data_2A7R # _model_server_result.job_id 6RzF3KrZnWc5thZsiU11jA _model_server_result.datetime_utc '2024-11-15 08:32:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a7r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":500}' # _entry.id 2A7R # _exptl.entry_id 2A7R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2A7R _cell.length_a 110.56 _cell.length_b 110.56 _cell.length_c 209.75 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A7R _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 J N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 86 A CYS 68 1_555 A SG CYS 113 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 86 B CYS 68 1_555 B SG CYS 113 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 C SG CYS 86 C CYS 68 1_555 C SG CYS 113 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 D SG CYS 86 D CYS 68 1_555 D SG CYS 113 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 G O3' 5GP . A 5GP 500 1_555 A OD1 ASP 237 A ASP 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? covale ? covale2 G O2' 5GP . A 5GP 500 1_555 A OD2 ASP 237 A ASP 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? covale ? covale3 J O3' 5GP . B 5GP 500 1_555 B OD1 ASP 237 B ASP 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? covale ? covale4 J O2' 5GP . B 5GP 500 1_555 B OD2 ASP 237 B ASP 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? covale ? covale5 M O3' 5GP . C 5GP 500 1_555 C OD1 ASP 237 C ASP 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? covale ? covale6 M O2' 5GP . C 5GP 500 1_555 C OD2 ASP 237 C ASP 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2A7R _atom_sites.fract_transf_matrix[1][1] 0.009045 _atom_sites.fract_transf_matrix[1][2] 0.005222 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010444 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004768 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 400 400 SO4 SO4 . F 2 SO4 A 1 401 401 SO4 SO4 . G 3 5GP A 1 500 500 5GP 5GP . H 2 SO4 B 1 1400 400 SO4 SO4 . I 2 SO4 B 1 1401 401 SO4 SO4 . J 3 5GP B 1 500 500 5GP 5GP . K 2 SO4 C 1 2400 400 SO4 SO4 . L 2 SO4 C 1 2401 401 SO4 SO4 . M 3 5GP C 1 500 500 5GP 5GP . N 2 SO4 D 1 3400 400 SO4 SO4 . O 2 SO4 D 1 3500 500 SO4 SO4 . P 4 HOH A 1 501 1 HOH HOH . P 4 HOH A 2 502 5 HOH HOH . P 4 HOH A 3 503 7 HOH HOH . Q 4 HOH B 1 1402 3 HOH HOH . Q 4 HOH B 2 1403 4 HOH HOH . Q 4 HOH B 3 1404 8 HOH HOH . Q 4 HOH B 4 1405 12 HOH HOH . R 4 HOH C 1 2402 2 HOH HOH . R 4 HOH C 2 2403 6 HOH HOH . R 4 HOH C 3 2404 9 HOH HOH . S 4 HOH D 1 3501 10 HOH HOH . S 4 HOH D 2 3502 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . J 3 21.539 18.854 37.241 1 58.8 ? P 5GP 500 B 1 HETATM 2 O O1P 5GP . . . J 3 20.361 18.364 37.99 1 60.75 ? O1P 5GP 500 B 1 HETATM 3 O O2P 5GP . . . J 3 21.976 17.858 36.056 1 63.96 ? O2P 5GP 500 B 1 HETATM 4 O O3P 5GP . . . J 3 22.835 18.983 38.186 1 63.21 ? O3P 5GP 500 B 1 HETATM 5 O O5' 5GP . . . J 3 21.324 20.294 36.554 1 65.54 ? O5' 5GP 500 B 1 HETATM 6 C C5' 5GP . . . J 3 20.199 20.526 35.703 1 71.19 ? C5' 5GP 500 B 1 HETATM 7 C C4' 5GP . . . J 3 20.248 21.927 35.09 1 75.98 ? C4' 5GP 500 B 1 HETATM 8 O O4' 5GP . . . J 3 21.385 22.117 34.233 1 77.84 ? O4' 5GP 500 B 1 HETATM 9 C C3' 5GP . . . J 3 19.083 22.161 34.129 1 78.76 ? C3' 5GP 500 B 1 HETATM 10 O O3' 5GP . . . J 3 17.883 22.383 34.874 1 77.67 ? O3' 5GP 500 B 1 HETATM 11 C C2' 5GP . . . J 3 19.562 23.48 33.524 1 80.53 ? C2' 5GP 500 B 1 HETATM 12 O O2' 5GP . . . J 3 19.313 24.563 34.425 1 80.97 ? O2' 5GP 500 B 1 HETATM 13 C C1' 5GP . . . J 3 21.071 23.248 33.396 1 80.39 ? C1' 5GP 500 B 1 HETATM 14 N N9 5GP . . . J 3 21.45 22.937 31.997 1 81.49 ? N9 5GP 500 B 1 HETATM 15 C C8 5GP . . . J 3 20.952 21.967 31.233 1 82.99 ? C8 5GP 500 B 1 HETATM 16 N N7 5GP . . . J 3 21.535 21.994 30.037 1 82.38 ? N7 5GP 500 B 1 HETATM 17 C C5 5GP . . . J 3 22.414 22.992 30.033 1 84.59 ? C5 5GP 500 B 1 HETATM 18 C C6 5GP . . . J 3 23.291 23.486 29.077 1 85.85 ? C6 5GP 500 B 1 HETATM 19 O O6 5GP . . . J 3 23.357 22.971 27.962 1 87.02 ? O6 5GP 500 B 1 HETATM 20 N N1 5GP . . . J 3 24.099 24.583 29.403 1 86.26 ? N1 5GP 500 B 1 HETATM 21 C C2 5GP . . . J 3 24.003 25.15 30.68 1 83.95 ? C2 5GP 500 B 1 HETATM 22 N N2 5GP . . . J 3 24.76 26.194 31.004 1 84.33 ? N2 5GP 500 B 1 HETATM 23 N N3 5GP . . . J 3 23.144 24.643 31.578 1 82.66 ? N3 5GP 500 B 1 HETATM 24 C C4 5GP . . . J 3 22.361 23.596 31.288 1 82.43 ? C4 5GP 500 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 443 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #