data_2A7Q # _model_server_result.job_id roZC2nBjnmL1DxK7lDTZwA _model_server_result.datetime_utc '2024-12-03 00:21:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a7q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":328}' # _entry.id 2A7Q # _exptl.entry_id 2A7Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 303.677 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-CHLORO-9-(2-DEOXY-2-FLUORO-B -D-ARABINOFURANOSYL)-9H-PURIN-6-AMINE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2A7Q _cell.length_a 80.145 _cell.length_b 80.145 _cell.length_c 93.669 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A7Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 80.145 80.145 46.8345 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 130 A GLU 127 1_555 B MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc2 B MG MG . A MG 300 1_555 C O3B ADP . A ADP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? # _chem_comp.formula 'C10 H11 Cl F N5 O3' _chem_comp.formula_weight 303.677 _chem_comp.id CFB _chem_comp.mon_nstd_flag . _chem_comp.name '2-CHLORO-9-(2-DEOXY-2-FLUORO-B -D-ARABINOFURANOSYL)-9H-PURIN-6-AMINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CLOFARABINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' CFB sing 114 n n O5' H5' CFB sing 115 n n C5' C4' CFB sing 116 n n C5' "H5'1" CFB sing 117 n n C5' "H5'2" CFB sing 118 n n C4' O4' CFB sing 119 n n C4' C3' CFB sing 120 n n C4' H4' CFB sing 121 n n O4' C1' CFB sing 122 n n C3' O3' CFB sing 123 n n C3' C2' CFB sing 124 n n C3' H3' CFB sing 125 n n O3' H1 CFB sing 126 n n C2' F CFB sing 127 n n C2' C1' CFB sing 128 n n C2' H2' CFB sing 129 n n C1' N9 CFB sing 130 n n C1' H1' CFB sing 131 n n N9 C8 CFB sing 132 n y N9 C4 CFB sing 133 n y C8 N7 CFB doub 134 n y C8 H8 CFB sing 135 n n N7 C5 CFB sing 136 n y C5 C4 CFB doub 137 n y C5 C6 CFB sing 138 n y C4 N3 CFB sing 139 n y N3 C2 CFB doub 140 n y C2 CL CFB sing 141 n n C2 N1 CFB sing 142 n y N1 C6 CFB doub 143 n y C6 N6 CFB sing 144 n n N6 HN61 CFB sing 145 n n N6 HN62 CFB sing 146 n n # _atom_sites.entry_id 2A7Q _atom_sites.fract_transf_matrix[1][1] 0.012477 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012477 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010676 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 300 300 MG MG . C 3 ADP A 1 301 301 ADP ADP . D 4 CFB A 1 328 328 CFB CFB . E 5 HOH A 1 329 1 HOH HOH . E 5 HOH A 2 330 2 HOH HOH . E 5 HOH A 3 331 3 HOH HOH . E 5 HOH A 4 332 4 HOH HOH . E 5 HOH A 5 333 5 HOH HOH . E 5 HOH A 6 334 6 HOH HOH . E 5 HOH A 7 335 7 HOH HOH . E 5 HOH A 8 336 8 HOH HOH . E 5 HOH A 9 337 9 HOH HOH . E 5 HOH A 10 338 10 HOH HOH . E 5 HOH A 11 339 11 HOH HOH . E 5 HOH A 12 340 12 HOH HOH . E 5 HOH A 13 341 13 HOH HOH . E 5 HOH A 14 342 14 HOH HOH . E 5 HOH A 15 343 15 HOH HOH . E 5 HOH A 16 344 16 HOH HOH . E 5 HOH A 17 345 17 HOH HOH . E 5 HOH A 18 346 18 HOH HOH . E 5 HOH A 19 347 19 HOH HOH . E 5 HOH A 20 348 20 HOH HOH . E 5 HOH A 21 349 21 HOH HOH . E 5 HOH A 22 350 22 HOH HOH . E 5 HOH A 23 351 23 HOH HOH . E 5 HOH A 24 352 24 HOH HOH . E 5 HOH A 25 353 25 HOH HOH . E 5 HOH A 26 354 26 HOH HOH . E 5 HOH A 27 355 27 HOH HOH . E 5 HOH A 28 356 28 HOH HOH . E 5 HOH A 29 357 29 HOH HOH . E 5 HOH A 30 358 30 HOH HOH . E 5 HOH A 31 359 31 HOH HOH . E 5 HOH A 32 360 32 HOH HOH . E 5 HOH A 33 361 33 HOH HOH . E 5 HOH A 34 362 34 HOH HOH . E 5 HOH A 35 363 35 HOH HOH . E 5 HOH A 36 364 36 HOH HOH . E 5 HOH A 37 365 37 HOH HOH . E 5 HOH A 38 366 38 HOH HOH . E 5 HOH A 39 367 39 HOH HOH . E 5 HOH A 40 368 40 HOH HOH . E 5 HOH A 41 369 41 HOH HOH . E 5 HOH A 42 370 42 HOH HOH . E 5 HOH A 43 371 43 HOH HOH . E 5 HOH A 44 372 44 HOH HOH . E 5 HOH A 45 373 45 HOH HOH . E 5 HOH A 46 374 46 HOH HOH . E 5 HOH A 47 375 47 HOH HOH . E 5 HOH A 48 376 48 HOH HOH . E 5 HOH A 49 377 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' CFB . . . D 4 69.886 38.113 20.463 1 65.96 ? O5' CFB 328 A 1 HETATM 2 C C5' CFB . . . D 4 70.463 37.51 21.625 1 64.43 ? C5' CFB 328 A 1 HETATM 3 C C4' CFB . . . D 4 70.35 35.986 21.541 1 62.75 ? C4' CFB 328 A 1 HETATM 4 O O4' CFB . . . D 4 68.985 35.655 21.235 1 62.06 ? O4' CFB 328 A 1 HETATM 5 C C3' CFB . . . D 4 71.205 35.389 20.418 1 63.28 ? C3' CFB 328 A 1 HETATM 6 O O3' CFB . . . D 4 71.884 34.232 20.913 1 65.18 ? O3' CFB 328 A 1 HETATM 7 C C2' CFB . . . D 4 70.179 34.96 19.369 1 62.56 ? C2' CFB 328 A 1 HETATM 8 F F CFB . . . D 4 69.896 35.965 18.454 1 63.74 ? F CFB 328 A 1 HETATM 9 C C1' CFB . . . D 4 69.02 34.577 20.287 1 62.76 ? C1' CFB 328 A 1 HETATM 10 N N9 CFB . . . D 4 67.709 34.462 19.603 1 63.58 ? N9 CFB 328 A 1 HETATM 11 C C8 CFB . . . D 4 66.801 35.433 19.507 1 62.69 ? C8 CFB 328 A 1 HETATM 12 N N7 CFB . . . D 4 65.697 34.959 18.933 1 62.42 ? N7 CFB 328 A 1 HETATM 13 C C5 CFB . . . D 4 65.902 33.68 18.653 1 65.25 ? C5 CFB 328 A 1 HETATM 14 C C4 CFB . . . D 4 67.192 33.363 19.072 1 64.85 ? C4 CFB 328 A 1 HETATM 15 N N3 CFB . . . D 4 67.663 32.121 18.889 1 69 ? N3 CFB 328 A 1 HETATM 16 C C2 CFB . . . D 4 66.9 31.181 18.306 1 72.12 ? C2 CFB 328 A 1 HETATM 17 CL CL CFB . . . D 4 67.548 29.596 18.054 1 86.73 ? CL CFB 328 A 1 HETATM 18 N N1 CFB . . . D 4 65.655 31.457 17.903 1 70.5 ? N1 CFB 328 A 1 HETATM 19 C C6 CFB . . . D 4 65.131 32.684 18.061 1 67.55 ? C6 CFB 328 A 1 HETATM 20 N N6 CFB . . . D 4 63.888 32.938 17.669 1 68.36 ? N6 CFB 328 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #