC 503 A 1 HETATM 31 C CAC HEC . . . D 2 22.105 5.324 6.818 1 13.51 ? CAC HEC 503 A 1 HETATM 32 C CBC HEC . . . D 2 22.403 4.464 7.82 1 11.17 ? CBC HEC 503 A 1 HETATM 33 N ND HEC . . . D 2 21.108 6.706 1.601 1 12.74 ? ND HEC 503 A 1 HETATM 34 C C1D HEC . . . D 2 21.912 7.111 2.668 1 12 ? C1D HEC 503 A 1 HETATM 35 C C2D HEC . . . D 2 22.768 8.19 2.255 1 14.49 ? C2D HEC 503 A 1 HETATM 36 C C3D HEC . . . D 2 22.437 8.439 0.784 1 16.11 ? C3D HEC 503 A 1 HETATM 37 C C4D HEC . . . D 2 21.409 7.466 0.47 1 13.34 ? C4D HEC 503 A 1 HETATM 38 C CMD HEC . . . D 2 23.791 8.932 3.142 1 17.19 ? CMD HEC 503 A 1 HETATM 39 C CAD HEC . . . D 2 23.064 9.491 -0.169 1 20.3 ? CAD HEC 503 A 1 HETATM 40 C CBD HEC . . . D 2 24.122 8.799 -1.025 1 26.93 ? CBD HEC 503 A 1 HETATM 41 C CGD HEC . . . D 2 23.816 8.888 -2.504 1 33.59 ? CGD HEC 503 A 1 HETATM 42 O O1D HEC . . . D 2 24.472 8.15 -3.295 1 35.42 ? O1D HEC 503 A 1 HETATM 43 O O2D HEC . . . D 2 22.928 9.691 -2.912 1 34.95 ? O2D HEC 503 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 43 #