data_2A57
#
_model_server_result.job_id            ZtJzagPiwqHWoEKQ0erFMA 
_model_server_result.datetime_utc      '2025-03-04 16:09:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2a57 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":302}' 
#
_entry.id    2A57 
#
_exptl.entry_id    2A57 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              386.314 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-[8-((2S,3S,4R)-2,3,4,5-TETRAHYDROXYPENTYL)-2,4,7-TRIOXO-1,3,8-TRIHYDROPTERIDIN-6-YL]PROPANOIC ACID' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2A57 
_cell.length_a            111.13 
_cell.length_b            144.89 
_cell.length_c            128.31 
_cell.Z_PDB               40 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2A57 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA pentameric 5 author_and_software_defined_assembly 1 
PISA decameric 10 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 111.13 0 64.155 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 I N N 
? 2 J N N 
? 2 L N N 
? 2 O N N 
#
_chem_comp.formula           'C14 H18 N4 O9' 
_chem_comp.formula_weight    386.314 
_chem_comp.id                CRM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-[8-((2S,3S,4R)-2,3,4,5-TETRAHYDROXYPENTYL)-2,4,7-TRIOXO-1,3,8-TRIHYDROPTERIDIN-6-YL]PROPANOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     CARBOXYETHYLLUMAZINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 O15 CRM doub 70 n n 
C2 N3 CRM sing 71 n y 
C2 N1 CRM sing 72 n y 
N3 C4 CRM sing 73 n y 
N3 H3 CRM sing 74 n n 
C4 N10 CRM sing 75 n y 
C4 C5 CRM doub 76 n y 
N10 C17 CRM sing 77 n n 
N10 C9 CRM sing 78 n y 
C17 C18 CRM sing 79 n n 
C17 H171 CRM sing 80 n n 
C17 H172 CRM sing 81 n n 
C18 C20 CRM sing 82 n n 
C18 O19 CRM sing 83 n n 
C18 H18 CRM sing 84 n n 
C20 C22 CRM sing 85 n n 
C20 O21 CRM sing 86 n n 
C20 H20 CRM sing 87 n n 
C22 C25 CRM sing 88 n n 
C22 O23 CRM sing 89 n n 
C22 H22 CRM sing 90 n n 
C25 O26 CRM sing 91 n n 
C25 H251 CRM sing 92 n n 
C25 H252 CRM sing 93 n n 
O26 H26 CRM sing 94 n n 
O23 H23 CRM sing 95 n n 
O21 H21 CRM sing 96 n n 
O19 H19 CRM sing 97 n n 
C9 O16 CRM doub 98 n n 
C9 C8 CRM sing 99 n y 
C8 C11 CRM sing 100 n n 
C8 N7 CRM doub 101 n y 
C11 C12 CRM sing 102 n n 
C11 H111 CRM sing 103 n n 
C11 H112 CRM sing 104 n n 
C12 C13 CRM sing 105 n n 
C12 H121 CRM sing 106 n n 
C12 H122 CRM sing 107 n n 
C13 O28 CRM sing 108 n n 
C13 O27 CRM doub 109 n n 
O28 H28 CRM sing 110 n n 
N7 C5 CRM sing 111 n y 
C5 C6 CRM sing 112 n y 
C6 O14 CRM doub 113 n n 
C6 N1 CRM sing 114 n y 
N1 H1 CRM sing 115 n n 
#
_atom_sites.entry_id                     2A57 
_atom_sites.fract_transf_matrix[1][1]    0.008998 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006902 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007794 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 CRM A 1 300 300 CRM CRM . 
G 3 PO4 B 1 500 500 PO4 PO4 . 
H 3 PO4 B 1 501 501 PO4 PO4 . 
I 2 CRM B 1 301 301 CRM CRM . 
J 2 CRM C 1 302 302 CRM CRM . 
K 3 PO4 D 1 502 502 PO4 PO4 . 
L 2 CRM D 1 303 303 CRM CRM . 
M 3 PO4 E 1 503 503 PO4 PO4 . 
N 3 PO4 E 1 504 504 PO4 PO4 . 
O 2 CRM E 1 304 304 CRM CRM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 CRM . . . J 2 64.287 19.267 16.826 1 54.25 ? C2 CRM 302 C 1 
HETATM 2 O O15 CRM . . . J 2 64.728 19.578 15.732 1 57.03 ? O15 CRM 302 C 1 
HETATM 3 N N3 CRM . . . J 2 65.061 18.602 17.762 1 51.58 ? N3 CRM 302 C 1 
HETATM 4 C C4 CRM . . . J 2 64.652 18.202 19.035 1 50.99 ? C4 CRM 302 C 1 
HETATM 5 N N10 CRM . . . J 2 65.435 17.548 19.94 1 51.85 ? N10 CRM 302 C 1 
HETATM 6 C C17 CRM . . . J 2 66.849 17.181 19.702 1 52.02 ? C17 CRM 302 C 1 
HETATM 7 C C18 CRM . . . J 2 68.05 18.15 19.594 1 51.97 ? C18 CRM 302 C 1 
HETATM 8 C C20 CRM . . . J 2 69.387 17.34 19.416 1 51.35 ? C20 CRM 302 C 1 
HETATM 9 C C22 CRM . . . J 2 69.769 16.482 20.66 1 49.54 ? C22 CRM 302 C 1 
HETATM 10 C C25 CRM . . . J 2 71.244 16.015 20.755 1 51.06 ? C25 CRM 302 C 1 
HETATM 11 O O26 CRM . . . J 2 72.202 17.061 20.548 1 51.95 ? O26 CRM 302 C 1 
HETATM 12 O O23 CRM . . . J 2 69.516 17.224 21.842 1 47.29 ? O23 CRM 302 C 1 
HETATM 13 O O21 CRM . . . J 2 69.266 16.408 18.326 1 56.22 ? O21 CRM 302 C 1 
HETATM 14 O O19 CRM . . . J 2 67.766 18.943 18.439 1 51.24 ? O19 CRM 302 C 1 
HETATM 15 C C9 CRM . . . J 2 64.955 17.178 21.198 1 53.62 ? C9 CRM 302 C 1 
HETATM 16 O O16 CRM . . . J 2 65.638 16.584 22.051 1 54.3 ? O16 CRM 302 C 1 
HETATM 17 C C8 CRM . . . J 2 63.531 17.478 21.629 1 56.07 ? C8 CRM 302 C 1 
HETATM 18 C C11 CRM . . . J 2 62.851 17.131 22.993 1 55.14 ? C11 CRM 302 C 1 
HETATM 19 N N7 CRM . . . J 2 62.814 18.119 20.702 1 56.25 ? N7 CRM 302 C 1 
HETATM 20 C C5 CRM . . . J 2 63.328 18.512 19.36 1 52.74 ? C5 CRM 302 C 1 
HETATM 21 C C6 CRM . . . J 2 62.43 19.242 18.385 1 55.46 ? C6 CRM 302 C 1 
HETATM 22 O O14 CRM . . . J 2 61.269 19.517 18.689 1 54.12 ? O14 CRM 302 C 1 
HETATM 23 N N1 CRM . . . J 2 62.971 19.579 17.158 1 55.73 ? N1 CRM 302 C 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           23 
#