data_2A5G # _model_server_result.job_id -gsfK2F2BfcgxGQZyNNvJA _model_server_result.datetime_utc '2024-11-25 13:34:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a5g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":230}' # _entry.id 2A5G # _exptl.entry_id 2A5G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 107.38 _cell.angle_beta 101.72 _cell.angle_gamma 102.94 _cell.entry_id 2A5G _cell.length_a 38.067 _cell.length_b 44.484 _cell.length_c 56.045 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A5G _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 27 A THR 27 1_555 C MG MG . A MG 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc2 A OG1 THR 44 A THR 44 1_555 C MG MG . A MG 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc3 D O2B GTP . A GTP 230 1_555 C MG MG . A MG 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc4 D O2G GTP . A GTP 230 1_555 C MG MG . A MG 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc5 C MG MG . A MG 231 1_555 F O HOH . A HOH 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc6 B OG1 THR 91 B THR 90 1_555 E NA NA . B NA 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc7 B O THR 91 B THR 90 1_555 E NA NA . B NA 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? metalc ? metalc8 B O TYR 151 B TYR 150 1_555 E NA NA . B NA 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc9 B O LEU 154 B LEU 153 1_555 E NA NA . B NA 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 2A5G _atom_sites.fract_transf_matrix[1][1] 0.026269 _atom_sites.fract_transf_matrix[1][2] 0.006036 _atom_sites.fract_transf_matrix[1][3] 0.00818 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023066 _atom_sites.fract_transf_matrix[2][3] 0.008922 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019539 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 231 231 MG MG . D 4 GTP A 1 230 230 GTP GTP . E 5 NA B 1 242 242 NA NA . F 6 HOH A 1 232 232 HOH HOH . F 6 HOH A 2 233 233 HOH HOH . F 6 HOH A 3 234 234 HOH HOH . F 6 HOH A 4 235 235 HOH HOH . F 6 HOH A 5 236 236 HOH HOH . F 6 HOH A 6 237 237 HOH HOH . F 6 HOH A 7 249 249 HOH HOH . F 6 HOH A 8 250 250 HOH HOH . F 6 HOH A 9 251 251 HOH HOH . F 6 HOH A 10 252 252 HOH HOH . F 6 HOH A 11 253 253 HOH HOH . F 6 HOH A 12 254 254 HOH HOH . F 6 HOH A 13 255 255 HOH HOH . F 6 HOH A 14 257 257 HOH HOH . F 6 HOH A 15 258 258 HOH HOH . F 6 HOH A 16 259 259 HOH HOH . F 6 HOH A 17 260 260 HOH HOH . F 6 HOH A 18 263 263 HOH HOH . F 6 HOH A 19 264 264 HOH HOH . F 6 HOH A 20 265 265 HOH HOH . F 6 HOH A 21 273 273 HOH HOH . F 6 HOH A 22 274 274 HOH HOH . F 6 HOH A 23 278 278 HOH HOH . F 6 HOH A 24 279 279 HOH HOH . F 6 HOH A 25 280 280 HOH HOH . F 6 HOH A 26 281 281 HOH HOH . F 6 HOH A 27 282 282 HOH HOH . F 6 HOH A 28 283 283 HOH HOH . F 6 HOH A 29 284 284 HOH HOH . F 6 HOH A 30 285 285 HOH HOH . F 6 HOH A 31 286 286 HOH HOH . F 6 HOH A 32 288 288 HOH HOH . F 6 HOH A 33 289 289 HOH HOH . F 6 HOH A 34 290 290 HOH HOH . G 6 HOH B 1 238 238 HOH HOH . G 6 HOH B 2 240 240 HOH HOH . G 6 HOH B 3 241 241 HOH HOH . G 6 HOH B 4 243 243 HOH HOH . G 6 HOH B 5 256 256 HOH HOH . G 6 HOH B 6 261 261 HOH HOH . G 6 HOH B 7 262 262 HOH HOH . G 6 HOH B 8 266 266 HOH HOH . G 6 HOH B 9 267 267 HOH HOH . G 6 HOH B 10 268 268 HOH HOH . G 6 HOH B 11 269 269 HOH HOH . G 6 HOH B 12 270 270 HOH HOH . G 6 HOH B 13 271 271 HOH HOH . G 6 HOH B 14 272 272 HOH HOH . G 6 HOH B 15 275 275 HOH HOH . G 6 HOH B 16 276 276 HOH HOH . G 6 HOH B 17 277 277 HOH HOH . G 6 HOH B 18 287 287 HOH HOH . G 6 HOH B 19 291 291 HOH HOH . G 6 HOH B 20 292 292 HOH HOH . G 6 HOH B 21 293 293 HOH HOH . G 6 HOH B 22 294 294 HOH HOH . G 6 HOH B 23 295 295 HOH HOH . G 6 HOH B 24 296 296 HOH HOH . G 6 HOH B 25 297 297 HOH HOH . G 6 HOH B 26 298 298 HOH HOH . G 6 HOH B 27 299 299 HOH HOH . G 6 HOH B 28 300 300 HOH HOH . G 6 HOH B 29 301 301 HOH HOH . G 6 HOH B 30 302 302 HOH HOH . G 6 HOH B 31 303 303 HOH HOH . G 6 HOH B 32 304 304 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . D 4 -2.008 -7.977 3.857 1 27.29 ? PG GTP 230 A 1 HETATM 2 O O1G GTP . . . D 4 -2.066 -8.991 2.737 1 27.28 ? O1G GTP 230 A 1 HETATM 3 O O2G GTP . . . D 4 -2.787 -6.749 3.454 1 27.39 ? O2G GTP 230 A 1 HETATM 4 O O3G GTP . . . D 4 -0.575 -7.593 4.147 1 27.36 ? O3G GTP 230 A 1 HETATM 5 O O3B GTP . . . D 4 -2.66 -8.632 5.174 1 27.04 ? O3B GTP 230 A 1 HETATM 6 P PB GTP . . . D 4 -2.761 -7.803 6.552 1 26.83 ? PB GTP 230 A 1 HETATM 7 O O1B GTP . . . D 4 -1.422 -7.803 7.25 1 26.88 ? O1B GTP 230 A 1 HETATM 8 O O2B GTP . . . D 4 -3.257 -6.396 6.32 1 26.76 ? O2B GTP 230 A 1 HETATM 9 O O3A GTP . . . D 4 -3.805 -8.662 7.429 1 26.8 ? O3A GTP 230 A 1 HETATM 10 P PA GTP . . . D 4 -5.327 -8.178 7.634 1 26.74 ? PA GTP 230 A 1 HETATM 11 O O1A GTP . . . D 4 -5.35 -6.916 8.462 1 26.82 ? O1A GTP 230 A 1 HETATM 12 O O2A GTP . . . D 4 -6.029 -7.98 6.312 1 26.77 ? O2A GTP 230 A 1 HETATM 13 O O5' GTP . . . D 4 -5.983 -9.381 8.471 1 26.93 ? O5' GTP 230 A 1 HETATM 14 C C5' GTP . . . D 4 -5.873 -10.714 8.021 1 27.13 ? C5' GTP 230 A 1 HETATM 15 C C4' GTP . . . D 4 -6.978 -11.546 8.654 1 27.17 ? C4' GTP 230 A 1 HETATM 16 O O4' GTP . . . D 4 -6.606 -11.897 9.974 1 27.36 ? O4' GTP 230 A 1 HETATM 17 C C3' GTP . . . D 4 -8.279 -10.764 8.75 1 27.16 ? C3' GTP 230 A 1 HETATM 18 O O3' GTP . . . D 4 -9.368 -11.601 8.454 1 27.2 ? O3' GTP 230 A 1 HETATM 19 C C2' GTP . . . D 4 -8.34 -10.316 10.19 1 27.27 ? C2' GTP 230 A 1 HETATM 20 O O2' GTP . . . D 4 -9.659 -10.205 10.669 1 27.5 ? O2' GTP 230 A 1 HETATM 21 C C1' GTP . . . D 4 -7.569 -11.418 10.898 1 27.34 ? C1' GTP 230 A 1 HETATM 22 N N9 GTP . . . D 4 -6.943 -10.922 12.136 1 27.25 ? N9 GTP 230 A 1 HETATM 23 C C8 GTP . . . D 4 -6.224 -9.769 12.307 1 27.24 ? C8 GTP 230 A 1 HETATM 24 N N7 GTP . . . D 4 -5.835 -9.699 13.601 1 27.26 ? N7 GTP 230 A 1 HETATM 25 C C5 GTP . . . D 4 -6.297 -10.788 14.252 1 27.32 ? C5 GTP 230 A 1 HETATM 26 C C6 GTP . . . D 4 -6.193 -11.216 15.568 1 27.32 ? C6 GTP 230 A 1 HETATM 27 O O6 GTP . . . D 4 -5.581 -10.542 16.395 1 27.34 ? O6 GTP 230 A 1 HETATM 28 N N1 GTP . . . D 4 -6.785 -12.398 15.955 1 27.31 ? N1 GTP 230 A 1 HETATM 29 C C2 GTP . . . D 4 -7.47 -13.154 15.025 1 27.2 ? C2 GTP 230 A 1 HETATM 30 N N2 GTP . . . D 4 -8.043 -14.298 15.383 1 27.26 ? N2 GTP 230 A 1 HETATM 31 N N3 GTP . . . D 4 -7.575 -12.725 13.722 1 27.26 ? N3 GTP 230 A 1 HETATM 32 C C4 GTP . . . D 4 -6.996 -11.563 13.341 1 27.27 ? C4 GTP 230 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #