data_2A3P # _model_server_result.job_id xvoGGzLPcWbrIzGyS7fCdQ _model_server_result.datetime_utc '2024-12-25 10:17:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a3p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 2A3P # _exptl.entry_id 2A3P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2A3P _cell.length_a 43.16 _cell.length_b 43.7 _cell.length_c 57.887 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A3P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 52 A CYS 29 1_555 B CAB HEC . A HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.62 ? covale ? covale2 A SG CYS 55 A CYS 32 1_555 B CAC HEC . A HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.635 ? covale ? covale3 A SG CYS 68 A CYS 45 1_555 C CAB HEC . A HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.618 ? covale ? covale4 A SG CYS 73 A CYS 50 1_555 C CAC HEC . A HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.629 ? covale ? covale5 A SG CYS 102 A CYS 79 1_555 D CAB HEC . A HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.618 ? covale ? covale6 A SG CYS 105 A CYS 82 1_555 D CAC HEC . A HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.622 ? covale ? covale7 A SG CYS 123 A CYS 100 1_555 E CAB HEC . A HEC 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.645 ? covale ? covale8 A SG CYS 128 A CYS 105 1_555 E CAC HEC . A HEC 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.635 ? metalc ? metalc1 A NE2 HIS 44 A HIS 21 1_555 B FE HEC . A HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc2 A NE2 HIS 47 A HIS 24 1_555 D FE HEC . A HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? metalc ? metalc3 A NE2 HIS 56 A HIS 33 1_555 B FE HEC . A HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? metalc ? metalc4 A NE2 HIS 57 A HIS 34 1_555 C FE HEC . A HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? metalc ? metalc5 A NE2 HIS 74 A HIS 51 1_555 C FE HEC . A HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? metalc ? metalc6 A NE2 HIS 92 A HIS 69 1_555 E FE HEC . A HEC 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc7 A NE2 HIS 106 A HIS 83 1_555 D FE HEC . A HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? metalc ? metalc8 A NE2 HIS 129 A HIS 106 1_555 E FE HEC . A HEC 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? metalc ? metalc9 F MO MOO . A MOO 113 1_555 E O2A HEC . A HEC 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 2A3P _atom_sites.fract_transf_matrix[1][1] 0.02317 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022883 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017275 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 501 501 HEC HEM . C 2 HEC A 1 502 502 HEC HEM . D 2 HEC A 1 503 503 HEC HEM . E 2 HEC A 1 504 504 HEC HEM . F 3 MOO A 1 113 113 MOO MOO . G 4 HOH A 1 505 1 HOH HOH . G 4 HOH A 2 506 2 HOH HOH . G 4 HOH A 3 507 3 HOH HOH . G 4 HOH A 4 508 4 HOH HOH . G 4 HOH A 5 509 12 HOH HOH . G 4 HOH A 6 510 16 HOH HOH . G 4 HOH A 7 511 28 HOH HOH . G 4 HOH A 8 512 70 HOH HOH . G 4 HOH A 9 513 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . C 2 14.561 -6.502 11.622 1 37.01 ? FE HEC 502 A 1 HETATM 2 C CHA HEC . . . C 2 14.185 -5.075 14.7 1 33.95 ? CHA HEC 502 A 1 HETATM 3 C CHB HEC . . . C 2 15.059 -3.433 10.188 1 34.62 ? CHB HEC 502 A 1 HETATM 4 C CHC HEC . . . C 2 15.374 -8.023 8.595 1 35.3 ? CHC HEC 502 A 1 HETATM 5 C CHD HEC . . . C 2 13.526 -9.568 12.841 1 36.41 ? CHD HEC 502 A 1 HETATM 6 N NA HEC . . . C 2 14.68 -4.606 12.321 1 35.3 ? NA HEC 502 A 1 HETATM 7 C C1A HEC . . . C 2 14.362 -4.23 13.623 1 34.9 ? C1A HEC 502 A 1 HETATM 8 C C2A HEC . . . C 2 14.259 -2.782 13.644 1 37.55 ? C2A HEC 502 A 1 HETATM 9 C C3A HEC . . . C 2 14.498 -2.33 12.395 1 33.89 ? C3A HEC 502 A 1 HETATM 10 C C4A HEC . . . C 2 14.762 -3.467 11.539 1 34.78 ? C4A HEC 502 A 1 HETATM 11 C CMA HEC . . . C 2 14.484 -0.861 11.931 1 33.45 ? CMA HEC 502 A 1 HETATM 12 C CAA HEC . . . C 2 13.911 -1.941 14.898 1 37.78 ? CAA HEC 502 A 1 HETATM 13 C CBA HEC . . . C 2 12.387 -1.912 15.034 1 43.8 ? CBA HEC 502 A 1 HETATM 14 C CGA HEC . . . C 2 11.904 -1.247 16.31 1 47.49 ? CGA HEC 502 A 1 HETATM 15 O O1A HEC . . . C 2 10.901 -1.74 16.912 1 53.87 ? O1A HEC 502 A 1 HETATM 16 O O2A HEC . . . C 2 12.494 -0.219 16.729 1 41.57 ? O2A HEC 502 A 1 HETATM 17 N NB HEC . . . C 2 15.158 -5.851 9.719 1 35.71 ? NB HEC 502 A 1 HETATM 18 C C1B HEC . . . C 2 15.234 -4.521 9.358 1 34.6 ? C1B HEC 502 A 1 HETATM 19 C C2B HEC . . . C 2 15.508 -4.474 7.938 1 35.54 ? C2B HEC 502 A 1 HETATM 20 C C3B HEC . . . C 2 15.596 -5.74 7.467 1 29.23 ? C3B HEC 502 A 1 HETATM 21 C C4B HEC . . . C 2 15.373 -6.634 8.592 1 33.4 ? C4B HEC 502 A 1 HETATM 22 C CMB HEC . . . C 2 15.674 -3.141 7.163 1 29.87 ? CMB HEC 502 A 1 HETATM 23 C CAB HEC . . . C 2 15.892 -6.16 5.997 1 35.25 ? CAB HEC 502 A 1 HETATM 24 C CBB HEC . . . C 2 17.06 -5.834 5.401 1 32.87 ? CBB HEC 502 A 1 HETATM 25 N NC HEC . . . C 2 14.492 -8.464 10.877 1 34.64 ? NC HEC 502 A 1 HETATM 26 C C1C HEC . . . C 2 14.824 -8.843 9.581 1 38.24 ? C1C HEC 502 A 1 HETATM 27 C C2C HEC . . . C 2 14.504 -10.256 9.446 1 35.44 ? C2C HEC 502 A 1 HETATM 28 C C3C HEC . . . C 2 13.991 -10.699 10.602 1 31.54 ? C3C HEC 502 A 1 HETATM 29 C C4C HEC . . . C 2 13.979 -9.571 11.531 1 36.09 ? C4C HEC 502 A 1 HETATM 30 C CMC HEC . . . C 2 14.715 -11.09 8.158 1 35.85 ? CMC HEC 502 A 1 HETATM 31 C CAC HEC . . . C 2 13.484 -12.156 10.863 1 35.08 ? CAC HEC 502 A 1 HETATM 32 C CBC HEC . . . C 2 14.292 -13.147 11.295 1 30.55 ? CBC HEC 502 A 1 HETATM 33 N ND HEC . . . C 2 13.883 -7.215 13.52 1 35.93 ? ND HEC 502 A 1 HETATM 34 C C1D HEC . . . C 2 13.652 -8.561 13.79 1 36.25 ? C1D HEC 502 A 1 HETATM 35 C C2D HEC . . . C 2 13.575 -8.722 15.236 1 39.56 ? C2D HEC 502 A 1 HETATM 36 C C3D HEC . . . C 2 13.789 -7.319 15.826 1 39.51 ? C3D HEC 502 A 1 HETATM 37 C C4D HEC . . . C 2 13.965 -6.441 14.676 1 36.24 ? C4D HEC 502 A 1 HETATM 38 C CMD HEC . . . C 2 13.347 -10.017 16.065 1 34.64 ? CMD HEC 502 A 1 HETATM 39 C CAD HEC . . . C 2 13.787 -7.013 17.35 1 39.95 ? CAD HEC 502 A 1 HETATM 40 C CBD HEC . . . C 2 14.817 -5.976 17.812 1 50.16 ? CBD HEC 502 A 1 HETATM 41 C CGD HEC . . . C 2 16.252 -6.294 17.445 1 54.16 ? CGD HEC 502 A 1 HETATM 42 O O1D HEC . . . C 2 16.628 -7.492 17.311 1 51.7 ? O1D HEC 502 A 1 HETATM 43 O O2D HEC . . . C 2 17.044 -5.316 17.301 1 60.51 ? O2D HEC 502 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #