data_2A5X # _model_server_result.job_id 7cFh38tSb4hXU9n0E_yq0Q _model_server_result.datetime_utc '2024-11-15 20:28:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":379}' # _entry.id 2A5X # _exptl.entry_id 2A5X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 421.55 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LATRUNCULIN A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.62 _cell.angle_gamma 90 _cell.entry_id 2A5X _cell.length_a 207.377 _cell.length_b 54.372 _cell.length_c 36.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -5.425673 0 35.791089 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 263 A GLN 263 1_555 C CA CA . A CA 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc2 A OG SER 265 A SER 265 1_555 C CA CA . A CA 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc3 B CA CA . A CA 376 1_555 D O2G ANP . A ANP 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc4 B CA CA . A CA 376 1_555 D O1B ANP . A ANP 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc5 B CA CA . A CA 376 1_555 I O HOH . A HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc6 C CA CA . A CA 377 1_555 I O HOH . A HOH 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc7 C CA CA . A CA 377 1_555 I O HOH . A HOH 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc8 C CA CA . A CA 377 1_555 I O HOH . A HOH 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? # _chem_comp.formula 'C22 H31 N O5 S' _chem_comp.formula_weight 421.55 _chem_comp.id LAR _chem_comp.mon_nstd_flag . _chem_comp.name 'LATRUNCULIN A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-(17-HYDROXY-5,12-DIMETHYL-3-OXO-2,16-DIOXABICYCLO[13.3.1]NONADECA-4,8,10-TRIEN-17-YL)-2-THIAZOLIDINONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C19 LAR sing 223 n n S1 C20 LAR sing 224 n n N1 C18 LAR sing 225 n n N1 C20 LAR sing 226 n n N1 HN1 LAR sing 227 n n O1 C1 LAR doub 228 n n O2 C1 LAR sing 229 n n O2 C15 LAR sing 230 n n O3 C13 LAR sing 231 n n O3 C17 LAR sing 232 n n O4 C17 LAR sing 233 n n O4 HO4 LAR sing 234 n n O5 C20 LAR doub 235 n n C1 C2 LAR sing 236 n n C2 C3 LAR doub 237 z n C2 H21 LAR sing 238 n n C3 C4 LAR sing 239 n n C3 C21 LAR sing 240 n n C4 C5 LAR sing 241 n n C4 H41 LAR sing 242 n n C4 H42 LAR sing 243 n n C5 C6 LAR sing 244 n n C5 H51 LAR sing 245 n n C5 H52 LAR sing 246 n n C6 C7 LAR doub 247 e n C6 H61 LAR sing 248 n n C7 C8 LAR sing 249 n n C7 H71 LAR sing 250 n n C8 C9 LAR doub 251 z n C8 H81 LAR sing 252 n n C9 C10 LAR sing 253 n n C9 H91 LAR sing 254 n n C10 C11 LAR sing 255 n n C10 C22 LAR sing 256 n n C10 H101 LAR sing 257 n n C11 C12 LAR sing 258 n n C11 H111 LAR sing 259 n n C11 H112 LAR sing 260 n n C12 C13 LAR sing 261 n n C12 H121 LAR sing 262 n n C12 H122 LAR sing 263 n n C13 C14 LAR sing 264 n n C13 H131 LAR sing 265 n n C14 C15 LAR sing 266 n n C14 H141 LAR sing 267 n n C14 H142 LAR sing 268 n n C15 C16 LAR sing 269 n n C15 H151 LAR sing 270 n n C16 C17 LAR sing 271 n n C16 H161 LAR sing 272 n n C16 H162 LAR sing 273 n n C17 C18 LAR sing 274 n n C18 C19 LAR sing 275 n n C18 H181 LAR sing 276 n n C19 H191 LAR sing 277 n n C19 H192 LAR sing 278 n n C21 H211 LAR sing 279 n n C21 H212 LAR sing 280 n n C21 H213 LAR sing 281 n n C22 H221 LAR sing 282 n n C22 H222 LAR sing 283 n n C22 H223 LAR sing 284 n n # _atom_sites.entry_id 2A5X _atom_sites.fract_transf_matrix[1][1] 0.004822 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000731 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018392 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02794 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 376 1 CA CA . C 2 CA A 1 377 7 CA CA . D 3 ANP A 1 378 2 ANP ANP . E 4 LAR A 1 379 3 LAR LAR . F 5 NSB A 1 380 6 NSB NSB . G 6 MPD A 1 381 4 MPD MPD . H 6 MPD A 1 382 5 MPD MPD . I 7 HOH A 1 383 8 HOH HOH . I 7 HOH A 2 384 9 HOH HOH . I 7 HOH A 3 385 10 HOH HOH . I 7 HOH A 4 386 11 HOH HOH . I 7 HOH A 5 387 12 HOH HOH . I 7 HOH A 6 388 13 HOH HOH . I 7 HOH A 7 389 14 HOH HOH . I 7 HOH A 8 390 15 HOH HOH . I 7 HOH A 9 391 16 HOH HOH . I 7 HOH A 10 392 17 HOH HOH . I 7 HOH A 11 393 18 HOH HOH . I 7 HOH A 12 394 19 HOH HOH . I 7 HOH A 13 395 20 HOH HOH . I 7 HOH A 14 396 22 HOH HOH . I 7 HOH A 15 397 23 HOH HOH . I 7 HOH A 16 398 24 HOH HOH . I 7 HOH A 17 399 25 HOH HOH . I 7 HOH A 18 400 26 HOH HOH . I 7 HOH A 19 401 27 HOH HOH . I 7 HOH A 20 402 28 HOH HOH . I 7 HOH A 21 403 29 HOH HOH . I 7 HOH A 22 404 30 HOH HOH . I 7 HOH A 23 405 31 HOH HOH . I 7 HOH A 24 406 32 HOH HOH . I 7 HOH A 25 407 33 HOH HOH . I 7 HOH A 26 408 34 HOH HOH . I 7 HOH A 27 409 35 HOH HOH . I 7 HOH A 28 410 36 HOH HOH . I 7 HOH A 29 411 37 HOH HOH . I 7 HOH A 30 412 38 HOH HOH . I 7 HOH A 31 413 39 HOH HOH . I 7 HOH A 32 414 40 HOH HOH . I 7 HOH A 33 415 41 HOH HOH . I 7 HOH A 34 416 42 HOH HOH . I 7 HOH A 35 417 43 HOH HOH . I 7 HOH A 36 418 44 HOH HOH . I 7 HOH A 37 419 45 HOH HOH . I 7 HOH A 38 420 46 HOH HOH . I 7 HOH A 39 421 47 HOH HOH . I 7 HOH A 40 422 48 HOH HOH . I 7 HOH A 41 423 49 HOH HOH . I 7 HOH A 42 424 50 HOH HOH . I 7 HOH A 43 425 51 HOH HOH . I 7 HOH A 44 426 52 HOH HOH . I 7 HOH A 45 427 53 HOH HOH . I 7 HOH A 46 428 54 HOH HOH . I 7 HOH A 47 429 55 HOH HOH . I 7 HOH A 48 430 56 HOH HOH . I 7 HOH A 49 431 57 HOH HOH . I 7 HOH A 50 432 58 HOH HOH . I 7 HOH A 51 433 59 HOH HOH . I 7 HOH A 52 434 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 LAR . . . E 4 19.291 78.83 23.817 1 36.07 ? S1 LAR 379 A 1 HETATM 2 N N1 LAR . . . E 4 20.777 76.804 24.18 1 37.27 ? N1 LAR 379 A 1 HETATM 3 O O1 LAR . . . E 4 22.484 75.447 28.678 1 31.11 ? O1 LAR 379 A 1 HETATM 4 O O2 LAR . . . E 4 23.553 77.476 28.364 1 32.26 ? O2 LAR 379 A 1 HETATM 5 O O3 LAR . . . E 4 23.458 79.138 25.236 1 35.09 ? O3 LAR 379 A 1 HETATM 6 O O4 LAR . . . E 4 21.438 78.726 26.289 1 37.12 ? O4 LAR 379 A 1 HETATM 7 O O5 LAR . . . E 4 18.535 76.473 24.391 1 34.24 ? O5 LAR 379 A 1 HETATM 8 C C1 LAR . . . E 4 22.799 76.518 29.166 1 31.93 ? C1 LAR 379 A 1 HETATM 9 C C2 LAR . . . E 4 22.374 76.778 30.56 1 33.53 ? C2 LAR 379 A 1 HETATM 10 C C3 LAR . . . E 4 22.501 77.924 31.254 1 35.36 ? C3 LAR 379 A 1 HETATM 11 C C4 LAR . . . E 4 23.115 79.162 30.657 1 35.62 ? C4 LAR 379 A 1 HETATM 12 C C5 LAR . . . E 4 24.569 79.314 31.102 1 35.46 ? C5 LAR 379 A 1 HETATM 13 C C6 LAR . . . E 4 24.926 80.776 30.939 1 36.24 ? C6 LAR 379 A 1 HETATM 14 C C7 LAR . . . E 4 25.255 81.191 29.714 1 36.18 ? C7 LAR 379 A 1 HETATM 15 C C8 LAR . . . E 4 25.488 82.175 28.858 1 34.52 ? C8 LAR 379 A 1 HETATM 16 C C9 LAR . . . E 4 25.81 82.46 27.619 1 33.64 ? C9 LAR 379 A 1 HETATM 17 C C10 LAR . . . E 4 24.617 82.456 26.685 1 34.12 ? C10 LAR 379 A 1 HETATM 18 C C11 LAR . . . E 4 24.944 81.625 25.45 1 31.89 ? C11 LAR 379 A 1 HETATM 19 C C12 LAR . . . E 4 25.515 80.261 25.837 1 31.96 ? C12 LAR 379 A 1 HETATM 20 C C13 LAR . . . E 4 24.443 79.265 26.261 1 32.56 ? C13 LAR 379 A 1 HETATM 21 C C14 LAR . . . E 4 25.085 77.911 26.499 1 32.91 ? C14 LAR 379 A 1 HETATM 22 C C15 LAR . . . E 4 24.043 76.978 27.092 1 33.25 ? C15 LAR 379 A 1 HETATM 23 C C16 LAR . . . E 4 22.956 76.833 26.026 1 34.37 ? C16 LAR 379 A 1 HETATM 24 C C17 LAR . . . E 4 22.428 78.149 25.42 1 35.84 ? C17 LAR 379 A 1 HETATM 25 C C18 LAR . . . E 4 21.801 77.843 24.049 1 36.34 ? C18 LAR 379 A 1 HETATM 26 C C19 LAR . . . E 4 21.021 79.032 23.476 1 36.73 ? C19 LAR 379 A 1 HETATM 27 C C20 LAR . . . E 4 19.499 77.206 24.167 1 37.28 ? C20 LAR 379 A 1 HETATM 28 C C21 LAR . . . E 4 21.994 77.976 32.672 1 35.32 ? C21 LAR 379 A 1 HETATM 29 C C22 LAR . . . E 4 24.194 83.886 26.344 1 35.01 ? C22 LAR 379 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 29 #