data_2A7R # _model_server_result.job_id zqtRDQhUgvvyd_CvIB17HQ _model_server_result.datetime_utc '2025-03-04 22:05:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a7r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":500}' # _entry.id 2A7R # _exptl.entry_id 2A7R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2A7R _cell.length_a 110.56 _cell.length_b 110.56 _cell.length_c 209.75 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A7R _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 J N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 86 A CYS 68 1_555 A SG CYS 113 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 86 B CYS 68 1_555 B SG CYS 113 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 C SG CYS 86 C CYS 68 1_555 C SG CYS 113 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 D SG CYS 86 D CYS 68 1_555 D SG CYS 113 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 2A7R _atom_sites.fract_transf_matrix[1][1] 0.009045 _atom_sites.fract_transf_matrix[1][2] 0.005222 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010444 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004768 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 400 400 SO4 SO4 . F 2 SO4 A 1 401 401 SO4 SO4 . G 3 5GP A 1 500 500 5GP 5GP . H 2 SO4 B 1 1400 400 SO4 SO4 . I 2 SO4 B 1 1401 401 SO4 SO4 . J 3 5GP B 1 500 500 5GP 5GP . K 2 SO4 C 1 2400 400 SO4 SO4 . L 2 SO4 C 1 2401 401 SO4 SO4 . M 3 5GP C 1 500 500 5GP 5GP . N 2 SO4 D 1 3400 400 SO4 SO4 . O 2 SO4 D 1 3500 500 SO4 SO4 . P 4 HOH A 1 501 1 HOH HOH . P 4 HOH A 2 502 5 HOH HOH . P 4 HOH A 3 503 7 HOH HOH . Q 4 HOH B 1 1402 3 HOH HOH . Q 4 HOH B 2 1403 4 HOH HOH . Q 4 HOH B 3 1404 8 HOH HOH . Q 4 HOH B 4 1405 12 HOH HOH . R 4 HOH C 1 2402 2 HOH HOH . R 4 HOH C 2 2403 6 HOH HOH . R 4 HOH C 3 2404 9 HOH HOH . S 4 HOH D 1 3501 10 HOH HOH . S 4 HOH D 2 3502 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . G 3 61.055 8.077 52.737 1 78.03 ? P 5GP 500 A 1 HETATM 2 O O1P 5GP . . . G 3 62.25 8.617 52.05 1 77.54 ? O1P 5GP 500 A 1 HETATM 3 O O2P 5GP . . . G 3 60.614 6.639 52.163 1 78.12 ? O2P 5GP 500 A 1 HETATM 4 O O3P 5GP . . . G 3 59.774 9.032 52.549 1 79.93 ? O3P 5GP 500 A 1 HETATM 5 O O5' 5GP . . . G 3 61.238 7.892 54.326 1 81.7 ? O5' 5GP 500 A 1 HETATM 6 C C5' 5GP . . . G 3 62.438 7.344 54.88 1 83.34 ? C5' 5GP 500 A 1 HETATM 7 C C4' 5GP . . . G 3 62.244 7.018 56.364 1 83.88 ? C4' 5GP 500 A 1 HETATM 8 O O4' 5GP . . . G 3 61.218 6.034 56.56 1 85.1 ? O4' 5GP 500 A 1 HETATM 9 C C3' 5GP . . . G 3 63.455 6.325 56.987 1 84.65 ? C3' 5GP 500 A 1 HETATM 10 O O3' 5GP . . . G 3 64.482 7.282 57.257 1 82.89 ? O3' 5GP 500 A 1 HETATM 11 C C2' 5GP . . . G 3 62.832 5.865 58.306 1 84.87 ? C2' 5GP 500 A 1 HETATM 12 O O2' 5GP . . . G 3 62.892 6.909 59.282 1 86.12 ? O2' 5GP 500 A 1 HETATM 13 C C1' 5GP . . . G 3 61.372 5.601 57.924 1 84.79 ? C1' 5GP 500 A 1 HETATM 14 N N9 5GP . . . G 3 61.034 4.162 58.025 1 84.15 ? N9 5GP 500 A 1 HETATM 15 C C8 5GP . . . G 3 61.587 3.17 57.328 1 83.39 ? C8 5GP 500 A 1 HETATM 16 N N7 5GP . . . G 3 61.035 2.013 57.686 1 83.03 ? N7 5GP 500 A 1 HETATM 17 C C5 5GP . . . G 3 60.121 2.268 58.618 1 82.51 ? C5 5GP 500 A 1 HETATM 18 C C6 5GP . . . G 3 59.245 1.457 59.335 1 80.74 ? C6 5GP 500 A 1 HETATM 19 O O6 5GP . . . G 3 59.239 0.244 59.171 1 78.21 ? O6 5GP 500 A 1 HETATM 20 N N1 5GP . . . G 3 58.376 2.061 60.256 1 79.75 ? N1 5GP 500 A 1 HETATM 21 C C2 5GP . . . G 3 58.417 3.449 60.43 1 78.04 ? C2 5GP 500 A 1 HETATM 22 N N2 5GP . . . G 3 57.599 4.03 61.303 1 78.08 ? N2 5GP 500 A 1 HETATM 23 N N3 5GP . . . G 3 59.277 4.196 59.722 1 79.2 ? N3 5GP 500 A 1 HETATM 24 C C4 5GP . . . G 3 60.117 3.64 58.833 1 82.98 ? C4 5GP 500 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #