data_2A7Q # _model_server_result.job_id OuL2wftNtWVyW0t85QkyUg _model_server_result.datetime_utc '2024-12-03 00:22:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a7q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 2A7Q # _exptl.entry_id 2A7Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2A7Q _cell.length_a 80.145 _cell.length_b 80.145 _cell.length_c 93.669 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A7Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 80.145 80.145 46.8345 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 130 A GLU 127 1_555 B MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc2 B MG MG . A MG 300 1_555 C O3B ADP . A ADP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 2A7Q _atom_sites.fract_transf_matrix[1][1] 0.012477 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012477 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010676 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 300 300 MG MG . C 3 ADP A 1 301 301 ADP ADP . D 4 CFB A 1 328 328 CFB CFB . E 5 HOH A 1 329 1 HOH HOH . E 5 HOH A 2 330 2 HOH HOH . E 5 HOH A 3 331 3 HOH HOH . E 5 HOH A 4 332 4 HOH HOH . E 5 HOH A 5 333 5 HOH HOH . E 5 HOH A 6 334 6 HOH HOH . E 5 HOH A 7 335 7 HOH HOH . E 5 HOH A 8 336 8 HOH HOH . E 5 HOH A 9 337 9 HOH HOH . E 5 HOH A 10 338 10 HOH HOH . E 5 HOH A 11 339 11 HOH HOH . E 5 HOH A 12 340 12 HOH HOH . E 5 HOH A 13 341 13 HOH HOH . E 5 HOH A 14 342 14 HOH HOH . E 5 HOH A 15 343 15 HOH HOH . E 5 HOH A 16 344 16 HOH HOH . E 5 HOH A 17 345 17 HOH HOH . E 5 HOH A 18 346 18 HOH HOH . E 5 HOH A 19 347 19 HOH HOH . E 5 HOH A 20 348 20 HOH HOH . E 5 HOH A 21 349 21 HOH HOH . E 5 HOH A 22 350 22 HOH HOH . E 5 HOH A 23 351 23 HOH HOH . E 5 HOH A 24 352 24 HOH HOH . E 5 HOH A 25 353 25 HOH HOH . E 5 HOH A 26 354 26 HOH HOH . E 5 HOH A 27 355 27 HOH HOH . E 5 HOH A 28 356 28 HOH HOH . E 5 HOH A 29 357 29 HOH HOH . E 5 HOH A 30 358 30 HOH HOH . E 5 HOH A 31 359 31 HOH HOH . E 5 HOH A 32 360 32 HOH HOH . E 5 HOH A 33 361 33 HOH HOH . E 5 HOH A 34 362 34 HOH HOH . E 5 HOH A 35 363 35 HOH HOH . E 5 HOH A 36 364 36 HOH HOH . E 5 HOH A 37 365 37 HOH HOH . E 5 HOH A 38 366 38 HOH HOH . E 5 HOH A 39 367 39 HOH HOH . E 5 HOH A 40 368 40 HOH HOH . E 5 HOH A 41 369 41 HOH HOH . E 5 HOH A 42 370 42 HOH HOH . E 5 HOH A 43 371 43 HOH HOH . E 5 HOH A 44 372 44 HOH HOH . E 5 HOH A 45 373 45 HOH HOH . E 5 HOH A 46 374 46 HOH HOH . E 5 HOH A 47 375 47 HOH HOH . E 5 HOH A 48 376 48 HOH HOH . E 5 HOH A 49 377 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 3 72.711 42.768 19.17 1 66.77 ? PB ADP 301 A 1 HETATM 2 O O1B ADP . . . C 3 72.022 44.04 19.401 1 71.64 ? O1B ADP 301 A 1 HETATM 3 O O2B ADP . . . C 3 72.165 42.024 17.862 1 71.27 ? O2B ADP 301 A 1 HETATM 4 O O3B ADP . . . C 3 72.489 41.757 20.394 1 72.37 ? O3B ADP 301 A 1 HETATM 5 P PA ADP . . . C 3 74.902 43.841 20.267 1 66.99 ? PA ADP 301 A 1 HETATM 6 O O1A ADP . . . C 3 74.396 45.246 20.234 1 60.79 ? O1A ADP 301 A 1 HETATM 7 O O2A ADP . . . C 3 74.536 43.152 21.683 1 67.9 ? O2A ADP 301 A 1 HETATM 8 O O3A ADP . . . C 3 74.285 42.964 19.038 1 70.88 ? O3A ADP 301 A 1 HETATM 9 O O5' ADP . . . C 3 76.488 43.798 20.01 1 69.01 ? O5' ADP 301 A 1 HETATM 10 C C5' ADP . . . C 3 77.056 44.612 20.984 1 74.12 ? C5' ADP 301 A 1 HETATM 11 C C4' ADP . . . C 3 78.557 44.573 20.888 1 74.37 ? C4' ADP 301 A 1 HETATM 12 O O4' ADP . . . C 3 79.046 44.819 19.56 1 73.38 ? O4' ADP 301 A 1 HETATM 13 C C3' ADP . . . C 3 79.043 45.617 21.861 1 75.49 ? C3' ADP 301 A 1 HETATM 14 O O3' ADP . . . C 3 79.962 45.139 22.839 1 80.27 ? O3' ADP 301 A 1 HETATM 15 C C2' ADP . . . C 3 79.615 46.755 20.968 1 76.31 ? C2' ADP 301 A 1 HETATM 16 O O2' ADP . . . C 3 80.933 47.102 21.424 1 79.95 ? O2' ADP 301 A 1 HETATM 17 C C1' ADP . . . C 3 79.689 46.122 19.544 1 75.24 ? C1' ADP 301 A 1 HETATM 18 N N9 ADP . . . C 3 79.097 46.912 18.448 1 73.13 ? N9 ADP 301 A 1 HETATM 19 C C8 ADP . . . C 3 77.783 46.94 18.071 1 73.21 ? C8 ADP 301 A 1 HETATM 20 N N7 ADP . . . C 3 77.622 47.726 17.05 1 72.22 ? N7 ADP 301 A 1 HETATM 21 C C5 ADP . . . C 3 78.815 48.255 16.7 1 72.95 ? C5 ADP 301 A 1 HETATM 22 C C6 ADP . . . C 3 79.271 49.15 15.691 1 73.52 ? C6 ADP 301 A 1 HETATM 23 N N6 ADP . . . C 3 78.392 49.695 14.768 1 73.02 ? N6 ADP 301 A 1 HETATM 24 N N1 ADP . . . C 3 80.592 49.463 15.645 1 74.71 ? N1 ADP 301 A 1 HETATM 25 C C2 ADP . . . C 3 81.469 48.956 16.514 1 72.67 ? C2 ADP 301 A 1 HETATM 26 N N3 ADP . . . C 3 81.084 48.116 17.467 1 72.16 ? N3 ADP 301 A 1 HETATM 27 C C4 ADP . . . C 3 79.783 47.742 17.597 1 73.18 ? C4 ADP 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #