data_2A4F # _model_server_result.job_id kuMtPjmxijBxkFymQhf6FA _model_server_result.datetime_utc '2025-03-06 10:50:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a4f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1000}' # _entry.id 2A4F # _exptl.entry_id 2A4F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 641.71 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5R,6R)-5-BENZYL-6-HYDROXY-2,4-BIS(4-HYDROXY-3-METHOXYBENZYL)-1-[3-(4-HYDROXYPHENYL)PROPANOYL]-1,2,4-TRIAZEPAN-3-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2A4F _cell.length_a 58.008 _cell.length_b 85.742 _cell.length_c 46.646 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A4F _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C36 H39 N3 O8' _chem_comp.formula_weight 641.71 _chem_comp.id AAU _chem_comp.mon_nstd_flag . _chem_comp.name (5R,6R)-5-BENZYL-6-HYDROXY-2,4-BIS(4-HYDROXY-3-METHOXYBENZYL)-1-[3-(4-HYDROXYPHENYL)PROPANOYL]-1,2,4-TRIAZEPAN-3-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O2 AAU sing 1 n n C1 H11A AAU sing 2 n n C1 H12A AAU sing 3 n n C1 H13A AAU sing 4 n n O2 C3 AAU sing 5 n n C3 C4 AAU doub 6 n y C3 C46 AAU sing 7 n y C4 C5 AAU sing 8 n y C4 H4 AAU sing 9 n n C5 C6 AAU sing 10 n n C5 C44 AAU doub 11 n y C6 N7 AAU sing 12 n n C6 H61 AAU sing 13 n n C6 H62 AAU sing 14 n n N7 C8 AAU sing 15 n n N7 C31 AAU sing 16 n n C8 C9 AAU sing 17 n n C8 C16 AAU sing 18 n n C8 H8 AAU sing 19 n n C9 C10 AAU sing 20 n n C9 H91 AAU sing 21 n n C9 H92 AAU sing 22 n n C10 C11 AAU doub 23 n y C10 C15 AAU sing 24 n y C11 C12 AAU sing 25 n y C11 H11 AAU sing 26 n n C12 C13 AAU doub 27 n y C12 H12 AAU sing 28 n n C13 C14 AAU sing 29 n y C13 H13 AAU sing 30 n n C14 C15 AAU doub 31 n y C14 H14 AAU sing 32 n n C15 H15 AAU sing 33 n n C16 O17 AAU sing 34 n n C16 C18 AAU sing 35 n n C16 H16 AAU sing 36 n n O17 H17 AAU sing 37 n n C18 N19 AAU sing 38 n n C18 H181 AAU sing 39 n n C18 H182 AAU sing 40 n n N19 N20 AAU sing 41 n n N19 C33 AAU sing 42 n n N20 C21 AAU sing 43 n n N20 C31 AAU sing 44 n n C21 C22 AAU sing 45 n n C21 H211 AAU sing 46 n n C21 H212 AAU sing 47 n n C22 C23 AAU doub 48 n y C22 C30 AAU sing 49 n y C23 C24 AAU sing 50 n y C23 H23 AAU sing 51 n n C24 C25 AAU doub 52 n y C24 H24 AAU sing 53 n n C25 O26 AAU sing 54 n n C25 C27 AAU sing 55 n y O26 H26 AAU sing 56 n n C27 O28 AAU sing 57 n n C27 C30 AAU doub 58 n y O28 C29 AAU sing 59 n n C29 H291 AAU sing 60 n n C29 H292 AAU sing 61 n n C29 H293 AAU sing 62 n n C30 H30 AAU sing 63 n n C31 O32 AAU doub 64 n n C33 O34 AAU doub 65 n n C33 C35 AAU sing 66 n n C35 C36 AAU sing 67 n n C35 H351 AAU sing 68 n n C35 H352 AAU sing 69 n n C36 C37 AAU sing 70 n n C36 H361 AAU sing 71 n n C36 H362 AAU sing 72 n n C37 C38 AAU doub 73 n y C37 C43 AAU sing 74 n y C38 C39 AAU sing 75 n y C38 H38 AAU sing 76 n n C39 C40 AAU doub 77 n y C39 H39 AAU sing 78 n n C40 O41 AAU sing 79 n n C40 C42 AAU sing 80 n y O41 H41 AAU sing 81 n n C42 C43 AAU doub 82 n y C42 H42 AAU sing 83 n n C43 H43 AAU sing 84 n n C44 C45 AAU sing 85 n y C44 H44 AAU sing 86 n n C45 C46 AAU doub 87 n y C45 H45 AAU sing 88 n n C46 O47 AAU sing 89 n n O47 H47 AAU sing 90 n n # _atom_sites.entry_id 2A4F _atom_sites.fract_transf_matrix[1][1] 0.017239 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011663 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021438 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AAU B 1 1000 1000 AAU LIG . D 3 HOH A 1 100 2 HOH TIP . D 3 HOH A 2 101 3 HOH TIP . D 3 HOH A 3 102 10 HOH TIP . D 3 HOH A 4 103 16 HOH TIP . D 3 HOH A 5 104 17 HOH TIP . D 3 HOH A 6 105 24 HOH TIP . D 3 HOH A 7 106 25 HOH TIP . D 3 HOH A 8 107 28 HOH TIP . D 3 HOH A 9 108 31 HOH TIP . D 3 HOH A 10 109 33 HOH TIP . D 3 HOH A 11 110 35 HOH TIP . D 3 HOH A 12 111 38 HOH TIP . D 3 HOH A 13 112 42 HOH TIP . D 3 HOH A 14 113 44 HOH TIP . D 3 HOH A 15 114 45 HOH TIP . D 3 HOH A 16 115 48 HOH TIP . D 3 HOH A 17 116 54 HOH TIP . D 3 HOH A 18 117 55 HOH TIP . D 3 HOH A 19 118 56 HOH TIP . D 3 HOH A 20 119 57 HOH TIP . D 3 HOH A 21 120 58 HOH TIP . D 3 HOH A 22 121 59 HOH TIP . D 3 HOH A 23 122 60 HOH TIP . D 3 HOH A 24 123 61 HOH TIP . D 3 HOH A 25 124 63 HOH TIP . D 3 HOH A 26 125 67 HOH TIP . D 3 HOH A 27 126 69 HOH TIP . D 3 HOH A 28 127 70 HOH TIP . D 3 HOH A 29 128 71 HOH TIP . D 3 HOH A 30 129 75 HOH TIP . D 3 HOH A 31 130 76 HOH TIP . D 3 HOH A 32 131 79 HOH TIP . D 3 HOH A 33 132 80 HOH TIP . D 3 HOH A 34 133 81 HOH TIP . E 3 HOH B 1 1001 1 HOH TIP . E 3 HOH B 2 1002 4 HOH TIP . E 3 HOH B 3 1003 5 HOH TIP . E 3 HOH B 4 1004 6 HOH TIP . E 3 HOH B 5 1005 7 HOH TIP . E 3 HOH B 6 1006 8 HOH TIP . E 3 HOH B 7 1007 9 HOH TIP . E 3 HOH B 8 1008 11 HOH TIP . E 3 HOH B 9 1009 12 HOH TIP . E 3 HOH B 10 1010 13 HOH TIP . E 3 HOH B 11 1011 14 HOH TIP . E 3 HOH B 12 1012 15 HOH TIP . E 3 HOH B 13 1013 18 HOH TIP . E 3 HOH B 14 1014 19 HOH TIP . E 3 HOH B 15 1015 20 HOH TIP . E 3 HOH B 16 1016 21 HOH TIP . E 3 HOH B 17 1017 22 HOH TIP . E 3 HOH B 18 1018 23 HOH TIP . E 3 HOH B 19 1019 26 HOH TIP . E 3 HOH B 20 1020 27 HOH TIP . E 3 HOH B 21 1021 29 HOH TIP . E 3 HOH B 22 1022 30 HOH TIP . E 3 HOH B 23 1023 32 HOH TIP . E 3 HOH B 24 1024 34 HOH TIP . E 3 HOH B 25 1025 36 HOH TIP . E 3 HOH B 26 1026 37 HOH TIP . E 3 HOH B 27 1027 39 HOH TIP . E 3 HOH B 28 1028 40 HOH TIP . E 3 HOH B 29 1029 41 HOH TIP . E 3 HOH B 30 1030 43 HOH TIP . E 3 HOH B 31 1031 46 HOH TIP . E 3 HOH B 32 1032 47 HOH TIP . E 3 HOH B 33 1033 49 HOH TIP . E 3 HOH B 34 1034 50 HOH TIP . E 3 HOH B 35 1035 51 HOH TIP . E 3 HOH B 36 1036 52 HOH TIP . E 3 HOH B 37 1037 53 HOH TIP . E 3 HOH B 38 1038 62 HOH TIP . E 3 HOH B 39 1039 64 HOH TIP . E 3 HOH B 40 1040 65 HOH TIP . E 3 HOH B 41 1041 66 HOH TIP . E 3 HOH B 42 1042 68 HOH TIP . E 3 HOH B 43 1043 72 HOH TIP . E 3 HOH B 44 1044 73 HOH TIP . E 3 HOH B 45 1045 74 HOH TIP . E 3 HOH B 46 1046 77 HOH TIP . E 3 HOH B 47 1047 78 HOH TIP . E 3 HOH B 48 1048 82 HOH TIP . E 3 HOH B 49 1049 83 HOH TIP . E 3 HOH B 50 1050 84 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AAU . . . C 2 18.386 18.203 5.595 1 17.45 ? C1 AAU 1000 B 1 HETATM 2 O O2 AAU . . . C 2 18.127 18.526 4.228 1 17.68 ? O2 AAU 1000 B 1 HETATM 3 C C3 AAU . . . C 2 16.806 18.895 3.861 1 14.19 ? C3 AAU 1000 B 1 HETATM 4 C C4 AAU . . . C 2 15.782 19.274 4.804 1 13.92 ? C4 AAU 1000 B 1 HETATM 5 C C5 AAU . . . C 2 14.485 19.631 4.359 1 14.5 ? C5 AAU 1000 B 1 HETATM 6 C C6 AAU . . . C 2 13.444 20.003 5.382 1 15.63 ? C6 AAU 1000 B 1 HETATM 7 N N7 AAU . . . C 2 13.109 21.431 5.694 1 17.73 ? N7 AAU 1000 B 1 HETATM 8 C C8 AAU . . . C 2 14.157 22.516 5.603 1 19.83 ? C8 AAU 1000 B 1 HETATM 9 C C9 AAU . . . C 2 14.53 23.094 7.007 1 20.35 ? C9 AAU 1000 B 1 HETATM 10 C C10 AAU . . . C 2 14.925 22.032 8.009 1 21.93 ? C10 AAU 1000 B 1 HETATM 11 C C11 AAU . . . C 2 13.97 21.492 8.909 1 21.95 ? C11 AAU 1000 B 1 HETATM 12 C C12 AAU . . . C 2 14.341 20.488 9.84 1 22.47 ? C12 AAU 1000 B 1 HETATM 13 C C13 AAU . . . C 2 15.672 20.011 9.882 1 22.55 ? C13 AAU 1000 B 1 HETATM 14 C C14 AAU . . . C 2 16.639 20.538 8.995 1 22.67 ? C14 AAU 1000 B 1 HETATM 15 C C15 AAU . . . C 2 16.263 21.543 8.064 1 22.42 ? C15 AAU 1000 B 1 HETATM 16 C C16 AAU . . . C 2 13.778 23.658 4.586 1 19.91 ? C16 AAU 1000 B 1 HETATM 17 O O17 AAU . . . C 2 14.812 24.595 4.606 1 21.54 ? O17 AAU 1000 B 1 HETATM 18 C C18 AAU . . . C 2 12.471 24.436 4.85 1 19.92 ? C18 AAU 1000 B 1 HETATM 19 N N19 AAU . . . C 2 11.362 23.492 4.795 1 20.35 ? N19 AAU 1000 B 1 HETATM 20 N N20 AAU . . . C 2 11.102 22.785 5.833 1 19.15 ? N20 AAU 1000 B 1 HETATM 21 C C21 AAU . . . C 2 9.963 23.118 6.736 1 15.87 ? C21 AAU 1000 B 1 HETATM 22 C C22 AAU . . . C 2 9.786 24.535 7.16 1 13.68 ? C22 AAU 1000 B 1 HETATM 23 C C23 AAU . . . C 2 10.504 25.03 8.271 1 12.23 ? C23 AAU 1000 B 1 HETATM 24 C C24 AAU . . . C 2 10.336 26.372 8.685 1 12.16 ? C24 AAU 1000 B 1 HETATM 25 C C25 AAU . . . C 2 9.452 27.215 7.985 1 11.79 ? C25 AAU 1000 B 1 HETATM 26 O O26 AAU . . . C 2 9.302 28.519 8.413 1 7.29 ? O26 AAU 1000 B 1 HETATM 27 C C27 AAU . . . C 2 8.719 26.742 6.853 1 13.21 ? C27 AAU 1000 B 1 HETATM 28 O O28 AAU . . . C 2 7.864 27.655 6.215 1 14.36 ? O28 AAU 1000 B 1 HETATM 29 C C29 AAU . . . C 2 7.458 27.37 4.882 1 17.38 ? C29 AAU 1000 B 1 HETATM 30 C C30 AAU . . . C 2 8.902 25.379 6.453 1 13.71 ? C30 AAU 1000 B 1 HETATM 31 C C31 AAU . . . C 2 11.804 21.626 6.134 1 18.18 ? C31 AAU 1000 B 1 HETATM 32 O O32 AAU . . . C 2 11.259 20.738 6.804 1 20.46 ? O32 AAU 1000 B 1 HETATM 33 C C33 AAU . . . C 2 10.547 23.204 3.685 1 24.03 ? C33 AAU 1000 B 1 HETATM 34 O O34 AAU . . . C 2 9.988 22.103 3.649 1 24.45 ? O34 AAU 1000 B 1 HETATM 35 C C35 AAU . . . C 2 10.284 24.166 2.461 1 26.41 ? C35 AAU 1000 B 1 HETATM 36 C C36 AAU . . . C 2 8.921 23.745 1.78 1 30.45 ? C36 AAU 1000 B 1 HETATM 37 C C37 AAU . . . C 2 7.531 24.313 2.059 1 33.28 ? C37 AAU 1000 B 1 HETATM 38 C C38 AAU . . . C 2 6.788 23.69 3.112 1 34.34 ? C38 AAU 1000 B 1 HETATM 39 C C39 AAU . . . C 2 5.485 24.128 3.46 1 35.52 ? C39 AAU 1000 B 1 HETATM 40 C C40 AAU . . . C 2 4.897 25.197 2.764 1 35.13 ? C40 AAU 1000 B 1 HETATM 41 O O41 AAU . . . C 2 3.625 25.606 3.121 1 31.07 ? O41 AAU 1000 B 1 HETATM 42 C C42 AAU . . . C 2 5.605 25.834 1.719 1 35.16 ? C42 AAU 1000 B 1 HETATM 43 C C43 AAU . . . C 2 6.921 25.392 1.367 1 34.19 ? C43 AAU 1000 B 1 HETATM 44 C C44 AAU . . . C 2 14.189 19.618 2.992 1 14 ? C44 AAU 1000 B 1 HETATM 45 C C45 AAU . . . C 2 15.186 19.247 2.045 1 12.34 ? C45 AAU 1000 B 1 HETATM 46 C C46 AAU . . . C 2 16.478 18.89 2.493 1 13.2 ? C46 AAU 1000 B 1 HETATM 47 O O47 AAU . . . C 2 17.429 18.532 1.553 1 9.63 ? O47 AAU 1000 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 47 #