data_2A7R # _model_server_result.job_id IZoG3cCXYHfZX9e38z5AwA _model_server_result.datetime_utc '2024-11-15 08:55:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a7r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":500}' # _entry.id 2A7R # _exptl.entry_id 2A7R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2A7R _cell.length_a 110.56 _cell.length_b 110.56 _cell.length_c 209.75 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A7R _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 J N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 86 A CYS 68 1_555 A SG CYS 113 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 86 B CYS 68 1_555 B SG CYS 113 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 C SG CYS 86 C CYS 68 1_555 C SG CYS 113 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 D SG CYS 86 D CYS 68 1_555 D SG CYS 113 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 G O3' 5GP . A 5GP 500 1_555 A OD1 ASP 237 A ASP 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? covale ? covale2 G O2' 5GP . A 5GP 500 1_555 A OD2 ASP 237 A ASP 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? covale ? covale3 J O3' 5GP . B 5GP 500 1_555 B OD1 ASP 237 B ASP 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? covale ? covale4 J O2' 5GP . B 5GP 500 1_555 B OD2 ASP 237 B ASP 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? covale ? covale5 M O3' 5GP . C 5GP 500 1_555 C OD1 ASP 237 C ASP 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? covale ? covale6 M O2' 5GP . C 5GP 500 1_555 C OD2 ASP 237 C ASP 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2A7R _atom_sites.fract_transf_matrix[1][1] 0.009045 _atom_sites.fract_transf_matrix[1][2] 0.005222 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010444 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004768 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 400 400 SO4 SO4 . F 2 SO4 A 1 401 401 SO4 SO4 . G 3 5GP A 1 500 500 5GP 5GP . H 2 SO4 B 1 1400 400 SO4 SO4 . I 2 SO4 B 1 1401 401 SO4 SO4 . J 3 5GP B 1 500 500 5GP 5GP . K 2 SO4 C 1 2400 400 SO4 SO4 . L 2 SO4 C 1 2401 401 SO4 SO4 . M 3 5GP C 1 500 500 5GP 5GP . N 2 SO4 D 1 3400 400 SO4 SO4 . O 2 SO4 D 1 3500 500 SO4 SO4 . P 4 HOH A 1 501 1 HOH HOH . P 4 HOH A 2 502 5 HOH HOH . P 4 HOH A 3 503 7 HOH HOH . Q 4 HOH B 1 1402 3 HOH HOH . Q 4 HOH B 2 1403 4 HOH HOH . Q 4 HOH B 3 1404 8 HOH HOH . Q 4 HOH B 4 1405 12 HOH HOH . R 4 HOH C 1 2402 2 HOH HOH . R 4 HOH C 2 2403 6 HOH HOH . R 4 HOH C 3 2404 9 HOH HOH . S 4 HOH D 1 3501 10 HOH HOH . S 4 HOH D 2 3502 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . M 3 50.589 25.657 29.413 1 86.06 ? P 5GP 500 C 1 HETATM 2 O O1P 5GP . . . M 3 49.654 26.402 28.541 1 88.67 ? O1P 5GP 500 C 1 HETATM 3 O O2P 5GP . . . M 3 51.027 24.247 28.774 1 86.75 ? O2P 5GP 500 C 1 HETATM 4 O O3P 5GP . . . M 3 49.935 25.313 30.843 1 87.55 ? O3P 5GP 500 C 1 HETATM 5 O O5' 5GP . . . M 3 51.953 26.448 29.73 1 88.39 ? O5' 5GP 500 C 1 HETATM 6 C C5' 5GP . . . M 3 52.785 26.924 28.669 1 89.79 ? C5' 5GP 500 C 1 HETATM 7 C C4' 5GP . . . M 3 54.146 27.344 29.227 1 91.34 ? C4' 5GP 500 C 1 HETATM 8 O O4' 5GP . . . M 3 54.866 26.231 29.776 1 92.64 ? O4' 5GP 500 C 1 HETATM 9 C C3' 5GP . . . M 3 55.12 27.828 28.155 1 92.5 ? C3' 5GP 500 C 1 HETATM 10 O O3' 5GP . . . M 3 54.751 29.139 27.714 1 91.28 ? O3' 5GP 500 C 1 HETATM 11 C C2' 5GP . . . M 3 56.378 27.905 29.02 1 93.17 ? C2' 5GP 500 C 1 HETATM 12 O O2' 5GP . . . M 3 56.388 29.118 29.78 1 93 ? O2' 5GP 500 C 1 HETATM 13 C C1' 5GP . . . M 3 56.209 26.713 29.968 1 93.31 ? C1' 5GP 500 C 1 HETATM 14 N N9 5GP . . . M 3 57.168 25.622 29.68 1 93.13 ? N9 5GP 500 C 1 HETATM 15 C C8 5GP . . . M 3 57.223 24.89 28.569 1 93.52 ? C8 5GP 500 C 1 HETATM 16 N N7 5GP . . . M 3 58.193 23.986 28.68 1 94.2 ? N7 5GP 500 C 1 HETATM 17 C C5 5GP . . . M 3 58.764 24.139 29.87 1 93.64 ? C5 5GP 500 C 1 HETATM 18 C C6 5GP . . . M 3 59.803 23.479 30.519 1 92.86 ? C6 5GP 500 C 1 HETATM 19 O O6 5GP . . . M 3 60.38 22.538 29.982 1 91.05 ? O6 5GP 500 C 1 HETATM 20 N N1 5GP . . . M 3 60.165 23.895 31.808 1 92.36 ? N1 5GP 500 C 1 HETATM 21 C C2 5GP . . . M 3 59.473 24.957 32.403 1 92.1 ? C2 5GP 500 C 1 HETATM 22 N N2 5GP . . . M 3 59.802 25.361 33.626 1 91.65 ? N2 5GP 500 C 1 HETATM 23 N N3 5GP . . . M 3 58.474 25.569 31.743 1 91.86 ? N3 5GP 500 C 1 HETATM 24 C C4 5GP . . . M 3 58.113 25.187 30.512 1 92.93 ? C4 5GP 500 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #