data_2A5I # _model_server_result.job_id ue6QIiWZweagYBzdGRQb2w _model_server_result.datetime_utc '2025-01-11 10:38:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a5i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":308}' # _entry.id 2A5I # _exptl.entry_id 2A5I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.65 _cell.angle_gamma 90 _cell.entry_id 2A5I _cell.length_a 106.703 _cell.length_b 83.677 _cell.length_c 52.862 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A5I _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PQS monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1,2 A,B,C,D,E 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -14.260066 0 50.902275 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 145 A CYS 145 1_555 B CBM AZP . A AZP 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? covale ? covale2 C O1 EDO . A EDO 308 2_556 D O3 GOL . A GOL 309 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.707 ? covale ? covale3 C O1 EDO . A EDO 308 1_555 D O3 GOL . A GOL 309 2_556 ? A ? ? ? ? ? ? ? ? ? ? 1.707 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 173 n n C1 C2 EDO sing 174 n n C1 H11 EDO sing 175 n n C1 H12 EDO sing 176 n n O1 HO1 EDO sing 177 n n C2 O2 EDO sing 178 n n C2 H21 EDO sing 179 n n C2 H22 EDO sing 180 n n O2 HO2 EDO sing 181 n n # _atom_sites.entry_id 2A5I _atom_sites.fract_transf_matrix[1][1] 0.009372 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002625 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011951 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019645 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AZP A 1 307 307 AZP AZP . C 3 EDO A 1 308 303 EDO EGL . D 4 GOL A 1 309 302 GOL CRY . E 5 HOH A 1 310 2 HOH HOH . E 5 HOH A 2 311 3 HOH HOH . E 5 HOH A 3 312 4 HOH HOH . E 5 HOH A 4 313 5 HOH HOH . E 5 HOH A 5 314 6 HOH HOH . E 5 HOH A 6 315 7 HOH HOH . E 5 HOH A 7 316 8 HOH HOH . E 5 HOH A 8 317 9 HOH HOH . E 5 HOH A 9 318 10 HOH HOH . E 5 HOH A 10 319 11 HOH HOH . E 5 HOH A 11 320 12 HOH HOH . E 5 HOH A 12 321 13 HOH HOH . E 5 HOH A 13 322 14 HOH HOH . E 5 HOH A 14 323 15 HOH HOH . E 5 HOH A 15 324 16 HOH HOH . E 5 HOH A 16 325 17 HOH HOH . E 5 HOH A 17 326 18 HOH HOH . E 5 HOH A 18 327 20 HOH HOH . E 5 HOH A 19 328 21 HOH HOH . E 5 HOH A 20 329 22 HOH HOH . E 5 HOH A 21 330 23 HOH HOH . E 5 HOH A 22 331 24 HOH HOH . E 5 HOH A 23 332 25 HOH HOH . E 5 HOH A 24 333 26 HOH HOH . E 5 HOH A 25 334 27 HOH HOH . E 5 HOH A 26 335 28 HOH HOH . E 5 HOH A 27 336 29 HOH HOH . E 5 HOH A 28 337 30 HOH HOH . E 5 HOH A 29 338 31 HOH HOH . E 5 HOH A 30 339 32 HOH HOH . E 5 HOH A 31 340 33 HOH HOH . E 5 HOH A 32 341 34 HOH HOH . E 5 HOH A 33 342 35 HOH HOH . E 5 HOH A 34 343 36 HOH HOH . E 5 HOH A 35 344 37 HOH HOH . E 5 HOH A 36 345 38 HOH HOH . E 5 HOH A 37 346 39 HOH HOH . E 5 HOH A 38 347 40 HOH HOH . E 5 HOH A 39 348 41 HOH HOH . E 5 HOH A 40 349 42 HOH HOH . E 5 HOH A 41 350 43 HOH HOH . E 5 HOH A 42 351 44 HOH HOH . E 5 HOH A 43 352 45 HOH HOH . E 5 HOH A 44 353 46 HOH HOH . E 5 HOH A 45 354 47 HOH HOH . E 5 HOH A 46 355 48 HOH HOH . E 5 HOH A 47 356 49 HOH HOH . E 5 HOH A 48 357 50 HOH HOH . E 5 HOH A 49 358 51 HOH HOH . E 5 HOH A 50 359 52 HOH HOH . E 5 HOH A 51 360 53 HOH HOH . E 5 HOH A 52 361 54 HOH HOH . E 5 HOH A 53 362 55 HOH HOH . E 5 HOH A 54 363 56 HOH HOH . E 5 HOH A 55 364 57 HOH HOH . E 5 HOH A 56 365 58 HOH HOH . E 5 HOH A 57 366 59 HOH HOH . E 5 HOH A 58 367 60 HOH HOH . E 5 HOH A 59 368 61 HOH HOH . E 5 HOH A 60 369 62 HOH HOH . E 5 HOH A 61 370 63 HOH HOH . E 5 HOH A 62 371 64 HOH HOH . E 5 HOH A 63 372 65 HOH HOH . E 5 HOH A 64 373 66 HOH HOH . E 5 HOH A 65 374 67 HOH HOH . E 5 HOH A 66 375 68 HOH HOH . E 5 HOH A 67 376 69 HOH HOH . E 5 HOH A 68 377 70 HOH HOH . E 5 HOH A 69 378 71 HOH HOH . E 5 HOH A 70 379 72 HOH HOH . E 5 HOH A 71 380 73 HOH HOH . E 5 HOH A 72 381 74 HOH HOH . E 5 HOH A 73 382 75 HOH HOH . E 5 HOH A 74 383 76 HOH HOH . E 5 HOH A 75 384 77 HOH HOH . E 5 HOH A 76 385 78 HOH HOH . E 5 HOH A 77 386 79 HOH HOH . E 5 HOH A 78 387 80 HOH HOH . E 5 HOH A 79 388 81 HOH HOH . E 5 HOH A 80 389 82 HOH HOH . E 5 HOH A 81 390 83 HOH HOH . E 5 HOH A 82 391 84 HOH HOH . E 5 HOH A 83 392 85 HOH HOH . E 5 HOH A 84 393 86 HOH HOH . E 5 HOH A 85 394 87 HOH HOH . E 5 HOH A 86 395 88 HOH HOH . E 5 HOH A 87 396 89 HOH HOH . E 5 HOH A 88 397 90 HOH HOH . E 5 HOH A 89 398 91 HOH HOH . E 5 HOH A 90 399 92 HOH HOH . E 5 HOH A 91 400 93 HOH HOH . E 5 HOH A 92 401 95 HOH HOH . E 5 HOH A 93 402 96 HOH HOH . E 5 HOH A 94 403 97 HOH HOH . E 5 HOH A 95 404 98 HOH HOH . E 5 HOH A 96 405 99 HOH HOH . E 5 HOH A 97 406 100 HOH HOH . E 5 HOH A 98 407 101 HOH HOH . E 5 HOH A 99 408 102 HOH HOH . E 5 HOH A 100 409 103 HOH HOH . E 5 HOH A 101 410 104 HOH HOH . E 5 HOH A 102 411 105 HOH HOH . E 5 HOH A 103 412 106 HOH HOH . E 5 HOH A 104 413 107 HOH HOH . E 5 HOH A 105 414 108 HOH HOH . E 5 HOH A 106 415 109 HOH HOH . E 5 HOH A 107 416 110 HOH HOH . E 5 HOH A 108 417 111 HOH HOH . E 5 HOH A 109 418 112 HOH HOH . E 5 HOH A 110 419 113 HOH HOH . E 5 HOH A 111 420 114 HOH HOH . E 5 HOH A 112 421 115 HOH HOH . E 5 HOH A 113 422 116 HOH HOH . E 5 HOH A 114 423 117 HOH HOH . E 5 HOH A 115 424 118 HOH HOH . E 5 HOH A 116 425 119 HOH HOH . E 5 HOH A 117 426 120 HOH HOH . E 5 HOH A 118 427 121 HOH HOH . E 5 HOH A 119 428 122 HOH HOH . E 5 HOH A 120 429 123 HOH HOH . E 5 HOH A 121 430 124 HOH HOH . E 5 HOH A 122 431 125 HOH HOH . E 5 HOH A 123 432 126 HOH HOH . E 5 HOH A 124 433 127 HOH HOH . E 5 HOH A 125 434 128 HOH HOH . E 5 HOH A 126 435 129 HOH HOH . E 5 HOH A 127 436 130 HOH HOH . E 5 HOH A 128 437 131 HOH HOH . E 5 HOH A 129 438 132 HOH HOH . E 5 HOH A 130 439 134 HOH HOH . E 5 HOH A 131 440 135 HOH HOH . E 5 HOH A 132 441 136 HOH HOH . E 5 HOH A 133 442 137 HOH HOH . E 5 HOH A 134 443 138 HOH HOH . E 5 HOH A 135 444 139 HOH HOH . E 5 HOH A 136 445 140 HOH HOH . E 5 HOH A 137 446 141 HOH HOH . E 5 HOH A 138 447 142 HOH HOH . E 5 HOH A 139 448 143 HOH HOH . E 5 HOH A 140 449 145 HOH HOH . E 5 HOH A 141 450 146 HOH HOH . E 5 HOH A 142 451 147 HOH HOH . E 5 HOH A 143 452 148 HOH HOH . E 5 HOH A 144 453 149 HOH HOH . E 5 HOH A 145 454 150 HOH HOH . E 5 HOH A 146 455 151 HOH HOH . E 5 HOH A 147 456 152 HOH HOH . E 5 HOH A 148 457 153 HOH HOH . E 5 HOH A 149 458 154 HOH HOH . E 5 HOH A 150 459 155 HOH HOH . E 5 HOH A 151 460 156 HOH HOH . E 5 HOH A 152 461 157 HOH HOH . E 5 HOH A 153 462 158 HOH HOH . E 5 HOH A 154 463 159 HOH HOH . E 5 HOH A 155 464 160 HOH HOH . E 5 HOH A 156 465 161 HOH HOH . E 5 HOH A 157 466 162 HOH HOH . E 5 HOH A 158 467 163 HOH HOH . E 5 HOH A 159 468 164 HOH HOH . E 5 HOH A 160 469 165 HOH HOH . E 5 HOH A 161 470 166 HOH HOH . E 5 HOH A 162 471 167 HOH HOH . E 5 HOH A 163 472 168 HOH HOH . E 5 HOH A 164 473 170 HOH HOH . E 5 HOH A 165 474 171 HOH HOH . E 5 HOH A 166 475 172 HOH HOH . E 5 HOH A 167 476 173 HOH HOH . E 5 HOH A 168 477 174 HOH HOH . E 5 HOH A 169 478 175 HOH HOH . E 5 HOH A 170 479 176 HOH HOH . E 5 HOH A 171 480 177 HOH HOH . E 5 HOH A 172 481 178 HOH HOH . E 5 HOH A 173 482 179 HOH HOH . E 5 HOH A 174 483 180 HOH HOH . E 5 HOH A 175 484 182 HOH HOH . E 5 HOH A 176 485 183 HOH HOH . E 5 HOH A 177 486 184 HOH HOH . E 5 HOH A 178 487 185 HOH HOH . E 5 HOH A 179 488 186 HOH HOH . E 5 HOH A 180 489 187 HOH HOH . E 5 HOH A 181 490 188 HOH HOH . E 5 HOH A 182 491 189 HOH HOH . E 5 HOH A 183 492 190 HOH HOH . E 5 HOH A 184 493 191 HOH HOH . E 5 HOH A 185 494 192 HOH HOH . E 5 HOH A 186 495 193 HOH HOH . E 5 HOH A 187 496 194 HOH HOH . E 5 HOH A 188 497 195 HOH HOH . E 5 HOH A 189 498 196 HOH HOH . E 5 HOH A 190 499 197 HOH HOH . E 5 HOH A 191 500 199 HOH HOH . E 5 HOH A 192 501 200 HOH HOH . E 5 HOH A 193 502 201 HOH HOH . E 5 HOH A 194 503 202 HOH HOH . E 5 HOH A 195 504 203 HOH HOH . E 5 HOH A 196 505 204 HOH HOH . E 5 HOH A 197 506 206 HOH HOH . E 5 HOH A 198 507 207 HOH HOH . E 5 HOH A 199 508 208 HOH HOH . E 5 HOH A 200 509 209 HOH HOH . E 5 HOH A 201 510 211 HOH HOH . E 5 HOH A 202 511 213 HOH HOH . E 5 HOH A 203 512 214 HOH HOH . E 5 HOH A 204 513 216 HOH HOH . E 5 HOH A 205 514 218 HOH HOH . E 5 HOH A 206 515 219 HOH HOH . E 5 HOH A 207 516 220 HOH HOH . E 5 HOH A 208 517 222 HOH HOH . E 5 HOH A 209 518 223 HOH HOH . E 5 HOH A 210 519 225 HOH HOH . E 5 HOH A 211 520 227 HOH HOH . E 5 HOH A 212 521 228 HOH HOH . E 5 HOH A 213 522 229 HOH HOH . E 5 HOH A 214 523 230 HOH HOH . E 5 HOH A 215 524 231 HOH HOH . E 5 HOH A 216 525 232 HOH HOH . E 5 HOH A 217 526 233 HOH HOH . E 5 HOH A 218 527 234 HOH HOH . E 5 HOH A 219 528 235 HOH HOH . E 5 HOH A 220 529 236 HOH HOH . E 5 HOH A 221 530 237 HOH HOH . E 5 HOH A 222 531 238 HOH HOH . E 5 HOH A 223 532 240 HOH HOH . E 5 HOH A 224 533 241 HOH HOH . E 5 HOH A 225 534 243 HOH HOH . E 5 HOH A 226 535 245 HOH HOH . E 5 HOH A 227 536 246 HOH HOH . E 5 HOH A 228 537 247 HOH HOH . E 5 HOH A 229 538 248 HOH HOH . E 5 HOH A 230 539 249 HOH HOH . E 5 HOH A 231 540 250 HOH HOH . E 5 HOH A 232 541 251 HOH HOH . E 5 HOH A 233 542 252 HOH HOH . E 5 HOH A 234 543 253 HOH HOH . E 5 HOH A 235 544 254 HOH HOH . E 5 HOH A 236 545 255 HOH HOH . E 5 HOH A 237 546 264 HOH HOH . E 5 HOH A 238 547 266 HOH HOH . E 5 HOH A 239 548 267 HOH HOH . E 5 HOH A 240 549 268 HOH HOH . E 5 HOH A 241 550 269 HOH HOH . E 5 HOH A 242 551 270 HOH HOH . E 5 HOH A 243 552 271 HOH HOH . E 5 HOH A 244 553 272 HOH HOH . E 5 HOH A 245 554 273 HOH HOH . E 5 HOH A 246 555 274 HOH HOH . E 5 HOH A 247 556 275 HOH HOH . E 5 HOH A 248 557 276 HOH HOH . E 5 HOH A 249 558 277 HOH HOH . E 5 HOH A 250 559 278 HOH HOH . E 5 HOH A 251 560 279 HOH HOH . E 5 HOH A 252 561 280 HOH HOH . E 5 HOH A 253 562 281 HOH HOH . E 5 HOH A 254 563 282 HOH HOH . E 5 HOH A 255 564 283 HOH HOH . E 5 HOH A 256 565 284 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . A . C 3 -10.19 4.764 26.264 0.5 35.32 ? C1 EDO 308 A 1 HETATM 2 C C1 EDO . B . C 3 -8.842 4.636 26.873 0.5 38.9 ? C1 EDO 308 A 1 HETATM 3 O O1 EDO . A . C 3 -9.016 4.045 25.82 0.5 34.98 ? O1 EDO 308 A 1 HETATM 4 O O1 EDO . B . C 3 -9.772 4.39 27.921 0.5 34.41 ? O1 EDO 308 A 1 HETATM 5 C C2 EDO . A . C 3 -10.064 6.266 25.99 0.5 32.93 ? C2 EDO 308 A 1 HETATM 6 C C2 EDO . B . C 3 -9.006 6.047 26.291 0.5 39.87 ? C2 EDO 308 A 1 HETATM 7 O O2 EDO . A . C 3 -10.56 6.581 24.701 0.5 29.27 ? O2 EDO 308 A 1 HETATM 8 O O2 EDO . B . C 3 -7.76 6.379 25.687 0.5 41.29 ? O2 EDO 308 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 8 #