data_2A59 # _model_server_result.job_id 4POuz9W91o-fBRtfycjoUA _model_server_result.datetime_utc '2025-03-04 16:30:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a59 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":502}' # _entry.id 2A59 # _exptl.entry_id 2A59 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2A59 _cell.length_a 111.15 _cell.length_b 144.81 _cell.length_c 127.78 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A59 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 H N N ? 2 J N N ? 2 L N N ? 2 N N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 281 n n P O2 PO4 sing 282 n n P O3 PO4 sing 283 n n P O4 PO4 sing 284 n n # _atom_sites.entry_id 2A59 _atom_sites.fract_transf_matrix[1][1] 0.008997 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006906 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007826 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 PO4 A 1 504 504 PO4 PO4 . G 3 LMZ A 1 300 300 LMZ LMZ . H 2 PO4 B 1 500 500 PO4 PO4 . I 3 LMZ B 1 301 301 LMZ LMZ . J 2 PO4 C 1 501 501 PO4 PO4 . K 3 LMZ C 1 302 302 LMZ LMZ . L 2 PO4 D 1 502 502 PO4 PO4 . M 3 LMZ D 1 303 303 LMZ LMZ . N 2 PO4 E 1 503 503 PO4 PO4 . O 3 LMZ E 1 304 304 LMZ LMZ . P 4 HOH A 1 505 2 HOH TIP . P 4 HOH A 2 506 9 HOH TIP . P 4 HOH A 3 507 16 HOH TIP . P 4 HOH A 4 508 18 HOH TIP . P 4 HOH A 5 509 20 HOH TIP . P 4 HOH A 6 510 25 HOH TIP . P 4 HOH A 7 511 27 HOH TIP . P 4 HOH A 8 512 30 HOH TIP . P 4 HOH A 9 513 32 HOH TIP . P 4 HOH A 10 514 34 HOH TIP . P 4 HOH A 11 515 39 HOH TIP . P 4 HOH A 12 516 42 HOH TIP . P 4 HOH A 13 517 44 HOH TIP . P 4 HOH A 14 518 45 HOH TIP . P 4 HOH A 15 519 49 HOH TIP . P 4 HOH A 16 520 52 HOH TIP . Q 4 HOH B 1 501 3 HOH TIP . Q 4 HOH B 2 502 6 HOH TIP . Q 4 HOH B 3 503 13 HOH TIP . Q 4 HOH B 4 504 15 HOH TIP . Q 4 HOH B 5 505 19 HOH TIP . Q 4 HOH B 6 506 29 HOH TIP . Q 4 HOH B 7 507 36 HOH TIP . Q 4 HOH B 8 508 38 HOH TIP . Q 4 HOH B 9 509 41 HOH TIP . Q 4 HOH B 10 510 54 HOH TIP . Q 4 HOH B 11 511 55 HOH TIP . Q 4 HOH B 12 512 56 HOH TIP . R 4 HOH C 1 502 1 HOH TIP . R 4 HOH C 2 503 7 HOH TIP . R 4 HOH C 3 504 8 HOH TIP . R 4 HOH C 4 505 14 HOH TIP . R 4 HOH C 5 506 21 HOH TIP . R 4 HOH C 6 507 22 HOH TIP . R 4 HOH C 7 508 31 HOH TIP . R 4 HOH C 8 509 33 HOH TIP . R 4 HOH C 9 510 37 HOH TIP . R 4 HOH C 10 511 46 HOH TIP . R 4 HOH C 11 512 48 HOH TIP . R 4 HOH C 12 513 57 HOH TIP . R 4 HOH C 13 514 58 HOH TIP . S 4 HOH D 1 503 4 HOH TIP . S 4 HOH D 2 504 5 HOH TIP . S 4 HOH D 3 505 12 HOH TIP . S 4 HOH D 4 506 17 HOH TIP . S 4 HOH D 5 507 28 HOH TIP . S 4 HOH D 6 508 35 HOH TIP . S 4 HOH D 7 509 43 HOH TIP . S 4 HOH D 8 510 53 HOH TIP . T 4 HOH E 1 504 10 HOH TIP . T 4 HOH E 2 505 11 HOH TIP . T 4 HOH E 3 506 23 HOH TIP . T 4 HOH E 4 507 24 HOH TIP . T 4 HOH E 5 508 26 HOH TIP . T 4 HOH E 6 509 40 HOH TIP . T 4 HOH E 7 510 47 HOH TIP . T 4 HOH E 8 511 50 HOH TIP . T 4 HOH E 9 512 51 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . L 2 54.349 33.678 12.896 1 42.18 ? P PO4 502 D 1 HETATM 2 O O1 PO4 . . . L 2 54.989 34.913 12.382 1 42.16 ? O1 PO4 502 D 1 HETATM 3 O O2 PO4 . . . L 2 54.731 32.522 12.04 1 40.88 ? O2 PO4 502 D 1 HETATM 4 O O3 PO4 . . . L 2 54.816 33.432 14.303 1 40.88 ? O3 PO4 502 D 1 HETATM 5 O O4 PO4 . . . L 2 52.862 33.843 12.87 1 38.72 ? O4 PO4 502 D 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #