data_2A58 # _model_server_result.job_id IrLC0U5bV-UL5WySGssuHw _model_server_result.datetime_utc '2025-03-04 16:27:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a58 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":504}' # _entry.id 2A58 # _exptl.entry_id 2A58 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2A58 _cell.length_a 111.64 _cell.length_b 145.13 _cell.length_c 129.2 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A58 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA pentameric 5 author_and_software_defined_assembly 1 PISA decameric 10 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 111.64 0 64.6 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 H N N ? 2 J N N ? 2 L N N ? 2 N N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 247 n n P O2 PO4 sing 248 n n P O3 PO4 sing 249 n n P O4 PO4 sing 250 n n # _atom_sites.entry_id 2A58 _atom_sites.fract_transf_matrix[1][1] 0.008957 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00689 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00774 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 PO4 A 1 504 504 PO4 PO4 . G 3 RBF A 1 300 300 RBF RBF . H 2 PO4 B 1 500 500 PO4 PO4 . I 3 RBF B 1 301 301 RBF RBF . J 2 PO4 C 1 501 501 PO4 PO4 . K 3 RBF C 1 302 302 RBF RBF . L 2 PO4 D 1 502 502 PO4 PO4 . M 3 RBF D 1 303 303 RBF RBF . N 2 PO4 E 1 503 503 PO4 PO4 . O 3 RBF E 1 304 304 RBF RBF . P 4 HOH A 1 505 1 HOH TIP . P 4 HOH A 2 506 7 HOH TIP . P 4 HOH A 3 507 17 HOH TIP . P 4 HOH A 4 508 18 HOH TIP . P 4 HOH A 5 509 22 HOH TIP . P 4 HOH A 6 510 39 HOH TIP . P 4 HOH A 7 511 40 HOH TIP . Q 4 HOH B 1 501 12 HOH TIP . Q 4 HOH B 2 502 24 HOH TIP . Q 4 HOH B 3 503 38 HOH TIP . R 4 HOH C 1 502 9 HOH TIP . R 4 HOH C 2 503 10 HOH TIP . R 4 HOH C 3 504 11 HOH TIP . R 4 HOH C 4 505 20 HOH TIP . R 4 HOH C 5 506 23 HOH TIP . R 4 HOH C 6 507 26 HOH TIP . R 4 HOH C 7 508 28 HOH TIP . R 4 HOH C 8 509 35 HOH TIP . S 4 HOH D 1 503 16 HOH TIP . S 4 HOH D 2 504 30 HOH TIP . S 4 HOH D 3 505 31 HOH TIP . S 4 HOH D 4 506 32 HOH TIP . S 4 HOH D 5 507 33 HOH TIP . S 4 HOH D 6 508 36 HOH TIP . S 4 HOH D 7 509 37 HOH TIP . T 4 HOH E 1 504 4 HOH TIP . T 4 HOH E 2 505 13 HOH TIP . T 4 HOH E 3 506 27 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . F 2 67.466 48.601 41.378 1 53.7 ? P PO4 504 A 1 HETATM 2 O O1 PO4 . . . F 2 68.634 47.832 41.854 1 55.33 ? O1 PO4 504 A 1 HETATM 3 O O2 PO4 . . . F 2 67.922 49.898 40.837 1 53.88 ? O2 PO4 504 A 1 HETATM 4 O O3 PO4 . . . F 2 66.766 47.84 40.313 1 52.24 ? O3 PO4 504 A 1 HETATM 5 O O4 PO4 . . . F 2 66.535 48.835 42.514 1 56.37 ? O4 PO4 504 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #