data_2A57 # _model_server_result.job_id igf9vidhuJ66grJpc0Wgww _model_server_result.datetime_utc '2025-03-04 16:06:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a57 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":300}' # _entry.id 2A57 # _exptl.entry_id 2A57 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.314 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[8-((2S,3S,4R)-2,3,4,5-TETRAHYDROXYPENTYL)-2,4,7-TRIOXO-1,3,8-TRIHYDROPTERIDIN-6-YL]PROPANOIC ACID' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2A57 _cell.length_a 111.13 _cell.length_b 144.89 _cell.length_c 128.31 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A57 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA pentameric 5 author_and_software_defined_assembly 1 PISA decameric 10 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 111.13 0 64.155 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 I N N ? 2 J N N ? 2 L N N ? 2 O N N # _chem_comp.formula 'C14 H18 N4 O9' _chem_comp.formula_weight 386.314 _chem_comp.id CRM _chem_comp.mon_nstd_flag . _chem_comp.name '3-[8-((2S,3S,4R)-2,3,4,5-TETRAHYDROXYPENTYL)-2,4,7-TRIOXO-1,3,8-TRIHYDROPTERIDIN-6-YL]PROPANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CARBOXYETHYLLUMAZINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 O15 CRM doub 70 n n C2 N3 CRM sing 71 n y C2 N1 CRM sing 72 n y N3 C4 CRM sing 73 n y N3 H3 CRM sing 74 n n C4 N10 CRM sing 75 n y C4 C5 CRM doub 76 n y N10 C17 CRM sing 77 n n N10 C9 CRM sing 78 n y C17 C18 CRM sing 79 n n C17 H171 CRM sing 80 n n C17 H172 CRM sing 81 n n C18 C20 CRM sing 82 n n C18 O19 CRM sing 83 n n C18 H18 CRM sing 84 n n C20 C22 CRM sing 85 n n C20 O21 CRM sing 86 n n C20 H20 CRM sing 87 n n C22 C25 CRM sing 88 n n C22 O23 CRM sing 89 n n C22 H22 CRM sing 90 n n C25 O26 CRM sing 91 n n C25 H251 CRM sing 92 n n C25 H252 CRM sing 93 n n O26 H26 CRM sing 94 n n O23 H23 CRM sing 95 n n O21 H21 CRM sing 96 n n O19 H19 CRM sing 97 n n C9 O16 CRM doub 98 n n C9 C8 CRM sing 99 n y C8 C11 CRM sing 100 n n C8 N7 CRM doub 101 n y C11 C12 CRM sing 102 n n C11 H111 CRM sing 103 n n C11 H112 CRM sing 104 n n C12 C13 CRM sing 105 n n C12 H121 CRM sing 106 n n C12 H122 CRM sing 107 n n C13 O28 CRM sing 108 n n C13 O27 CRM doub 109 n n O28 H28 CRM sing 110 n n N7 C5 CRM sing 111 n y C5 C6 CRM sing 112 n y C6 O14 CRM doub 113 n n C6 N1 CRM sing 114 n y N1 H1 CRM sing 115 n n # _atom_sites.entry_id 2A57 _atom_sites.fract_transf_matrix[1][1] 0.008998 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006902 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007794 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 CRM A 1 300 300 CRM CRM . G 3 PO4 B 1 500 500 PO4 PO4 . H 3 PO4 B 1 501 501 PO4 PO4 . I 2 CRM B 1 301 301 CRM CRM . J 2 CRM C 1 302 302 CRM CRM . K 3 PO4 D 1 502 502 PO4 PO4 . L 2 CRM D 1 303 303 CRM CRM . M 3 PO4 E 1 503 503 PO4 PO4 . N 3 PO4 E 1 504 504 PO4 PO4 . O 2 CRM E 1 304 304 CRM CRM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 CRM . . . F 2 75.915 43.353 42.561 1 51.58 ? C2 CRM 300 A 1 HETATM 2 O O15 CRM . . . F 2 76.878 42.615 42.636 1 52.99 ? O15 CRM 300 A 1 HETATM 3 N N3 CRM . . . F 2 75.988 44.575 41.936 1 51.73 ? N3 CRM 300 A 1 HETATM 4 C C4 CRM . . . F 2 74.945 45.504 41.788 1 52.21 ? C4 CRM 300 A 1 HETATM 5 N N10 CRM . . . F 2 75.041 46.719 41.15 1 51.12 ? N10 CRM 300 A 1 HETATM 6 C C17 CRM . . . F 2 76.271 47.225 40.512 1 49.85 ? C17 CRM 300 A 1 HETATM 7 C C18 CRM . . . F 2 76.949 46.663 39.246 1 49.51 ? C18 CRM 300 A 1 HETATM 8 C C20 CRM . . . F 2 78.194 47.543 38.862 1 52.04 ? C20 CRM 300 A 1 HETATM 9 C C22 CRM . . . F 2 77.825 49.015 38.44 1 49.63 ? C22 CRM 300 A 1 HETATM 10 C C25 CRM . . . F 2 78.904 49.792 37.642 1 50.6 ? C25 CRM 300 A 1 HETATM 11 O O26 CRM . . . F 2 79.437 49.037 36.539 1 52.43 ? O26 CRM 300 A 1 HETATM 12 O O23 CRM . . . F 2 76.661 48.987 37.616 1 49.22 ? O23 CRM 300 A 1 HETATM 13 O O21 CRM . . . F 2 79.099 47.634 39.993 1 55.3 ? O21 CRM 300 A 1 HETATM 14 O O19 CRM . . . F 2 77.36 45.337 39.584 1 48.04 ? O19 CRM 300 A 1 HETATM 15 C C9 CRM . . . F 2 73.955 47.572 41.044 1 54.5 ? C9 CRM 300 A 1 HETATM 16 O O16 CRM . . . F 2 74.004 48.674 40.469 1 57.54 ? O16 CRM 300 A 1 HETATM 17 C C8 CRM . . . F 2 72.593 47.21 41.631 1 57.05 ? C8 CRM 300 A 1 HETATM 18 C C11 CRM . . . F 2 71.275 48.05 41.593 1 58.42 ? C11 CRM 300 A 1 HETATM 19 N N7 CRM . . . F 2 72.563 46.026 42.236 1 55.74 ? N7 CRM 300 A 1 HETATM 20 C C5 CRM . . . F 2 73.732 45.11 42.349 1 52.16 ? C5 CRM 300 A 1 HETATM 21 C C6 CRM . . . F 2 73.596 43.783 43.047 1 54.18 ? C6 CRM 300 A 1 HETATM 22 O O14 CRM . . . F 2 72.525 43.454 43.529 1 58.76 ? O14 CRM 300 A 1 HETATM 23 N N1 CRM . . . F 2 74.706 42.974 43.114 1 52.62 ? N1 CRM 300 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #