data_2A5Y # _model_server_result.job_id Hccal00K28nFC-KMmL16Fw _model_server_result.datetime_utc '2025-03-05 02:35:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a5y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":550}' # _entry.id 2A5Y # _exptl.entry_id 2A5Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2A5Y _cell.length_a 128.898 _cell.length_b 128.898 _cell.length_c 209.928 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A5Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OG SER 166 B SER 166 1_555 D MG MG . B MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc2 D MG MG . B MG 550 1_555 E O2G ATP . B ATP 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc3 D MG MG . B MG 550 1_555 E O1B ATP . B ATP 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc4 D MG MG . B MG 550 1_555 I O HOH . B HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.98 ? metalc ? metalc5 C OG SER 166 C SER 166 1_555 F MG MG . C MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc6 C OD2 ASP 250 C ASP 250 1_555 F MG MG . C MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.067 ? metalc ? metalc7 F MG MG . C MG 550 1_555 G O1B ATP . C ATP 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.003 ? metalc ? metalc8 F MG MG . C MG 550 1_555 G O1G ATP . C ATP 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2A5Y _atom_sites.fract_transf_matrix[1][1] 0.007758 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007758 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004764 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 MG B 1 550 1 MG MG . E 4 ATP B 1 551 1 ATP ATP . F 3 MG C 1 550 2 MG MG . G 4 ATP C 1 551 1 ATP ATP . H 5 HOH A 1 252 2 HOH TIP . H 5 HOH A 2 253 3 HOH TIP . H 5 HOH A 3 254 4 HOH TIP . H 5 HOH A 4 255 6 HOH TIP . H 5 HOH A 5 256 14 HOH TIP . H 5 HOH A 6 257 18 HOH TIP . H 5 HOH A 7 258 23 HOH TIP . H 5 HOH A 8 259 27 HOH TIP . H 5 HOH A 9 260 39 HOH TIP . H 5 HOH A 10 261 61 HOH TIP . H 5 HOH A 11 262 69 HOH TIP . H 5 HOH A 12 263 85 HOH TIP . H 5 HOH A 13 264 87 HOH TIP . H 5 HOH A 14 265 88 HOH TIP . H 5 HOH A 15 266 102 HOH TIP . H 5 HOH A 16 267 130 HOH TIP . H 5 HOH A 17 268 152 HOH TIP . H 5 HOH A 18 269 156 HOH TIP . H 5 HOH A 19 270 158 HOH TIP . H 5 HOH A 20 271 160 HOH TIP . H 5 HOH A 21 272 169 HOH TIP . H 5 HOH A 22 273 170 HOH TIP . H 5 HOH A 23 274 173 HOH TIP . H 5 HOH A 24 275 183 HOH TIP . H 5 HOH A 25 276 186 HOH TIP . H 5 HOH A 26 277 203 HOH TIP . H 5 HOH A 27 278 207 HOH TIP . H 5 HOH A 28 279 208 HOH TIP . H 5 HOH A 29 280 214 HOH TIP . H 5 HOH A 30 281 215 HOH TIP . H 5 HOH A 31 282 217 HOH TIP . H 5 HOH A 32 283 255 HOH TIP . I 5 HOH B 1 552 5 HOH TIP . I 5 HOH B 2 553 7 HOH TIP . I 5 HOH B 3 554 11 HOH TIP . I 5 HOH B 4 555 12 HOH TIP . I 5 HOH B 5 556 15 HOH TIP . I 5 HOH B 6 557 16 HOH TIP . I 5 HOH B 7 558 19 HOH TIP . I 5 HOH B 8 559 20 HOH TIP . I 5 HOH B 9 560 21 HOH TIP . I 5 HOH B 10 561 24 HOH TIP . I 5 HOH B 11 562 25 HOH TIP . I 5 HOH B 12 563 26 HOH TIP . I 5 HOH B 13 564 28 HOH TIP . I 5 HOH B 14 565 29 HOH TIP . I 5 HOH B 15 566 31 HOH TIP . I 5 HOH B 16 567 33 HOH TIP . I 5 HOH B 17 568 34 HOH TIP . I 5 HOH B 18 569 35 HOH TIP . I 5 HOH B 19 570 36 HOH TIP . I 5 HOH B 20 571 37 HOH TIP . I 5 HOH B 21 572 38 HOH TIP . I 5 HOH B 22 573 40 HOH TIP . I 5 HOH B 23 574 41 HOH TIP . I 5 HOH B 24 575 42 HOH TIP . I 5 HOH B 25 576 43 HOH TIP . I 5 HOH B 26 577 44 HOH TIP . I 5 HOH B 27 578 46 HOH TIP . I 5 HOH B 28 579 47 HOH TIP . I 5 HOH B 29 580 49 HOH TIP . I 5 HOH B 30 581 51 HOH TIP . I 5 HOH B 31 582 54 HOH TIP . I 5 HOH B 32 583 59 HOH TIP . I 5 HOH B 33 584 60 HOH TIP . I 5 HOH B 34 585 62 HOH TIP . I 5 HOH B 35 586 64 HOH TIP . I 5 HOH B 36 587 66 HOH TIP . I 5 HOH B 37 588 67 HOH TIP . I 5 HOH B 38 589 68 HOH TIP . I 5 HOH B 39 590 70 HOH TIP . I 5 HOH B 40 591 71 HOH TIP . I 5 HOH B 41 592 72 HOH TIP . I 5 HOH B 42 593 77 HOH TIP . I 5 HOH B 43 594 78 HOH TIP . I 5 HOH B 44 595 79 HOH TIP . I 5 HOH B 45 596 80 HOH TIP . I 5 HOH B 46 597 81 HOH TIP . I 5 HOH B 47 598 83 HOH TIP . I 5 HOH B 48 599 90 HOH TIP . I 5 HOH B 49 600 94 HOH TIP . I 5 HOH B 50 601 95 HOH TIP . I 5 HOH B 51 602 96 HOH TIP . I 5 HOH B 52 603 97 HOH TIP . I 5 HOH B 53 604 99 HOH TIP . I 5 HOH B 54 605 100 HOH TIP . I 5 HOH B 55 606 103 HOH TIP . I 5 HOH B 56 607 104 HOH TIP . I 5 HOH B 57 608 106 HOH TIP . I 5 HOH B 58 609 107 HOH TIP . I 5 HOH B 59 610 108 HOH TIP . I 5 HOH B 60 611 109 HOH TIP . I 5 HOH B 61 612 112 HOH TIP . I 5 HOH B 62 613 113 HOH TIP . I 5 HOH B 63 614 114 HOH TIP . I 5 HOH B 64 615 117 HOH TIP . I 5 HOH B 65 616 119 HOH TIP . I 5 HOH B 66 617 120 HOH TIP . I 5 HOH B 67 618 121 HOH TIP . I 5 HOH B 68 619 122 HOH TIP . I 5 HOH B 69 620 123 HOH TIP . I 5 HOH B 70 621 125 HOH TIP . I 5 HOH B 71 622 126 HOH TIP . I 5 HOH B 72 623 128 HOH TIP . I 5 HOH B 73 624 129 HOH TIP . I 5 HOH B 74 625 131 HOH TIP . I 5 HOH B 75 626 133 HOH TIP . I 5 HOH B 76 627 134 HOH TIP . I 5 HOH B 77 628 136 HOH TIP . I 5 HOH B 78 629 137 HOH TIP . I 5 HOH B 79 630 139 HOH TIP . I 5 HOH B 80 631 141 HOH TIP . I 5 HOH B 81 632 143 HOH TIP . I 5 HOH B 82 633 145 HOH TIP . I 5 HOH B 83 634 146 HOH TIP . I 5 HOH B 84 635 147 HOH TIP . I 5 HOH B 85 636 148 HOH TIP . I 5 HOH B 86 637 149 HOH TIP . I 5 HOH B 87 638 150 HOH TIP . I 5 HOH B 88 639 154 HOH TIP . I 5 HOH B 89 640 155 HOH TIP . I 5 HOH B 90 641 159 HOH TIP . I 5 HOH B 91 642 161 HOH TIP . I 5 HOH B 92 643 163 HOH TIP . I 5 HOH B 93 644 164 HOH TIP . I 5 HOH B 94 645 165 HOH TIP . I 5 HOH B 95 646 166 HOH TIP . I 5 HOH B 96 647 167 HOH TIP . I 5 HOH B 97 648 171 HOH TIP . I 5 HOH B 98 649 172 HOH TIP . I 5 HOH B 99 650 174 HOH TIP . I 5 HOH B 100 651 175 HOH TIP . I 5 HOH B 101 652 177 HOH TIP . I 5 HOH B 102 653 179 HOH TIP . I 5 HOH B 103 654 180 HOH TIP . I 5 HOH B 104 655 181 HOH TIP . I 5 HOH B 105 656 184 HOH TIP . I 5 HOH B 106 657 185 HOH TIP . I 5 HOH B 107 658 187 HOH TIP . I 5 HOH B 108 659 189 HOH TIP . I 5 HOH B 109 660 192 HOH TIP . I 5 HOH B 110 661 193 HOH TIP . I 5 HOH B 111 662 194 HOH TIP . I 5 HOH B 112 663 195 HOH TIP . I 5 HOH B 113 664 196 HOH TIP . I 5 HOH B 114 665 197 HOH TIP . I 5 HOH B 115 666 201 HOH TIP . I 5 HOH B 116 667 202 HOH TIP . I 5 HOH B 117 668 204 HOH TIP . I 5 HOH B 118 669 205 HOH TIP . I 5 HOH B 119 670 209 HOH TIP . I 5 HOH B 120 671 211 HOH TIP . I 5 HOH B 121 672 218 HOH TIP . I 5 HOH B 122 673 219 HOH TIP . I 5 HOH B 123 674 220 HOH TIP . I 5 HOH B 124 675 221 HOH TIP . I 5 HOH B 125 676 222 HOH TIP . I 5 HOH B 126 677 223 HOH TIP . I 5 HOH B 127 678 224 HOH TIP . I 5 HOH B 128 679 225 HOH TIP . I 5 HOH B 129 680 226 HOH TIP . I 5 HOH B 130 681 228 HOH TIP . I 5 HOH B 131 682 229 HOH TIP . I 5 HOH B 132 683 231 HOH TIP . I 5 HOH B 133 684 233 HOH TIP . I 5 HOH B 134 685 234 HOH TIP . I 5 HOH B 135 686 236 HOH TIP . I 5 HOH B 136 687 239 HOH TIP . I 5 HOH B 137 688 241 HOH TIP . I 5 HOH B 138 689 243 HOH TIP . I 5 HOH B 139 690 244 HOH TIP . I 5 HOH B 140 691 246 HOH TIP . I 5 HOH B 141 692 247 HOH TIP . I 5 HOH B 142 693 249 HOH TIP . I 5 HOH B 143 694 251 HOH TIP . I 5 HOH B 144 695 253 HOH TIP . I 5 HOH B 145 696 257 HOH TIP . J 5 HOH C 1 552 1 HOH TIP . J 5 HOH C 2 553 8 HOH TIP . J 5 HOH C 3 554 9 HOH TIP . J 5 HOH C 4 555 10 HOH TIP . J 5 HOH C 5 556 13 HOH TIP . J 5 HOH C 6 557 17 HOH TIP . J 5 HOH C 7 558 22 HOH TIP . J 5 HOH C 8 559 30 HOH TIP . J 5 HOH C 9 560 32 HOH TIP . J 5 HOH C 10 561 45 HOH TIP . J 5 HOH C 11 562 48 HOH TIP . J 5 HOH C 12 563 50 HOH TIP . J 5 HOH C 13 564 52 HOH TIP . J 5 HOH C 14 565 53 HOH TIP . J 5 HOH C 15 566 55 HOH TIP . J 5 HOH C 16 567 56 HOH TIP . J 5 HOH C 17 568 57 HOH TIP . J 5 HOH C 18 569 58 HOH TIP . J 5 HOH C 19 570 63 HOH TIP . J 5 HOH C 20 571 65 HOH TIP . J 5 HOH C 21 572 73 HOH TIP . J 5 HOH C 22 573 74 HOH TIP . J 5 HOH C 23 574 75 HOH TIP . J 5 HOH C 24 575 76 HOH TIP . J 5 HOH C 25 576 82 HOH TIP . J 5 HOH C 26 577 84 HOH TIP . J 5 HOH C 27 578 86 HOH TIP . J 5 HOH C 28 579 89 HOH TIP . J 5 HOH C 29 580 91 HOH TIP . J 5 HOH C 30 581 92 HOH TIP . J 5 HOH C 31 582 93 HOH TIP . J 5 HOH C 32 583 98 HOH TIP . J 5 HOH C 33 584 101 HOH TIP . J 5 HOH C 34 585 105 HOH TIP . J 5 HOH C 35 586 110 HOH TIP . J 5 HOH C 36 587 111 HOH TIP . J 5 HOH C 37 588 115 HOH TIP . J 5 HOH C 38 589 116 HOH TIP . J 5 HOH C 39 590 118 HOH TIP . J 5 HOH C 40 591 124 HOH TIP . J 5 HOH C 41 592 127 HOH TIP . J 5 HOH C 42 593 132 HOH TIP . J 5 HOH C 43 594 135 HOH TIP . J 5 HOH C 44 595 138 HOH TIP . J 5 HOH C 45 596 140 HOH TIP . J 5 HOH C 46 597 142 HOH TIP . J 5 HOH C 47 598 144 HOH TIP . J 5 HOH C 48 599 151 HOH TIP . J 5 HOH C 49 600 153 HOH TIP . J 5 HOH C 50 601 157 HOH TIP . J 5 HOH C 51 602 162 HOH TIP . J 5 HOH C 52 603 168 HOH TIP . J 5 HOH C 53 604 176 HOH TIP . J 5 HOH C 54 605 178 HOH TIP . J 5 HOH C 55 606 182 HOH TIP . J 5 HOH C 56 607 188 HOH TIP . J 5 HOH C 57 608 190 HOH TIP . J 5 HOH C 58 609 191 HOH TIP . J 5 HOH C 59 610 198 HOH TIP . J 5 HOH C 60 611 199 HOH TIP . J 5 HOH C 61 612 200 HOH TIP . J 5 HOH C 62 613 206 HOH TIP . J 5 HOH C 63 614 210 HOH TIP . J 5 HOH C 64 615 212 HOH TIP . J 5 HOH C 65 616 213 HOH TIP . J 5 HOH C 66 617 216 HOH TIP . J 5 HOH C 67 618 227 HOH TIP . J 5 HOH C 68 619 230 HOH TIP . J 5 HOH C 69 620 232 HOH TIP . J 5 HOH C 70 621 235 HOH TIP . J 5 HOH C 71 622 237 HOH TIP . J 5 HOH C 72 623 238 HOH TIP . J 5 HOH C 73 624 240 HOH TIP . J 5 HOH C 74 625 242 HOH TIP . J 5 HOH C 75 626 245 HOH TIP . J 5 HOH C 76 627 248 HOH TIP . J 5 HOH C 77 628 250 HOH TIP . J 5 HOH C 78 629 252 HOH TIP . J 5 HOH C 79 630 254 HOH TIP . J 5 HOH C 80 631 256 HOH TIP . J 5 HOH C 81 632 258 HOH TIP . J 5 HOH C 82 633 259 HOH TIP . J 5 HOH C 83 634 260 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 87.773 _atom_site.Cartn_y 18.693 _atom_site.Cartn_z 101.218 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 68.09 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 550 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #