data_2A5B
#
_model_server_result.job_id            glV-o55x4S-jk2n1bNFAIQ 
_model_server_result.datetime_utc      '2024-11-05 01:19:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2a5b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    2A5B 
#
_exptl.entry_id    2A5B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2A5B 
_cell.length_a            70.019 
_cell.length_b            79.487 
_cell.length_c            42.909 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2A5B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 79.487 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf2 B SG CYS 4 B CYS 4 1_555 B SG CYS 83 B CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
covale ? covale1 A ND2 ASN 17 A ASN 17 1_555 C C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale2 B ND2 ASN 17 B ASN 17 1_555 E C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 272 n n 
C1 O1 NAG sing 273 n n 
C1 O5 NAG sing 274 n n 
C1 H1 NAG sing 275 n n 
C2 C3 NAG sing 276 n n 
C2 N2 NAG sing 277 n n 
C2 H2 NAG sing 278 n n 
C3 C4 NAG sing 279 n n 
C3 O3 NAG sing 280 n n 
C3 H3 NAG sing 281 n n 
C4 C5 NAG sing 282 n n 
C4 O4 NAG sing 283 n n 
C4 H4 NAG sing 284 n n 
C5 C6 NAG sing 285 n n 
C5 O5 NAG sing 286 n n 
C5 H5 NAG sing 287 n n 
C6 O6 NAG sing 288 n n 
C6 H61 NAG sing 289 n n 
C6 H62 NAG sing 290 n n 
C7 C8 NAG sing 291 n n 
C7 N2 NAG sing 292 n n 
C7 O7 NAG doub 293 n n 
C8 H81 NAG sing 294 n n 
C8 H82 NAG sing 295 n n 
C8 H83 NAG sing 296 n n 
N2 HN2 NAG sing 297 n n 
O1 HO1 NAG sing 298 n n 
O3 HO3 NAG sing 299 n n 
O4 HO4 NAG sing 300 n n 
O6 HO6 NAG sing 301 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     2A5B 
_atom_sites.fract_transf_matrix[1][1]    0.014282 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012581 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023305 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 201 201 NAG NAG . 
D 3 8HG A 1 255 255 8HG 8HG . 
E 2 NAG B 1 201 201 NAG NAG . 
F 4 HOH A 1 256 2 HOH HOH . 
F 4 HOH A 2 257 5 HOH HOH . 
F 4 HOH A 3 258 7 HOH HOH . 
F 4 HOH A 4 259 8 HOH HOH . 
F 4 HOH A 5 260 10 HOH HOH . 
F 4 HOH A 6 261 11 HOH HOH . 
F 4 HOH A 7 262 16 HOH HOH . 
F 4 HOH A 8 263 21 HOH HOH . 
F 4 HOH A 9 264 22 HOH HOH . 
F 4 HOH A 10 265 24 HOH HOH . 
F 4 HOH A 11 266 25 HOH HOH . 
F 4 HOH A 12 267 26 HOH HOH . 
F 4 HOH A 13 268 28 HOH HOH . 
F 4 HOH A 14 269 46 HOH HOH . 
F 4 HOH A 15 270 50 HOH HOH . 
F 4 HOH A 16 271 51 HOH HOH . 
F 4 HOH A 17 272 53 HOH HOH . 
F 4 HOH A 18 273 54 HOH HOH . 
F 4 HOH A 19 274 65 HOH HOH . 
G 4 HOH B 1 202 1 HOH HOH . 
G 4 HOH B 2 203 4 HOH HOH . 
G 4 HOH B 3 204 6 HOH HOH . 
G 4 HOH B 4 205 12 HOH HOH . 
G 4 HOH B 5 206 13 HOH HOH . 
G 4 HOH B 6 207 14 HOH HOH . 
G 4 HOH B 7 208 15 HOH HOH . 
G 4 HOH B 8 209 19 HOH HOH . 
G 4 HOH B 9 210 20 HOH HOH . 
G 4 HOH B 10 211 27 HOH HOH . 
G 4 HOH B 11 212 31 HOH HOH . 
G 4 HOH B 12 213 34 HOH HOH . 
G 4 HOH B 13 214 35 HOH HOH . 
G 4 HOH B 14 215 38 HOH HOH . 
G 4 HOH B 15 216 40 HOH HOH . 
G 4 HOH B 16 217 41 HOH HOH . 
G 4 HOH B 17 218 52 HOH HOH . 
G 4 HOH B 18 219 56 HOH HOH . 
G 4 HOH B 19 220 57 HOH HOH . 
G 4 HOH B 20 221 60 HOH HOH . 
G 4 HOH B 21 222 61 HOH HOH . 
G 4 HOH B 22 223 62 HOH HOH . 
G 4 HOH B 23 224 63 HOH HOH . 
G 4 HOH B 24 225 64 HOH HOH . 
G 4 HOH B 25 226 66 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 2 -1.678 14.5 -2.321 1 46.87 ? C1 NAG 201 A 1 
HETATM 2 C C2 NAG . . . C 2 -1.66 14.92 -3.807 1 50.41 ? C2 NAG 201 A 1 
HETATM 3 C C3 NAG . . . C 2 -2.796 14.352 -4.639 1 52.19 ? C3 NAG 201 A 1 
HETATM 4 C C4 NAG . . . C 2 -3.405 13.042 -4.159 1 54.74 ? C4 NAG 201 A 1 
HETATM 5 C C5 NAG . . . C 2 -2.792 12.412 -2.877 1 53.87 ? C5 NAG 201 A 1 
HETATM 6 C C6 NAG . . . C 2 -2.26 11.033 -3.232 1 55.65 ? C6 NAG 201 A 1 
HETATM 7 C C7 NAG . . . C 2 -0.798 16.902 -4.835 1 49.85 ? C7 NAG 201 A 1 
HETATM 8 C C8 NAG . . . C 2 -0.823 18.384 -5.007 1 49.19 ? C8 NAG 201 A 1 
HETATM 9 N N2 NAG . . . C 2 -1.704 16.368 -4.025 1 49.73 ? N2 NAG 201 A 1 
HETATM 10 O O3 NAG . . . C 2 -2.32 14.072 -5.921 1 52.91 ? O3 NAG 201 A 1 
HETATM 11 O O4 NAG . . . C 2 -4.812 13.269 -4.064 1 56.74 ? O4 NAG 201 A 1 
HETATM 12 O O5 NAG . . . C 2 -1.734 13.088 -2.195 1 47.97 ? O5 NAG 201 A 1 
HETATM 13 O O6 NAG . . . C 2 -2.059 10.388 -1.997 1 57.95 ? O6 NAG 201 A 1 
HETATM 14 O O7 NAG . . . C 2 0.056 16.214 -5.43 1 50.93 ? O7 NAG 201 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#