data_2A7M
#
_model_server_result.job_id            NPd7o8tJespNYSaUzcLOCg 
_model_server_result.datetime_utc      '2024-11-08 03:04:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2a7m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":800}' 
#
_entry.id    2A7M 
#
_exptl.entry_id    2A7M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2A7M 
_cell.length_a            54.6 
_cell.length_b            55.551 
_cell.length_c            80.094 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2A7M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 104 A HIS 104 1_555 C ZN ZN . A ZN 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc2 A ND1 HIS 106 A HIS 106 1_555 C ZN ZN . A ZN 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc3 A OD1 ASP 108 A ASP 108 1_555 B ZN ZN . A ZN 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc4 A NE2 HIS 109 A HIS 109 1_555 B ZN ZN . A ZN 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc5 A NE2 HIS 169 A HIS 169 1_555 C ZN ZN . A ZN 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc6 A OD2 ASP 191 A ASP 191 1_555 B ZN ZN . A ZN 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc7 A OD2 ASP 191 A ASP 191 1_555 C ZN ZN . A ZN 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? 
metalc ? metalc8 A NE2 HIS 235 A HIS 235 1_555 B ZN ZN . A ZN 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc9 B ZN ZN . A ZN 251 1_555 L O HOH . A HOH 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
metalc ? metalc10 C ZN ZN . A ZN 252 1_555 L O HOH . A HOH 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     2A7M 
_atom_sites.fract_transf_matrix[1][1]    0.018315 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018001 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012485 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 251 251 ZN ZN . 
C 2 ZN A 1 252 252 ZN ZN . 
D 3 GOL A 1 800 800 GOL GOL . 
E 3 GOL A 1 805 805 GOL GOL . 
F 3 GOL A 1 810 810 GOL GOL . 
G 3 GOL A 1 815 815 GOL GOL . 
H 3 GOL A 1 820 820 GOL GOL . 
I 3 GOL A 1 825 825 GOL GOL . 
J 3 GOL A 1 830 830 GOL GOL . 
K 3 GOL A 1 835 835 GOL GOL . 
L 4 HOH A 1 253 253 HOH HOH . 
L 4 HOH A 2 300 300 HOH HOH . 
L 4 HOH A 3 301 301 HOH HOH . 
L 4 HOH A 4 302 302 HOH HOH . 
L 4 HOH A 5 303 303 HOH HOH . 
L 4 HOH A 6 304 304 HOH HOH . 
L 4 HOH A 7 305 305 HOH HOH . 
L 4 HOH A 8 306 306 HOH HOH . 
L 4 HOH A 9 307 307 HOH HOH . 
L 4 HOH A 10 308 308 HOH HOH . 
L 4 HOH A 11 309 309 HOH HOH . 
L 4 HOH A 12 310 310 HOH HOH . 
L 4 HOH A 13 311 311 HOH HOH . 
L 4 HOH A 14 312 312 HOH HOH . 
L 4 HOH A 15 313 313 HOH HOH . 
L 4 HOH A 16 314 314 HOH HOH . 
L 4 HOH A 17 315 315 HOH HOH . 
L 4 HOH A 18 316 316 HOH HOH . 
L 4 HOH A 19 317 317 HOH HOH . 
L 4 HOH A 20 318 318 HOH HOH . 
L 4 HOH A 21 319 319 HOH HOH . 
L 4 HOH A 22 320 320 HOH HOH . 
L 4 HOH A 23 321 321 HOH HOH . 
L 4 HOH A 24 322 322 HOH HOH . 
L 4 HOH A 25 323 323 HOH HOH . 
L 4 HOH A 26 324 324 HOH HOH . 
L 4 HOH A 27 325 325 HOH HOH . 
L 4 HOH A 28 326 326 HOH HOH . 
L 4 HOH A 29 327 327 HOH HOH . 
L 4 HOH A 30 328 328 HOH HOH . 
L 4 HOH A 31 329 329 HOH HOH . 
L 4 HOH A 32 330 330 HOH HOH . 
L 4 HOH A 33 331 331 HOH HOH . 
L 4 HOH A 34 332 332 HOH HOH . 
L 4 HOH A 35 333 333 HOH HOH . 
L 4 HOH A 36 334 334 HOH HOH . 
L 4 HOH A 37 335 335 HOH HOH . 
L 4 HOH A 38 336 336 HOH HOH . 
L 4 HOH A 39 337 337 HOH HOH . 
L 4 HOH A 40 338 338 HOH HOH . 
L 4 HOH A 41 339 339 HOH HOH . 
L 4 HOH A 42 340 340 HOH HOH . 
L 4 HOH A 43 341 341 HOH HOH . 
L 4 HOH A 44 342 342 HOH HOH . 
L 4 HOH A 45 343 343 HOH HOH . 
L 4 HOH A 46 344 344 HOH HOH . 
L 4 HOH A 47 345 345 HOH HOH . 
L 4 HOH A 48 346 346 HOH HOH . 
L 4 HOH A 49 347 347 HOH HOH . 
L 4 HOH A 50 348 348 HOH HOH . 
L 4 HOH A 51 349 349 HOH HOH . 
L 4 HOH A 52 350 350 HOH HOH . 
L 4 HOH A 53 351 351 HOH HOH . 
L 4 HOH A 54 352 352 HOH HOH . 
L 4 HOH A 55 353 353 HOH HOH . 
L 4 HOH A 56 354 354 HOH HOH . 
L 4 HOH A 57 355 355 HOH HOH . 
L 4 HOH A 58 356 356 HOH HOH . 
L 4 HOH A 59 357 357 HOH HOH . 
L 4 HOH A 60 358 358 HOH HOH . 
L 4 HOH A 61 359 359 HOH HOH . 
L 4 HOH A 62 360 360 HOH HOH . 
L 4 HOH A 63 361 361 HOH HOH . 
L 4 HOH A 64 362 362 HOH HOH . 
L 4 HOH A 65 363 363 HOH HOH . 
L 4 HOH A 66 364 364 HOH HOH . 
L 4 HOH A 67 365 365 HOH HOH . 
L 4 HOH A 68 366 366 HOH HOH . 
L 4 HOH A 69 367 367 HOH HOH . 
L 4 HOH A 70 368 368 HOH HOH . 
L 4 HOH A 71 369 369 HOH HOH . 
L 4 HOH A 72 370 370 HOH HOH . 
L 4 HOH A 73 371 371 HOH HOH . 
L 4 HOH A 74 372 372 HOH HOH . 
L 4 HOH A 75 373 373 HOH HOH . 
L 4 HOH A 76 374 374 HOH HOH . 
L 4 HOH A 77 375 375 HOH HOH . 
L 4 HOH A 78 376 376 HOH HOH . 
L 4 HOH A 79 377 377 HOH HOH . 
L 4 HOH A 80 378 378 HOH HOH . 
L 4 HOH A 81 379 379 HOH HOH . 
L 4 HOH A 82 380 380 HOH HOH . 
L 4 HOH A 83 381 381 HOH HOH . 
L 4 HOH A 84 382 382 HOH HOH . 
L 4 HOH A 85 383 383 HOH HOH . 
L 4 HOH A 86 384 384 HOH HOH . 
L 4 HOH A 87 385 385 HOH HOH . 
L 4 HOH A 88 386 386 HOH HOH . 
L 4 HOH A 89 387 387 HOH HOH . 
L 4 HOH A 90 388 388 HOH HOH . 
L 4 HOH A 91 389 389 HOH HOH . 
L 4 HOH A 92 390 390 HOH HOH . 
L 4 HOH A 93 391 391 HOH HOH . 
L 4 HOH A 94 392 392 HOH HOH . 
L 4 HOH A 95 393 393 HOH HOH . 
L 4 HOH A 96 394 394 HOH HOH . 
L 4 HOH A 97 395 395 HOH HOH . 
L 4 HOH A 98 396 396 HOH HOH . 
L 4 HOH A 99 397 397 HOH HOH . 
L 4 HOH A 100 398 398 HOH HOH . 
L 4 HOH A 101 399 399 HOH HOH . 
L 4 HOH A 102 400 400 HOH HOH . 
L 4 HOH A 103 401 401 HOH HOH . 
L 4 HOH A 104 402 402 HOH HOH . 
L 4 HOH A 105 403 403 HOH HOH . 
L 4 HOH A 106 404 404 HOH HOH . 
L 4 HOH A 107 405 405 HOH HOH . 
L 4 HOH A 108 406 406 HOH HOH . 
L 4 HOH A 109 407 407 HOH HOH . 
L 4 HOH A 110 408 408 HOH HOH . 
L 4 HOH A 111 409 409 HOH HOH . 
L 4 HOH A 112 410 410 HOH HOH . 
L 4 HOH A 113 411 411 HOH HOH . 
L 4 HOH A 114 412 412 HOH HOH . 
L 4 HOH A 115 413 413 HOH HOH . 
L 4 HOH A 116 414 414 HOH HOH . 
L 4 HOH A 117 415 415 HOH HOH . 
L 4 HOH A 118 416 416 HOH HOH . 
L 4 HOH A 119 417 417 HOH HOH . 
L 4 HOH A 120 418 418 HOH HOH . 
L 4 HOH A 121 419 419 HOH HOH . 
L 4 HOH A 122 420 420 HOH HOH . 
L 4 HOH A 123 421 421 HOH HOH . 
L 4 HOH A 124 422 422 HOH HOH . 
L 4 HOH A 125 423 423 HOH HOH . 
L 4 HOH A 126 424 424 HOH HOH . 
L 4 HOH A 127 425 425 HOH HOH . 
L 4 HOH A 128 426 426 HOH HOH . 
L 4 HOH A 129 427 427 HOH HOH . 
L 4 HOH A 130 428 428 HOH HOH . 
L 4 HOH A 131 429 429 HOH HOH . 
L 4 HOH A 132 430 430 HOH HOH . 
L 4 HOH A 133 431 431 HOH HOH . 
L 4 HOH A 134 432 432 HOH HOH . 
L 4 HOH A 135 433 433 HOH HOH . 
L 4 HOH A 136 434 434 HOH HOH . 
L 4 HOH A 137 435 435 HOH HOH . 
L 4 HOH A 138 436 436 HOH HOH . 
L 4 HOH A 139 437 437 HOH HOH . 
L 4 HOH A 140 438 438 HOH HOH . 
L 4 HOH A 141 439 439 HOH HOH . 
L 4 HOH A 142 440 440 HOH HOH . 
L 4 HOH A 143 441 441 HOH HOH . 
L 4 HOH A 144 442 442 HOH HOH . 
L 4 HOH A 145 443 443 HOH HOH . 
L 4 HOH A 146 444 444 HOH HOH . 
L 4 HOH A 147 445 445 HOH HOH . 
L 4 HOH A 148 446 446 HOH HOH . 
L 4 HOH A 149 447 447 HOH HOH . 
L 4 HOH A 150 448 448 HOH HOH . 
L 4 HOH A 151 449 449 HOH HOH . 
L 4 HOH A 152 450 450 HOH HOH . 
L 4 HOH A 153 451 451 HOH HOH . 
L 4 HOH A 154 452 452 HOH HOH . 
L 4 HOH A 155 453 453 HOH HOH . 
L 4 HOH A 156 454 454 HOH HOH . 
L 4 HOH A 157 455 455 HOH HOH . 
L 4 HOH A 158 456 456 HOH HOH . 
L 4 HOH A 159 457 457 HOH HOH . 
L 4 HOH A 160 458 458 HOH HOH . 
L 4 HOH A 161 459 459 HOH HOH . 
L 4 HOH A 162 460 460 HOH HOH . 
L 4 HOH A 163 461 461 HOH HOH . 
L 4 HOH A 164 462 462 HOH HOH . 
L 4 HOH A 165 463 463 HOH HOH . 
L 4 HOH A 166 464 464 HOH HOH . 
L 4 HOH A 167 465 465 HOH HOH . 
L 4 HOH A 168 466 466 HOH HOH . 
L 4 HOH A 169 467 467 HOH HOH . 
L 4 HOH A 170 468 468 HOH HOH . 
L 4 HOH A 171 469 469 HOH HOH . 
L 4 HOH A 172 470 470 HOH HOH . 
L 4 HOH A 173 471 471 HOH HOH . 
L 4 HOH A 174 472 472 HOH HOH . 
L 4 HOH A 175 473 473 HOH HOH . 
L 4 HOH A 176 474 474 HOH HOH . 
L 4 HOH A 177 475 475 HOH HOH . 
L 4 HOH A 178 476 476 HOH HOH . 
L 4 HOH A 179 477 477 HOH HOH . 
L 4 HOH A 180 478 478 HOH HOH . 
L 4 HOH A 181 479 479 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 26.593 41.4 42.397 1 33.57 ? C1 GOL 800 A 1 
HETATM 2 O O1 GOL . . . D 3 27.192 41.46 43.675 1 34.42 ? O1 GOL 800 A 1 
HETATM 3 C C2 GOL . . . D 3 27.597 41.887 41.369 1 32.38 ? C2 GOL 800 A 1 
HETATM 4 O O2 GOL . . . D 3 27.681 43.292 41.408 1 27.89 ? O2 GOL 800 A 1 
HETATM 5 C C3 GOL . . . D 3 27.2 41.412 39.972 1 33.9 ? C3 GOL 800 A 1 
HETATM 6 O O3 GOL . . . D 3 26.156 42.202 39.439 1 31.65 ? O3 GOL 800 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#