data_2A45 # _model_server_result.job_id nIRxh21hq6jNcO9bHPvHnA _model_server_result.datetime_utc '2024-12-27 00:26:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a45 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1}' # _entry.id 2A45 # _exptl.entry_id 2A45 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 453.986 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2A45 _cell.length_a 76.263 _cell.length_b 76.263 _cell.length_c 192.452 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A45 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 1 1_555 B SG CYS 119 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf2 B SG CYS 28 B CYS 42 1_555 B SG CYS 44 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 B SG CYS 173 B CYS 168 1_555 B SG CYS 187 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 201 B CYS 191 1_555 B SG CYS 231 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 C SG CYS 9 D CYS 1 1_555 D SG CYS 119 E CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf6 D SG CYS 28 E CYS 42 1_555 D SG CYS 44 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf7 D SG CYS 173 E CYS 168 1_555 D SG CYS 187 E CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf8 D SG CYS 201 E CYS 191 1_555 D SG CYS 231 E CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 E SG CYS 12 G CYS 28 1_555 H SG CYS 12 J CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf10 E SG CYS 20 G CYS 36 1_555 I SG CYS 51 K CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 E SG CYS 29 G CYS 45 1_555 G SG CYS 23 I CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf12 E SG CYS 33 G CYS 49 1_555 F SG CYS 62 H CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf13 F SG CYS 51 H CYS 65 1_555 H SG CYS 20 J CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 F SG CYS 66 H CYS 80 1_555 G SG CYS 19 I CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf15 G SG CYS 8 I CYS 8 1_555 J SG CYS 9 L CYS 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf16 G SG CYS 9 I CYS 9 1_555 J SG CYS 8 L CYS 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf17 H SG CYS 29 J CYS 45 1_555 J SG CYS 23 L CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf18 H SG CYS 33 J CYS 49 1_555 I SG CYS 62 K CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf19 I SG CYS 66 K CYS 80 1_555 J SG CYS 19 L CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 K C3 0G6 . B 0G6 1 1_555 B NE2 HIS 43 B HIS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.489 ? covale ? covale2 K C2 0G6 . B 0G6 1 1_555 B OG SER 205 B SER 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale3 M C3 0G6 . E 0G6 1 1_555 D NE2 HIS 43 E HIS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.486 ? covale ? covale4 M C2 0G6 . E 0G6 1 1_555 D OG SER 205 E SER 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.418 ? # _chem_comp.formula 'C21 H34 Cl N6 O3 1' _chem_comp.formula_weight 453.986 _chem_comp.id 0G6 _chem_comp.mon_nstd_flag . _chem_comp.name D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms PPACK # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA 0G6 sing 1 n n N H 0G6 sing 2 n n N H2 0G6 sing 3 n n CA C 0G6 sing 4 n n CA CB 0G6 sing 5 n n CA HA 0G6 sing 6 n n C O 0G6 doub 7 n n C N1 0G6 sing 8 n n CB CG 0G6 sing 9 n n CB HB2 0G6 sing 10 n n CB HB3 0G6 sing 11 n n CG CD1 0G6 doub 12 n y CG CD2 0G6 sing 13 n y CD1 CE1 0G6 sing 14 n y CD1 HD1 0G6 sing 15 n n CD2 CE2 0G6 doub 16 n y CD2 HD2 0G6 sing 17 n n CE1 CZ 0G6 doub 18 n y CE1 HE1 0G6 sing 19 n n CE2 CZ 0G6 sing 20 n y CE2 HE2 0G6 sing 21 n n CZ HZ 0G6 sing 22 n n N1 CA1 0G6 sing 23 n n N1 CD 0G6 sing 24 n n CA1 C1 0G6 sing 25 n n CA1 CB1 0G6 sing 26 n n CA1 HA1 0G6 sing 27 n n C1 O1 0G6 doub 28 n n C1 N2 0G6 sing 29 n n CB1 CG1 0G6 sing 30 n n CB1 HB21 0G6 sing 31 n n CB1 HB31 0G6 sing 32 n n CG1 CD 0G6 sing 33 n n CG1 HG2 0G6 sing 34 n n CG1 HG3 0G6 sing 35 n n CD HD21 0G6 sing 36 n n CD HD3 0G6 sing 37 n n N2 CA2 0G6 sing 38 n n N2 H1 0G6 sing 39 n n CA2 C2 0G6 sing 40 n n CA2 CB2 0G6 sing 41 n n CA2 HA2 0G6 sing 42 n n C2 O2 0G6 sing 43 n n C2 C3 0G6 sing 44 n n CB2 CG2 0G6 sing 45 n n CB2 HB22 0G6 sing 46 n n CB2 HB32 0G6 sing 47 n n CG2 CD3 0G6 sing 48 n n CG2 HG21 0G6 sing 49 n n CG2 HG31 0G6 sing 50 n n CD3 NE 0G6 sing 51 n n CD3 HD22 0G6 sing 52 n n CD3 HD31 0G6 sing 53 n n NE CZ1 0G6 sing 54 n n NE HE 0G6 sing 55 n n CZ1 NH1 0G6 sing 56 n n CZ1 NH2 0G6 doub 57 n n NH1 HH11 0G6 sing 58 n n NH1 HH12 0G6 sing 59 n n NH2 HH21 0G6 sing 60 n n NH2 HH22 0G6 sing 61 n n C3 H11 0G6 sing 62 n n C3 H21 0G6 sing 63 n n CL C3 0G6 sing 64 n n C2 H33 0G6 sing 65 n n O2 H34 0G6 sing 66 n n # _atom_sites.entry_id 2A45 _atom_sites.fract_transf_matrix[1][1] 0.013113 _atom_sites.fract_transf_matrix[1][2] 0.007571 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015141 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005196 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 6 0G6 B 1 1 1 0G6 DPN . L 7 PO4 B 1 248 1 PO4 PO4 . M 6 0G6 E 1 1 1 0G6 DPN . N 7 PO4 E 1 2 2 PO4 PO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 0G6 . . . K 6 33.118 11.368 -49.666 1 27.51 ? N 0G6 1 B 1 HETATM 2 C CA 0G6 . . . K 6 32.293 10.65 -50.665 1 27.51 ? CA 0G6 1 B 1 HETATM 3 C C 0G6 . . . K 6 30.859 11.121 -50.391 1 27.51 ? C 0G6 1 B 1 HETATM 4 O O 0G6 . . . K 6 30.596 12.329 -50.369 1 27.51 ? O 0G6 1 B 1 HETATM 5 C CB 0G6 . . . K 6 32.727 11.007 -52.105 1 27.51 ? CB 0G6 1 B 1 HETATM 6 C CG 0G6 . . . K 6 31.983 10.211 -53.193 1 27.51 ? CG 0G6 1 B 1 HETATM 7 C CD1 0G6 . . . K 6 32.574 9.214 -53.953 1 27.51 ? CD1 0G6 1 B 1 HETATM 8 C CD2 0G6 . . . K 6 30.627 10.292 -53.251 1 27.51 ? CD2 0G6 1 B 1 HETATM 9 C CE1 0G6 . . . K 6 31.82 8.307 -54.735 1 27.51 ? CE1 0G6 1 B 1 HETATM 10 C CE2 0G6 . . . K 6 29.828 9.442 -53.995 1 27.51 ? CE2 0G6 1 B 1 HETATM 11 C CZ 0G6 . . . K 6 30.428 8.416 -54.728 1 27.51 ? CZ 0G6 1 B 1 HETATM 12 N N1 0G6 . . . K 6 29.932 10.186 -50.107 1 27.51 ? N1 0G6 1 B 1 HETATM 13 C CA1 0G6 . . . K 6 28.538 10.554 -49.832 1 27.51 ? CA1 0G6 1 B 1 HETATM 14 C C1 0G6 . . . K 6 28.368 11.061 -48.417 1 27.51 ? C1 0G6 1 B 1 HETATM 15 O O1 0G6 . . . K 6 29.215 10.837 -47.544 1 27.51 ? O1 0G6 1 B 1 HETATM 16 C CB1 0G6 . . . K 6 27.798 9.261 -50.014 1 27.51 ? CB1 0G6 1 B 1 HETATM 17 C CG1 0G6 . . . K 6 28.759 8.293 -49.39 1 27.51 ? CG1 0G6 1 B 1 HETATM 18 C CD 0G6 . . . K 6 30.104 8.73 -50.019 1 27.51 ? CD 0G6 1 B 1 HETATM 19 N N2 0G6 . . . K 6 27.264 11.766 -48.194 1 27.51 ? N2 0G6 1 B 1 HETATM 20 C CA2 0G6 . . . K 6 26.942 12.307 -46.858 1 27.51 ? CA2 0G6 1 B 1 HETATM 21 C C2 0G6 . . . K 6 25.521 11.781 -46.617 1 27.51 ? C2 0G6 1 B 1 HETATM 22 O O2 0G6 . . . K 6 25.076 12.063 -45.521 1 27.51 ? O2 0G6 1 B 1 HETATM 23 C CB2 0G6 . . . K 6 26.955 13.857 -46.837 1 27.51 ? CB2 0G6 1 B 1 HETATM 24 C CG2 0G6 . . . K 6 28.269 14.581 -47.353 1 27.51 ? CG2 0G6 1 B 1 HETATM 25 C CD3 0G6 . . . K 6 28.665 14.51 -48.814 1 27.51 ? CD3 0G6 1 B 1 HETATM 26 N NE 0G6 . . . K 6 28.863 15.804 -49.544 1 27.51 ? NE 0G6 1 B 1 HETATM 27 C CZ1 0G6 . . . K 6 28.954 16.996 -49.037 1 27.51 ? CZ1 0G6 1 B 1 HETATM 28 N NH1 0G6 . . . K 6 29.154 18.026 -49.836 1 27.51 ? NH1 0G6 1 B 1 HETATM 29 N NH2 0G6 . . . K 6 28.985 17.132 -47.774 1 27.51 ? NH2 0G6 1 B 1 HETATM 30 C C3 0G6 . . . K 6 25.481 10.222 -46.721 1 27.51 ? C3 0G6 1 B 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 56 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #