data_2A5A # _model_server_result.job_id pOCw-qtCK6LYjA78s-wmzg _model_server_result.datetime_utc '2025-01-11 07:50:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a5a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":309}' # _entry.id 2A5A # _exptl.entry_id 2A5A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.87 _cell.angle_gamma 90 _cell.entry_id 2A5A _cell.length_a 107.758 _cell.length_b 82.14 _cell.length_c 53.128 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A5A _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -13.634067 0 51.348774 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 2A5A _atom_sites.fract_transf_matrix[1][1] 0.00928 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002464 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012174 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 307 202 CL CL . C 2 CL A 1 308 203 CL CL . D 3 EDO A 1 309 201 EDO EGL . E 4 HOH A 1 310 1 HOH HOH . E 4 HOH A 2 311 2 HOH HOH . E 4 HOH A 3 312 3 HOH HOH . E 4 HOH A 4 313 4 HOH HOH . E 4 HOH A 5 314 5 HOH HOH . E 4 HOH A 6 315 6 HOH HOH . E 4 HOH A 7 316 7 HOH HOH . E 4 HOH A 8 317 8 HOH HOH . E 4 HOH A 9 318 9 HOH HOH . E 4 HOH A 10 319 10 HOH HOH . E 4 HOH A 11 320 11 HOH HOH . E 4 HOH A 12 321 12 HOH HOH . E 4 HOH A 13 322 14 HOH HOH . E 4 HOH A 14 323 15 HOH HOH . E 4 HOH A 15 324 16 HOH HOH . E 4 HOH A 16 325 17 HOH HOH . E 4 HOH A 17 326 18 HOH HOH . E 4 HOH A 18 327 19 HOH HOH . E 4 HOH A 19 328 20 HOH HOH . E 4 HOH A 20 329 21 HOH HOH . E 4 HOH A 21 330 22 HOH HOH . E 4 HOH A 22 331 23 HOH HOH . E 4 HOH A 23 332 24 HOH HOH . E 4 HOH A 24 333 25 HOH HOH . E 4 HOH A 25 334 26 HOH HOH . E 4 HOH A 26 335 27 HOH HOH . E 4 HOH A 27 336 28 HOH HOH . E 4 HOH A 28 337 29 HOH HOH . E 4 HOH A 29 338 30 HOH HOH . E 4 HOH A 30 339 31 HOH HOH . E 4 HOH A 31 340 32 HOH HOH . E 4 HOH A 32 341 33 HOH HOH . E 4 HOH A 33 342 34 HOH HOH . E 4 HOH A 34 343 35 HOH HOH . E 4 HOH A 35 344 36 HOH HOH . E 4 HOH A 36 345 37 HOH HOH . E 4 HOH A 37 346 38 HOH HOH . E 4 HOH A 38 347 39 HOH HOH . E 4 HOH A 39 348 40 HOH HOH . E 4 HOH A 40 349 41 HOH HOH . E 4 HOH A 41 350 42 HOH HOH . E 4 HOH A 42 351 43 HOH HOH . E 4 HOH A 43 352 44 HOH HOH . E 4 HOH A 44 353 45 HOH HOH . E 4 HOH A 45 354 46 HOH HOH . E 4 HOH A 46 355 47 HOH HOH . E 4 HOH A 47 356 48 HOH HOH . E 4 HOH A 48 357 49 HOH HOH . E 4 HOH A 49 358 50 HOH HOH . E 4 HOH A 50 359 51 HOH HOH . E 4 HOH A 51 360 52 HOH HOH . E 4 HOH A 52 361 54 HOH HOH . E 4 HOH A 53 362 55 HOH HOH . E 4 HOH A 54 363 56 HOH HOH . E 4 HOH A 55 364 57 HOH HOH . E 4 HOH A 56 365 58 HOH HOH . E 4 HOH A 57 366 59 HOH HOH . E 4 HOH A 58 367 60 HOH HOH . E 4 HOH A 59 368 61 HOH HOH . E 4 HOH A 60 369 62 HOH HOH . E 4 HOH A 61 370 63 HOH HOH . E 4 HOH A 62 371 64 HOH HOH . E 4 HOH A 63 372 65 HOH HOH . E 4 HOH A 64 373 66 HOH HOH . E 4 HOH A 65 374 67 HOH HOH . E 4 HOH A 66 375 68 HOH HOH . E 4 HOH A 67 376 69 HOH HOH . E 4 HOH A 68 377 70 HOH HOH . E 4 HOH A 69 378 71 HOH HOH . E 4 HOH A 70 379 72 HOH HOH . E 4 HOH A 71 380 73 HOH HOH . E 4 HOH A 72 381 74 HOH HOH . E 4 HOH A 73 382 75 HOH HOH . E 4 HOH A 74 383 76 HOH HOH . E 4 HOH A 75 384 77 HOH HOH . E 4 HOH A 76 385 78 HOH HOH . E 4 HOH A 77 386 79 HOH HOH . E 4 HOH A 78 387 80 HOH HOH . E 4 HOH A 79 388 81 HOH HOH . E 4 HOH A 80 389 82 HOH HOH . E 4 HOH A 81 390 83 HOH HOH . E 4 HOH A 82 391 84 HOH HOH . E 4 HOH A 83 392 85 HOH HOH . E 4 HOH A 84 393 86 HOH HOH . E 4 HOH A 85 394 87 HOH HOH . E 4 HOH A 86 395 88 HOH HOH . E 4 HOH A 87 396 89 HOH HOH . E 4 HOH A 88 397 90 HOH HOH . E 4 HOH A 89 398 91 HOH HOH . E 4 HOH A 90 399 92 HOH HOH . E 4 HOH A 91 400 93 HOH HOH . E 4 HOH A 92 401 94 HOH HOH . E 4 HOH A 93 402 96 HOH HOH . E 4 HOH A 94 403 99 HOH HOH . E 4 HOH A 95 404 100 HOH HOH . E 4 HOH A 96 405 101 HOH HOH . E 4 HOH A 97 406 102 HOH HOH . E 4 HOH A 98 407 103 HOH HOH . E 4 HOH A 99 408 104 HOH HOH . E 4 HOH A 100 409 105 HOH HOH . E 4 HOH A 101 410 106 HOH HOH . E 4 HOH A 102 411 111 HOH HOH . E 4 HOH A 103 412 112 HOH HOH . E 4 HOH A 104 413 113 HOH HOH . E 4 HOH A 105 414 114 HOH HOH . E 4 HOH A 106 415 116 HOH HOH . E 4 HOH A 107 416 117 HOH HOH . E 4 HOH A 108 417 118 HOH HOH . E 4 HOH A 109 418 119 HOH HOH . E 4 HOH A 110 419 120 HOH HOH . E 4 HOH A 111 420 121 HOH HOH . E 4 HOH A 112 421 122 HOH HOH . E 4 HOH A 113 422 125 HOH HOH . E 4 HOH A 114 423 126 HOH HOH . E 4 HOH A 115 424 127 HOH HOH . E 4 HOH A 116 425 128 HOH HOH . E 4 HOH A 117 426 129 HOH HOH . E 4 HOH A 118 427 130 HOH HOH . E 4 HOH A 119 428 131 HOH HOH . E 4 HOH A 120 429 132 HOH HOH . E 4 HOH A 121 430 133 HOH HOH . E 4 HOH A 122 431 134 HOH HOH . E 4 HOH A 123 432 135 HOH HOH . E 4 HOH A 124 433 136 HOH HOH . E 4 HOH A 125 434 137 HOH HOH . E 4 HOH A 126 435 140 HOH HOH . E 4 HOH A 127 436 146 HOH HOH . E 4 HOH A 128 437 148 HOH HOH . E 4 HOH A 129 438 149 HOH HOH . E 4 HOH A 130 439 150 HOH HOH . E 4 HOH A 131 440 151 HOH HOH . E 4 HOH A 132 441 152 HOH HOH . E 4 HOH A 133 442 153 HOH HOH . E 4 HOH A 134 443 154 HOH HOH . E 4 HOH A 135 444 155 HOH HOH . E 4 HOH A 136 445 156 HOH HOH . E 4 HOH A 137 446 157 HOH HOH . E 4 HOH A 138 447 158 HOH HOH . E 4 HOH A 139 448 159 HOH HOH . E 4 HOH A 140 449 160 HOH HOH . E 4 HOH A 141 450 161 HOH HOH . E 4 HOH A 142 451 162 HOH HOH . E 4 HOH A 143 452 163 HOH HOH . E 4 HOH A 144 453 164 HOH HOH . E 4 HOH A 145 454 165 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 -6.833 0.015 25.524 0.5 41.23 ? C1 EDO 309 A 1 HETATM 2 O O1 EDO . . . D 3 -6.987 0.824 26.7 0.5 42.15 ? O1 EDO 309 A 1 HETATM 3 C C2 EDO . . . D 3 -6.797 0.901 24.278 0.5 39.18 ? C2 EDO 309 A 1 HETATM 4 O O2 EDO . . . D 3 -5.591 1.677 24.14 0.5 35.18 ? O2 EDO 309 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #