data_2A5U
#
_model_server_result.job_id            9nf3_qm4stk52m8Sc8fVbw 
_model_server_result.datetime_utc      '2024-12-21 18:38:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2a5u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":101}' 
#
_entry.id    2A5U 
#
_exptl.entry_id    2A5U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              257.268 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (5E)-5-(QUINOXALIN-6-YLMETHYLENE)-1,3-THIAZOLIDINE-2,4-DIONE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.35 
_cell.angle_gamma         90 
_cell.entry_id            2A5U 
_cell.length_a            140.446 
_cell.length_b            67.406 
_cell.length_c            105.971 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2A5U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C12 H7 N3 O2 S' 
_chem_comp.formula_weight    257.268 
_chem_comp.id                QYT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (5E)-5-(QUINOXALIN-6-YLMETHYLENE)-1,3-THIAZOLIDINE-2,4-DIONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     5-QUINOXALIN-6-YLMETHYLENE-THIAZOLIDINE-2,4-DIONE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 QYT doub 277 n y 
C1 C14 QYT sing 278 n y 
C1 H1 QYT sing 279 n n 
C2 C3 QYT sing 280 n y 
C2 H2 QYT sing 281 n n 
C3 C4 QYT doub 282 n y 
C3 C5 QYT sing 283 n n 
C7 C6 QYT sing 284 n n 
C7 N9 QYT sing 285 n n 
C7 O10 QYT doub 286 n n 
C11 S8 QYT sing 287 n n 
C11 N9 QYT sing 288 n n 
C11 O12 QYT doub 289 n n 
C13 C14 QYT doub 290 n y 
C13 N18 QYT sing 291 n y 
C13 C4 QYT sing 292 n y 
C14 N15 QYT sing 293 n y 
C16 N15 QYT doub 294 n y 
C16 C17 QYT sing 295 n y 
C16 H16 QYT sing 296 n n 
N18 C17 QYT doub 297 n y 
C4 H4 QYT sing 298 n n 
C5 C6 QYT doub 299 z n 
C5 H5 QYT sing 300 n n 
C6 S8 QYT sing 301 n n 
N9 HN9 QYT sing 302 n n 
C17 H17 QYT sing 303 n n 
#
_atom_sites.entry_id                     2A5U 
_atom_sites.fract_transf_matrix[1][1]    0.00712 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00079 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01484 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0095 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 QYT A 1 101 101 QYT QYT . 
C 3 HOH A 1 1 1 HOH HOH . 
C 3 HOH A 2 2 2 HOH HOH . 
C 3 HOH A 3 3 3 HOH HOH . 
C 3 HOH A 4 4 4 HOH HOH . 
C 3 HOH A 5 5 5 HOH HOH . 
C 3 HOH A 6 6 6 HOH HOH . 
C 3 HOH A 7 7 7 HOH HOH . 
C 3 HOH A 8 8 8 HOH HOH . 
C 3 HOH A 9 9 9 HOH HOH . 
C 3 HOH A 10 10 10 HOH HOH . 
C 3 HOH A 11 11 11 HOH HOH . 
C 3 HOH A 12 12 12 HOH HOH . 
C 3 HOH A 13 13 13 HOH HOH . 
C 3 HOH A 14 14 14 HOH HOH . 
C 3 HOH A 15 15 15 HOH HOH . 
C 3 HOH A 16 16 16 HOH HOH . 
C 3 HOH A 17 17 17 HOH HOH . 
C 3 HOH A 18 18 18 HOH HOH . 
C 3 HOH A 19 19 19 HOH HOH . 
C 3 HOH A 20 20 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 QYT . . . B 2 43.677 12.642 29.722 1 37.15 ? C1 QYT 101 A 1 
HETATM 2 C C2 QYT . . . B 2 42.736 13.297 30.661 1 32.75 ? C2 QYT 101 A 1 
HETATM 3 C C3 QYT . . . B 2 43.145 14.346 31.472 1 44.11 ? C3 QYT 101 A 1 
HETATM 4 C C7 QYT . . . B 2 40.238 15.263 33.9 1 51.99 ? C7 QYT 101 A 1 
HETATM 5 C C11 QYT . . . B 2 38.488 14.147 32.776 1 64.16 ? C11 QYT 101 A 1 
HETATM 6 C C13 QYT . . . B 2 45.417 14.209 30.513 1 28.9 ? C13 QYT 101 A 1 
HETATM 7 C C14 QYT . . . B 2 44.961 13.078 29.665 1 33.22 ? C14 QYT 101 A 1 
HETATM 8 C C16 QYT . . . B 2 47.13 12.887 28.766 1 36.62 ? C16 QYT 101 A 1 
HETATM 9 N N18 QYT . . . B 2 46.762 14.619 30.419 1 33.29 ? N18 QYT 101 A 1 
HETATM 10 C C4 QYT . . . B 2 44.562 14.814 31.368 1 38.78 ? C4 QYT 101 A 1 
HETATM 11 C C5 QYT . . . B 2 42.243 15.04 32.481 1 29.03 ? C5 QYT 101 A 1 
HETATM 12 C C6 QYT . . . B 2 40.935 14.799 32.717 1 49.45 ? C6 QYT 101 A 1 
HETATM 13 S S8 QYT . . . B 2 39.803 13.908 31.691 1 70.87 ? S8 QYT 101 A 1 
HETATM 14 N N9 QYT . . . B 2 38.861 14.891 33.923 1 63.59 ? N9 QYT 101 A 1 
HETATM 15 O O10 QYT . . . B 2 40.772 15.916 34.802 1 66.28 ? O10 QYT 101 A 1 
HETATM 16 O O12 QYT . . . B 2 37.343 13.713 32.567 1 71.81 ? O12 QYT 101 A 1 
HETATM 17 N N15 QYT . . . B 2 45.898 12.473 28.812 1 41.49 ? N15 QYT 101 A 1 
HETATM 18 C C17 QYT . . . B 2 47.587 14.028 29.618 1 37.44 ? C17 QYT 101 A 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           468 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           18 
#