data_2A5X # _model_server_result.job_id zqj9FsuDmODzOSyEiBt_kA _model_server_result.datetime_utc '2024-11-15 20:49:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":378}' # _entry.id 2A5X # _exptl.entry_id 2A5X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.62 _cell.angle_gamma 90 _cell.entry_id 2A5X _cell.length_a 207.377 _cell.length_b 54.372 _cell.length_c 36.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -5.425673 0 35.791089 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 263 A GLN 263 1_555 C CA CA . A CA 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc2 A OG SER 265 A SER 265 1_555 C CA CA . A CA 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc3 B CA CA . A CA 376 1_555 D O2G ANP . A ANP 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc4 B CA CA . A CA 376 1_555 D O1B ANP . A ANP 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc5 B CA CA . A CA 376 1_555 I O HOH . A HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc6 C CA CA . A CA 377 1_555 I O HOH . A HOH 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc7 C CA CA . A CA 377 1_555 I O HOH . A HOH 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc8 C CA CA . A CA 377 1_555 I O HOH . A HOH 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 2A5X _atom_sites.fract_transf_matrix[1][1] 0.004822 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000731 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018392 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02794 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 376 1 CA CA . C 2 CA A 1 377 7 CA CA . D 3 ANP A 1 378 2 ANP ANP . E 4 LAR A 1 379 3 LAR LAR . F 5 NSB A 1 380 6 NSB NSB . G 6 MPD A 1 381 4 MPD MPD . H 6 MPD A 1 382 5 MPD MPD . I 7 HOH A 1 383 8 HOH HOH . I 7 HOH A 2 384 9 HOH HOH . I 7 HOH A 3 385 10 HOH HOH . I 7 HOH A 4 386 11 HOH HOH . I 7 HOH A 5 387 12 HOH HOH . I 7 HOH A 6 388 13 HOH HOH . I 7 HOH A 7 389 14 HOH HOH . I 7 HOH A 8 390 15 HOH HOH . I 7 HOH A 9 391 16 HOH HOH . I 7 HOH A 10 392 17 HOH HOH . I 7 HOH A 11 393 18 HOH HOH . I 7 HOH A 12 394 19 HOH HOH . I 7 HOH A 13 395 20 HOH HOH . I 7 HOH A 14 396 22 HOH HOH . I 7 HOH A 15 397 23 HOH HOH . I 7 HOH A 16 398 24 HOH HOH . I 7 HOH A 17 399 25 HOH HOH . I 7 HOH A 18 400 26 HOH HOH . I 7 HOH A 19 401 27 HOH HOH . I 7 HOH A 20 402 28 HOH HOH . I 7 HOH A 21 403 29 HOH HOH . I 7 HOH A 22 404 30 HOH HOH . I 7 HOH A 23 405 31 HOH HOH . I 7 HOH A 24 406 32 HOH HOH . I 7 HOH A 25 407 33 HOH HOH . I 7 HOH A 26 408 34 HOH HOH . I 7 HOH A 27 409 35 HOH HOH . I 7 HOH A 28 410 36 HOH HOH . I 7 HOH A 29 411 37 HOH HOH . I 7 HOH A 30 412 38 HOH HOH . I 7 HOH A 31 413 39 HOH HOH . I 7 HOH A 32 414 40 HOH HOH . I 7 HOH A 33 415 41 HOH HOH . I 7 HOH A 34 416 42 HOH HOH . I 7 HOH A 35 417 43 HOH HOH . I 7 HOH A 36 418 44 HOH HOH . I 7 HOH A 37 419 45 HOH HOH . I 7 HOH A 38 420 46 HOH HOH . I 7 HOH A 39 421 47 HOH HOH . I 7 HOH A 40 422 48 HOH HOH . I 7 HOH A 41 423 49 HOH HOH . I 7 HOH A 42 424 50 HOH HOH . I 7 HOH A 43 425 51 HOH HOH . I 7 HOH A 44 426 52 HOH HOH . I 7 HOH A 45 427 53 HOH HOH . I 7 HOH A 46 428 54 HOH HOH . I 7 HOH A 47 429 55 HOH HOH . I 7 HOH A 48 430 56 HOH HOH . I 7 HOH A 49 431 57 HOH HOH . I 7 HOH A 50 432 58 HOH HOH . I 7 HOH A 51 433 59 HOH HOH . I 7 HOH A 52 434 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . D 3 25.053 68.147 22.876 1 25.51 ? PG ANP 378 A 1 HETATM 2 O O1G ANP . . . D 3 26.306 68.591 22.17 1 23.86 ? O1G ANP 378 A 1 HETATM 3 O O2G ANP . . . D 3 25.196 66.937 23.765 1 25.75 ? O2G ANP 378 A 1 HETATM 4 O O3G ANP . . . D 3 23.778 68.12 22.043 1 25.98 ? O3G ANP 378 A 1 HETATM 5 P PB ANP . . . D 3 25.296 69.452 25.533 1 21.91 ? PB ANP 378 A 1 HETATM 6 O O1B ANP . . . D 3 26.21 68.303 25.856 1 21.14 ? O1B ANP 378 A 1 HETATM 7 O O2B ANP . . . D 3 25.856 70.856 25.738 1 20.14 ? O2B ANP 378 A 1 HETATM 8 N N3B ANP . . . D 3 24.835 69.5 23.883 1 23.38 ? N3B ANP 378 A 1 HETATM 9 P PA ANP . . . D 3 23.481 68.956 27.745 1 20.62 ? PA ANP 378 A 1 HETATM 10 O O1A ANP . . . D 3 23.096 67.503 27.91 1 20.37 ? O1A ANP 378 A 1 HETATM 11 O O2A ANP . . . D 3 24.627 69.563 28.517 1 17.96 ? O2A ANP 378 A 1 HETATM 12 O O3A ANP . . . D 3 23.836 69.216 26.179 1 22.15 ? O3A ANP 378 A 1 HETATM 13 O O5' ANP . . . D 3 22.135 69.81 27.907 1 20.54 ? O5' ANP 378 A 1 HETATM 14 C C5' ANP . . . D 3 22.01 71.112 27.338 1 21.53 ? C5' ANP 378 A 1 HETATM 15 C C4' ANP . . . D 3 20.547 71.312 26.958 1 23.3 ? C4' ANP 378 A 1 HETATM 16 O O4' ANP . . . D 3 19.704 70.722 27.942 1 23.88 ? O4' ANP 378 A 1 HETATM 17 C C3' ANP . . . D 3 20.129 72.77 26.861 1 23.5 ? C3' ANP 378 A 1 HETATM 18 O O3' ANP . . . D 3 19.493 72.967 25.587 1 24.24 ? O3' ANP 378 A 1 HETATM 19 C C2' ANP . . . D 3 19.136 72.927 27.981 1 22.26 ? C2' ANP 378 A 1 HETATM 20 O O2' ANP . . . D 3 18.121 73.899 27.719 1 25.14 ? O2' ANP 378 A 1 HETATM 21 C C1' ANP . . . D 3 18.561 71.538 28.11 1 22.19 ? C1' ANP 378 A 1 HETATM 22 N N9 ANP . . . D 3 17.959 71.375 29.455 1 22.17 ? N9 ANP 378 A 1 HETATM 23 C C8 ANP . . . D 3 18.568 71.551 30.64 1 22.02 ? C8 ANP 378 A 1 HETATM 24 N N7 ANP . . . D 3 17.711 71.36 31.675 1 23.2 ? N7 ANP 378 A 1 HETATM 25 C C5 ANP . . . D 3 16.511 71.051 31.137 1 23.23 ? C5 ANP 378 A 1 HETATM 26 C C6 ANP . . . D 3 15.16 70.729 31.64 1 22.15 ? C6 ANP 378 A 1 HETATM 27 N N6 ANP . . . D 3 14.902 70.687 32.961 1 21.78 ? N6 ANP 378 A 1 HETATM 28 N N1 ANP . . . D 3 14.193 70.476 30.734 1 22.89 ? N1 ANP 378 A 1 HETATM 29 C C2 ANP . . . D 3 14.414 70.512 29.405 1 21.83 ? C2 ANP 378 A 1 HETATM 30 N N3 ANP . . . D 3 15.611 70.795 28.88 1 21.1 ? N3 ANP 378 A 1 HETATM 31 C C4 ANP . . . D 3 16.678 71.067 29.675 1 22.64 ? C4 ANP 378 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #