data_2A3P # _model_server_result.job_id 0NOCWDTVFcv9oxhAB2J6eg _model_server_result.datetime_utc '2024-12-25 11:09:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a3p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 2A3P # _exptl.entry_id 2A3P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2A3P _cell.length_a 43.16 _cell.length_b 43.7 _cell.length_c 57.887 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A3P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 52 A CYS 29 1_555 B CAB HEC . A HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.62 ? covale ? covale2 A SG CYS 55 A CYS 32 1_555 B CAC HEC . A HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.635 ? covale ? covale3 A SG CYS 68 A CYS 45 1_555 C CAB HEC . A HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.618 ? covale ? covale4 A SG CYS 73 A CYS 50 1_555 C CAC HEC . A HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.629 ? covale ? covale5 A SG CYS 102 A CYS 79 1_555 D CAB HEC . A HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.618 ? covale ? covale6 A SG CYS 105 A CYS 82 1_555 D CAC HEC . A HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.622 ? covale ? covale7 A SG CYS 123 A CYS 100 1_555 E CAB HEC . A HEC 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.645 ? covale ? covale8 A SG CYS 128 A CYS 105 1_555 E CAC HEC . A HEC 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.635 ? metalc ? metalc1 A NE2 HIS 44 A HIS 21 1_555 B FE HEC . A HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc2 A NE2 HIS 47 A HIS 24 1_555 D FE HEC . A HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? metalc ? metalc3 A NE2 HIS 56 A HIS 33 1_555 B FE HEC . A HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? metalc ? metalc4 A NE2 HIS 57 A HIS 34 1_555 C FE HEC . A HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? metalc ? metalc5 A NE2 HIS 74 A HIS 51 1_555 C FE HEC . A HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? metalc ? metalc6 A NE2 HIS 92 A HIS 69 1_555 E FE HEC . A HEC 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc7 A NE2 HIS 106 A HIS 83 1_555 D FE HEC . A HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? metalc ? metalc8 A NE2 HIS 129 A HIS 106 1_555 E FE HEC . A HEC 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? metalc ? metalc9 F MO MOO . A MOO 113 1_555 E O2A HEC . A HEC 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 2A3P _atom_sites.fract_transf_matrix[1][1] 0.02317 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022883 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017275 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 501 501 HEC HEM . C 2 HEC A 1 502 502 HEC HEM . D 2 HEC A 1 503 503 HEC HEM . E 2 HEC A 1 504 504 HEC HEM . F 3 MOO A 1 113 113 MOO MOO . G 4 HOH A 1 505 1 HOH HOH . G 4 HOH A 2 506 2 HOH HOH . G 4 HOH A 3 507 3 HOH HOH . G 4 HOH A 4 508 4 HOH HOH . G 4 HOH A 5 509 12 HOH HOH . G 4 HOH A 6 510 16 HOH HOH . G 4 HOH A 7 511 28 HOH HOH . G 4 HOH A 8 512 70 HOH HOH . G 4 HOH A 9 513 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . D 2 19.383 5.279 1.765 1 34.89 ? FE HEC 503 A 1 HETATM 2 C CHA HEC . . . D 2 20.524 7.313 -0.798 1 30.95 ? CHA HEC 503 A 1 HETATM 3 C CHB HEC . . . D 2 16.873 4.154 -0.374 1 33.71 ? CHB HEC 503 A 1 HETATM 4 C CHC HEC . . . D 2 18.28 3.036 4.118 1 33.36 ? CHC HEC 503 A 1 HETATM 5 C CHD HEC . . . D 2 21.615 6.582 3.93 1 29.95 ? CHD HEC 503 A 1 HETATM 6 N NA HEC . . . D 2 18.842 5.616 -0.241 1 30.71 ? NA HEC 503 A 1 HETATM 7 C C1A HEC . . . D 2 19.396 6.574 -1.069 1 32.76 ? C1A HEC 503 A 1 HETATM 8 C C2A HEC . . . D 2 18.576 6.673 -2.265 1 34.9 ? C2A HEC 503 A 1 HETATM 9 C C3A HEC . . . D 2 17.559 5.794 -2.133 1 32.42 ? C3A HEC 503 A 1 HETATM 10 C C4A HEC . . . D 2 17.721 5.114 -0.87 1 32.86 ? C4A HEC 503 A 1 HETATM 11 C CMA HEC . . . D 2 16.405 5.482 -3.115 1 33.43 ? CMA HEC 503 A 1 HETATM 12 C CAA HEC . . . D 2 18.874 7.645 -3.444 1 34.24 ? CAA HEC 503 A 1 HETATM 13 C CBA HEC . . . D 2 19.925 7.115 -4.435 1 30.86 ? CBA HEC 503 A 1 HETATM 14 C CGA HEC . . . D 2 19.534 5.748 -4.95 1 37.01 ? CGA HEC 503 A 1 HETATM 15 O O1A HEC . . . D 2 18.54 5.618 -5.714 1 37.78 ? O1A HEC 503 A 1 HETATM 16 O O2A HEC . . . D 2 20.221 4.758 -4.59 1 43.22 ? O2A HEC 503 A 1 HETATM 17 N NB HEC . . . D 2 17.865 3.832 1.841 1 31.25 ? NB HEC 503 A 1 HETATM 18 C C1B HEC . . . D 2 16.909 3.605 0.882 1 31.63 ? C1B HEC 503 A 1 HETATM 19 C C2B HEC . . . D 2 15.958 2.665 1.407 1 34.29 ? C2B HEC 503 A 1 HETATM 20 C C3B HEC . . . D 2 16.34 2.337 2.659 1 37.09 ? C3B HEC 503 A 1 HETATM 21 C C4B HEC . . . D 2 17.552 3.069 2.947 1 33.51 ? C4B HEC 503 A 1 HETATM 22 C CMB HEC . . . D 2 14.738 2.16 0.604 1 34.77 ? CMB HEC 503 A 1 HETATM 23 C CAB HEC . . . D 2 15.641 1.362 3.647 1 37.89 ? CAB HEC 503 A 1 HETATM 24 C CBB HEC . . . D 2 15.681 0.038 3.417 1 36.9 ? CBB HEC 503 A 1 HETATM 25 N NC HEC . . . D 2 19.868 4.879 3.648 1 29.32 ? NC HEC 503 A 1 HETATM 26 C C1C HEC . . . D 2 19.273 3.934 4.471 1 31.09 ? C1C HEC 503 A 1 HETATM 27 C C2C HEC . . . D 2 19.878 4.046 5.78 1 30.52 ? C2C HEC 503 A 1 HETATM 28 C C3C HEC . . . D 2 20.802 5.033 5.724 1 29.94 ? C3C HEC 503 A 1 HETATM 29 C C4C HEC . . . D 2 20.813 5.563 4.382 1 27.63 ? C4C HEC 503 A 1 HETATM 30 C CMC HEC . . . D 2 19.472 3.159 6.983 1 27.17 ? CMC HEC 503 A 1 HETATM 31 C CAC HEC . . . D 2 21.724 5.55 6.855 1 32.14 ? CAC HEC 503 A 1 HETATM 32 C CBC HEC . . . D 2 22.273 4.673 7.713 1 34.99 ? CBC HEC 503 A 1 HETATM 33 N ND HEC . . . D 2 20.856 6.718 1.588 1 30.78 ? ND HEC 503 A 1 HETATM 34 C C1D HEC . . . D 2 21.651 7.117 2.661 1 32.18 ? C1D HEC 503 A 1 HETATM 35 C C2D HEC . . . D 2 22.523 8.183 2.229 1 30.63 ? C2D HEC 503 A 1 HETATM 36 C C3D HEC . . . D 2 22.173 8.419 0.75 1 31.14 ? C3D HEC 503 A 1 HETATM 37 C C4D HEC . . . D 2 21.13 7.46 0.441 1 32.52 ? C4D HEC 503 A 1 HETATM 38 C CMD HEC . . . D 2 23.557 8.944 3.089 1 31.63 ? CMD HEC 503 A 1 HETATM 39 C CAD HEC . . . D 2 22.795 9.438 -0.235 1 31.78 ? CAD HEC 503 A 1 HETATM 40 C CBD HEC . . . D 2 23.954 8.714 -0.939 1 41.63 ? CBD HEC 503 A 1 HETATM 41 C CGD HEC . . . D 2 23.822 8.619 -2.445 1 45.86 ? CGD HEC 503 A 1 HETATM 42 O O1D HEC . . . D 2 24.592 7.802 -3.038 1 48.16 ? O1D HEC 503 A 1 HETATM 43 O O2D HEC . . . D 2 22.981 9.346 -3.068 1 43.82 ? O2D HEC 503 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #