data_2A3P # _model_server_result.job_id HjWwyHymHcvpTu4MqxUGag _model_server_result.datetime_utc '2024-12-25 10:53:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a3p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 2A3P # _exptl.entry_id 2A3P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2A3P _cell.length_a 43.16 _cell.length_b 43.7 _cell.length_c 57.887 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A3P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 52 A CYS 29 1_555 B CAB HEC . A HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.62 ? covale ? covale2 A SG CYS 55 A CYS 32 1_555 B CAC HEC . A HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.635 ? covale ? covale3 A SG CYS 68 A CYS 45 1_555 C CAB HEC . A HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.618 ? covale ? covale4 A SG CYS 73 A CYS 50 1_555 C CAC HEC . A HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.629 ? covale ? covale5 A SG CYS 102 A CYS 79 1_555 D CAB HEC . A HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.618 ? covale ? covale6 A SG CYS 105 A CYS 82 1_555 D CAC HEC . A HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.622 ? covale ? covale7 A SG CYS 123 A CYS 100 1_555 E CAB HEC . A HEC 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.645 ? covale ? covale8 A SG CYS 128 A CYS 105 1_555 E CAC HEC . A HEC 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.635 ? metalc ? metalc1 A NE2 HIS 44 A HIS 21 1_555 B FE HEC . A HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc2 A NE2 HIS 47 A HIS 24 1_555 D FE HEC . A HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? metalc ? metalc3 A NE2 HIS 56 A HIS 33 1_555 B FE HEC . A HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? metalc ? metalc4 A NE2 HIS 57 A HIS 34 1_555 C FE HEC . A HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? metalc ? metalc5 A NE2 HIS 74 A HIS 51 1_555 C FE HEC . A HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? metalc ? metalc6 A NE2 HIS 92 A HIS 69 1_555 E FE HEC . A HEC 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc7 A NE2 HIS 106 A HIS 83 1_555 D FE HEC . A HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? metalc ? metalc8 A NE2 HIS 129 A HIS 106 1_555 E FE HEC . A HEC 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? metalc ? metalc9 F MO MOO . A MOO 113 1_555 E O2A HEC . A HEC 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 2A3P _atom_sites.fract_transf_matrix[1][1] 0.02317 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022883 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017275 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 501 501 HEC HEM . C 2 HEC A 1 502 502 HEC HEM . D 2 HEC A 1 503 503 HEC HEM . E 2 HEC A 1 504 504 HEC HEM . F 3 MOO A 1 113 113 MOO MOO . G 4 HOH A 1 505 1 HOH HOH . G 4 HOH A 2 506 2 HOH HOH . G 4 HOH A 3 507 3 HOH HOH . G 4 HOH A 4 508 4 HOH HOH . G 4 HOH A 5 509 12 HOH HOH . G 4 HOH A 6 510 16 HOH HOH . G 4 HOH A 7 511 28 HOH HOH . G 4 HOH A 8 512 70 HOH HOH . G 4 HOH A 9 513 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . E 2 7.462 4.767 1.514 1 38.22 ? FE HEC 504 A 1 HETATM 2 C CHA HEC . . . E 2 6.279 1.542 0.749 1 34.31 ? CHA HEC 504 A 1 HETATM 3 C CHB HEC . . . E 2 4.227 5.743 2.057 1 37.6 ? CHB HEC 504 A 1 HETATM 4 C CHC HEC . . . E 2 8.487 7.974 2.105 1 35.4 ? CHC HEC 504 A 1 HETATM 5 C CHD HEC . . . E 2 10.708 3.692 1.201 1 34.51 ? CHD HEC 504 A 1 HETATM 6 N NA HEC . . . E 2 5.595 3.81 1.406 1 38.17 ? NA HEC 504 A 1 HETATM 7 C C1A HEC . . . E 2 5.316 2.492 1.07 1 36.98 ? C1A HEC 504 A 1 HETATM 8 C C2A HEC . . . E 2 3.861 2.339 1.105 1 34.57 ? C2A HEC 504 A 1 HETATM 9 C C3A HEC . . . E 2 3.322 3.497 1.464 1 36.11 ? C3A HEC 504 A 1 HETATM 10 C C4A HEC . . . E 2 4.396 4.443 1.654 1 36.81 ? C4A HEC 504 A 1 HETATM 11 C CMA HEC . . . E 2 1.82 3.808 1.655 1 32.5 ? CMA HEC 504 A 1 HETATM 12 C CAA HEC . . . E 2 3.042 1.067 0.83 1 37.77 ? CAA HEC 504 A 1 HETATM 13 C CBA HEC . . . E 2 2.983 0.325 2.172 1 34.73 ? CBA HEC 504 A 1 HETATM 14 C CGA HEC . . . E 2 2.009 -0.827 2.126 1 39.34 ? CGA HEC 504 A 1 HETATM 15 O O1A HEC . . . E 2 2.037 -1.709 3.038 1 42.88 ? O1A HEC 504 A 1 HETATM 16 O O2A HEC . . . E 2 1.189 -0.871 1.176 1 35.97 ? O2A HEC 504 A 1 HETATM 17 N NB HEC . . . E 2 6.521 6.557 1.972 1 34.33 ? NB HEC 504 A 1 HETATM 18 C C1B HEC . . . E 2 5.189 6.693 2.263 1 33.51 ? C1B HEC 504 A 1 HETATM 19 C C2B HEC . . . E 2 4.948 8.013 2.797 1 34.91 ? C2B HEC 504 A 1 HETATM 20 C C3B HEC . . . E 2 6.118 8.675 2.818 1 35.38 ? C3B HEC 504 A 1 HETATM 21 C C4B HEC . . . E 2 7.135 7.754 2.288 1 38.33 ? C4B HEC 504 A 1 HETATM 22 C CMB HEC . . . E 2 3.553 8.52 3.244 1 30.82 ? CMB HEC 504 A 1 HETATM 23 C CAB HEC . . . E 2 6.315 10.147 3.307 1 38.56 ? CAB HEC 504 A 1 HETATM 24 C CBB HEC . . . E 2 6.267 10.408 4.627 1 34.55 ? CBB HEC 504 A 1 HETATM 25 N NC HEC . . . E 2 9.256 5.655 1.685 1 35.83 ? NC HEC 504 A 1 HETATM 26 C C1C HEC . . . E 2 9.445 7.019 1.813 1 35.39 ? C1C HEC 504 A 1 HETATM 27 C C2C HEC . . . E 2 10.851 7.268 1.597 1 34.15 ? C2C HEC 504 A 1 HETATM 28 C C3C HEC . . . E 2 11.476 6.098 1.353 1 35.48 ? C3C HEC 504 A 1 HETATM 29 C C4C HEC . . . E 2 10.479 5.048 1.406 1 36.7 ? C4C HEC 504 A 1 HETATM 30 C CMC HEC . . . E 2 11.489 8.667 1.644 1 33.49 ? CMC HEC 504 A 1 HETATM 31 C CAC HEC . . . E 2 12.99 5.892 1.047 1 36.89 ? CAC HEC 504 A 1 HETATM 32 C CBC HEC . . . E 2 13.846 6.113 2.052 1 30.24 ? CBC HEC 504 A 1 HETATM 33 N ND HEC . . . E 2 8.376 2.887 0.998 1 36.96 ? ND HEC 504 A 1 HETATM 34 C C1D HEC . . . E 2 9.755 2.693 1.05 1 34.1 ? C1D HEC 504 A 1 HETATM 35 C C2D HEC . . . E 2 10.009 1.27 0.928 1 33.82 ? C2D HEC 504 A 1 HETATM 36 C C3D HEC . . . E 2 8.632 0.612 0.786 1 32.29 ? C3D HEC 504 A 1 HETATM 37 C C4D HEC . . . E 2 7.666 1.685 0.839 1 36.49 ? C4D HEC 504 A 1 HETATM 38 C CMD HEC . . . E 2 11.379 0.557 0.932 1 30.44 ? CMD HEC 504 A 1 HETATM 39 C CAD HEC . . . E 2 8.329 -0.89 0.61 1 35.09 ? CAD HEC 504 A 1 HETATM 40 C CBD HEC . . . E 2 8.625 -1.287 -0.835 1 33.47 ? CBD HEC 504 A 1 HETATM 41 C CGD HEC . . . E 2 7.998 -2.629 -1.129 1 32.33 ? CGD HEC 504 A 1 HETATM 42 O O1D HEC . . . E 2 6.969 -2.665 -1.844 1 26.93 ? O1D HEC 504 A 1 HETATM 43 O O2D HEC . . . E 2 8.528 -3.672 -0.657 1 34.75 ? O2D HEC 504 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #