data_2A5X # _model_server_result.job_id vx-uovMEffZTqezUcrs0Gg _model_server_result.datetime_utc '2024-11-15 20:32:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":382}' # _entry.id 2A5X # _exptl.entry_id 2A5X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.62 _cell.angle_gamma 90 _cell.entry_id 2A5X _cell.length_a 207.377 _cell.length_b 54.372 _cell.length_c 36.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -5.425673 0 35.791089 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 263 A GLN 263 1_555 C CA CA . A CA 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc2 A OG SER 265 A SER 265 1_555 C CA CA . A CA 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc3 B CA CA . A CA 376 1_555 D O2G ANP . A ANP 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc4 B CA CA . A CA 376 1_555 D O1B ANP . A ANP 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc5 B CA CA . A CA 376 1_555 I O HOH . A HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc6 C CA CA . A CA 377 1_555 I O HOH . A HOH 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc7 C CA CA . A CA 377 1_555 I O HOH . A HOH 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc8 C CA CA . A CA 377 1_555 I O HOH . A HOH 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 349 n n C1 H11 MPD sing 350 n n C1 H12 MPD sing 351 n n C1 H13 MPD sing 352 n n C2 O2 MPD sing 353 n n C2 CM MPD sing 354 n n C2 C3 MPD sing 355 n n O2 HO2 MPD sing 356 n n CM HM1 MPD sing 357 n n CM HM2 MPD sing 358 n n CM HM3 MPD sing 359 n n C3 C4 MPD sing 360 n n C3 H31 MPD sing 361 n n C3 H32 MPD sing 362 n n C4 O4 MPD sing 363 n n C4 C5 MPD sing 364 n n C4 H4 MPD sing 365 n n O4 HO4 MPD sing 366 n n C5 H51 MPD sing 367 n n C5 H52 MPD sing 368 n n C5 H53 MPD sing 369 n n # _atom_sites.entry_id 2A5X _atom_sites.fract_transf_matrix[1][1] 0.004822 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000731 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018392 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02794 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 376 1 CA CA . C 2 CA A 1 377 7 CA CA . D 3 ANP A 1 378 2 ANP ANP . E 4 LAR A 1 379 3 LAR LAR . F 5 NSB A 1 380 6 NSB NSB . G 6 MPD A 1 381 4 MPD MPD . H 6 MPD A 1 382 5 MPD MPD . I 7 HOH A 1 383 8 HOH HOH . I 7 HOH A 2 384 9 HOH HOH . I 7 HOH A 3 385 10 HOH HOH . I 7 HOH A 4 386 11 HOH HOH . I 7 HOH A 5 387 12 HOH HOH . I 7 HOH A 6 388 13 HOH HOH . I 7 HOH A 7 389 14 HOH HOH . I 7 HOH A 8 390 15 HOH HOH . I 7 HOH A 9 391 16 HOH HOH . I 7 HOH A 10 392 17 HOH HOH . I 7 HOH A 11 393 18 HOH HOH . I 7 HOH A 12 394 19 HOH HOH . I 7 HOH A 13 395 20 HOH HOH . I 7 HOH A 14 396 22 HOH HOH . I 7 HOH A 15 397 23 HOH HOH . I 7 HOH A 16 398 24 HOH HOH . I 7 HOH A 17 399 25 HOH HOH . I 7 HOH A 18 400 26 HOH HOH . I 7 HOH A 19 401 27 HOH HOH . I 7 HOH A 20 402 28 HOH HOH . I 7 HOH A 21 403 29 HOH HOH . I 7 HOH A 22 404 30 HOH HOH . I 7 HOH A 23 405 31 HOH HOH . I 7 HOH A 24 406 32 HOH HOH . I 7 HOH A 25 407 33 HOH HOH . I 7 HOH A 26 408 34 HOH HOH . I 7 HOH A 27 409 35 HOH HOH . I 7 HOH A 28 410 36 HOH HOH . I 7 HOH A 29 411 37 HOH HOH . I 7 HOH A 30 412 38 HOH HOH . I 7 HOH A 31 413 39 HOH HOH . I 7 HOH A 32 414 40 HOH HOH . I 7 HOH A 33 415 41 HOH HOH . I 7 HOH A 34 416 42 HOH HOH . I 7 HOH A 35 417 43 HOH HOH . I 7 HOH A 36 418 44 HOH HOH . I 7 HOH A 37 419 45 HOH HOH . I 7 HOH A 38 420 46 HOH HOH . I 7 HOH A 39 421 47 HOH HOH . I 7 HOH A 40 422 48 HOH HOH . I 7 HOH A 41 423 49 HOH HOH . I 7 HOH A 42 424 50 HOH HOH . I 7 HOH A 43 425 51 HOH HOH . I 7 HOH A 44 426 52 HOH HOH . I 7 HOH A 45 427 53 HOH HOH . I 7 HOH A 46 428 54 HOH HOH . I 7 HOH A 47 429 55 HOH HOH . I 7 HOH A 48 430 56 HOH HOH . I 7 HOH A 49 431 57 HOH HOH . I 7 HOH A 50 432 58 HOH HOH . I 7 HOH A 51 433 59 HOH HOH . I 7 HOH A 52 434 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . H 6 35.51 50.482 25.577 1 54.74 ? C1 MPD 382 A 1 HETATM 2 C C2 MPD . . . H 6 35.069 51.84 26.138 1 53.96 ? C2 MPD 382 A 1 HETATM 3 O O2 MPD . . . H 6 33.828 51.654 26.865 1 54.72 ? O2 MPD 382 A 1 HETATM 4 C CM MPD . . . H 6 36.147 52.34 27.103 1 53.55 ? CM MPD 382 A 1 HETATM 5 C C3 MPD . . . H 6 34.751 52.827 25.009 1 52.49 ? C3 MPD 382 A 1 HETATM 6 C C4 MPD . . . H 6 34.611 54.299 25.43 1 50.74 ? C4 MPD 382 A 1 HETATM 7 O O4 MPD . . . H 6 34.232 55.04 24.302 1 49.58 ? O4 MPD 382 A 1 HETATM 8 C C5 MPD . . . H 6 33.584 54.585 26.521 1 49.84 ? C5 MPD 382 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #