data_2A87
#
_model_server_result.job_id            6W7ZocZ65xEIRMeEvnvStQ 
_model_server_result.datetime_utc      '2025-01-03 05:46:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2a87 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":348}' 
#
_entry.id    2A87 
#
_exptl.entry_id    2A87 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2A87 
_cell.length_a            107.4 
_cell.length_b            107.4 
_cell.length_c            118.2 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2A87 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 145 A CYS 145 1_555 A SG CYS 148 A CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 B SG CYS 145 B CYS 145 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc1 A ND1 HIS 250 A HIS 250 1_555 C MG MG . A MG 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? 
metalc ? metalc2 C MG MG . A MG 336 1_555 E O4D NAP . A NAP 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.033 ? 
metalc ? metalc3 B ND1 HIS 250 B HIS 250 1_555 F MG MG . B MG 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? 
metalc ? metalc4 F MG MG . B MG 336 1_555 H N1N NAP . B NAP 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? 
metalc ? metalc5 F MG MG . B MG 336 1_555 H O4D NAP . B NAP 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.643 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     2A87 
_atom_sites.fract_transf_matrix[1][1]    0.009311 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009311 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008472 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 336 73 MG MG . 
D 3 FAD A 1 348 448 FAD FAD . 
E 4 NAP A 1 381 481 NAP NAP . 
F 2 MG B 1 336 74 MG MG . 
G 3 FAD B 1 448 448 FAD FAD . 
H 4 NAP B 1 481 481 NAP NAP . 
I 5 HOH A 1 382 1 HOH HOH . 
I 5 HOH A 2 383 8 HOH HOH . 
I 5 HOH A 3 384 9 HOH HOH . 
I 5 HOH A 4 385 10 HOH HOH . 
I 5 HOH A 5 386 11 HOH HOH . 
I 5 HOH A 6 387 12 HOH HOH . 
I 5 HOH A 7 388 13 HOH HOH . 
I 5 HOH A 8 389 16 HOH HOH . 
I 5 HOH A 9 390 18 HOH HOH . 
I 5 HOH A 10 391 19 HOH HOH . 
J 5 HOH B 1 482 2 HOH HOH . 
J 5 HOH B 2 483 5 HOH HOH . 
J 5 HOH B 3 484 7 HOH HOH . 
J 5 HOH B 4 485 14 HOH HOH . 
J 5 HOH B 5 486 15 HOH HOH . 
J 5 HOH B 6 487 17 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . D 3 -2.839 29.434 32.856 1 74.97 ? PA FAD 348 A 1 
HETATM 2 O O1A FAD . . . D 3 -1.592 29.617 33.638 1 60.78 ? O1A FAD 348 A 1 
HETATM 3 O O2A FAD . . . D 3 -4.025 28.815 33.497 1 71.14 ? O2A FAD 348 A 1 
HETATM 4 O O5B FAD . . . D 3 -3.344 30.849 32.428 1 66.01 ? O5B FAD 348 A 1 
HETATM 5 C C5B FAD . . . D 3 -4.375 30.844 31.482 1 72.53 ? C5B FAD 348 A 1 
HETATM 6 C C4B FAD . . . D 3 -5.548 31.676 31.939 1 69.19 ? C4B FAD 348 A 1 
HETATM 7 O O4B FAD . . . D 3 -6.456 32.118 31.053 1 77.31 ? O4B FAD 348 A 1 
HETATM 8 C C3B FAD . . . D 3 -5.874 32.124 33.358 1 84.1 ? C3B FAD 348 A 1 
HETATM 9 O O3B FAD . . . D 3 -5.025 33.235 33.726 1 79.25 ? O3B FAD 348 A 1 
HETATM 10 C C2B FAD . . . D 3 -7.351 32.547 33.219 1 71.64 ? C2B FAD 348 A 1 
HETATM 11 O O2B FAD . . . D 3 -7.629 33.723 33.993 1 82.45 ? O2B FAD 348 A 1 
HETATM 12 C C1B FAD . . . D 3 -7.487 32.889 31.73 1 72.02 ? C1B FAD 348 A 1 
HETATM 13 N N9A FAD . . . D 3 -8.759 32.486 31.042 1 75.28 ? N9A FAD 348 A 1 
HETATM 14 C C8A FAD . . . D 3 -9.186 31.253 30.762 1 61.26 ? C8A FAD 348 A 1 
HETATM 15 N N7A FAD . . . D 3 -10.357 31.331 30.12 1 64.27 ? N7A FAD 348 A 1 
HETATM 16 C C5A FAD . . . D 3 -10.668 32.614 29.982 1 52.19 ? C5A FAD 348 A 1 
HETATM 17 C C6A FAD . . . D 3 -11.743 33.29 29.431 1 60.55 ? C6A FAD 348 A 1 
HETATM 18 N N6A FAD . . . D 3 -12.757 32.652 28.864 1 75.62 ? N6A FAD 348 A 1 
HETATM 19 N N1A FAD . . . D 3 -11.744 34.673 29.487 1 58.96 ? N1A FAD 348 A 1 
HETATM 20 C C2A FAD . . . D 3 -10.683 35.348 30.069 1 62.36 ? C2A FAD 348 A 1 
HETATM 21 N N3A FAD . . . D 3 -9.671 34.685 30.588 1 56.07 ? N3A FAD 348 A 1 
HETATM 22 C C4A FAD . . . D 3 -9.647 33.346 30.564 1 63.71 ? C4A FAD 348 A 1 
HETATM 23 N N1 FAD . . . D 3 6.491 26.297 35.78 1 79.29 ? N1 FAD 348 A 1 
HETATM 24 C C2 FAD . . . D 3 7.857 26.573 35.464 1 90.03 ? C2 FAD 348 A 1 
HETATM 25 O O2 FAD . . . D 3 8.264 26.739 34.31 1 79.79 ? O2 FAD 348 A 1 
HETATM 26 N N3 FAD . . . D 3 8.774 26.658 36.497 1 106.27 ? N3 FAD 348 A 1 
HETATM 27 C C4 FAD . . . D 3 8.331 26.484 37.815 1 107.3 ? C4 FAD 348 A 1 
HETATM 28 O O4 FAD . . . D 3 9.172 26.57 38.707 1 91.3 ? O4 FAD 348 A 1 
HETATM 29 C C4X FAD . . . D 3 6.985 26.211 38.114 1 88.02 ? C4X FAD 348 A 1 
HETATM 30 N N5 FAD . . . D 3 6.577 26.049 39.441 1 78.06 ? N5 FAD 348 A 1 
HETATM 31 C C5X FAD . . . D 3 5.217 26.049 39.752 1 83.53 ? C5X FAD 348 A 1 
HETATM 32 C C6 FAD . . . D 3 4.824 26.121 41.084 1 100.01 ? C6 FAD 348 A 1 
HETATM 33 C C7 FAD . . . D 3 3.469 26.103 41.437 1 111.56 ? C7 FAD 348 A 1 
HETATM 34 C C7M FAD . . . D 3 3.095 26.191 42.936 1 106.91 ? C7M FAD 348 A 1 
HETATM 35 C C8 FAD . . . D 3 2.486 26.011 40.432 1 97.95 ? C8 FAD 348 A 1 
HETATM 36 C C8M FAD . . . D 3 0.967 25.984 40.734 1 72.97 ? C8M FAD 348 A 1 
HETATM 37 C C9 FAD . . . D 3 2.891 25.93 39.102 1 106.09 ? C9 FAD 348 A 1 
HETATM 38 C C9A FAD . . . D 3 4.25 25.95 38.749 1 93.3 ? C9A FAD 348 A 1 
HETATM 39 N N10 FAD . . . D 3 4.649 25.864 37.395 1 89.53 ? N10 FAD 348 A 1 
HETATM 40 C C10 FAD . . . D 3 6.039 26.112 37.092 1 79.32 ? C10 FAD 348 A 1 
HETATM 41 C C1' FAD . . . D 3 3.585 25.524 36.353 1 94.57 ? C1' FAD 348 A 1 
HETATM 42 C C2' FAD . . . D 3 2.805 26.723 35.702 1 90.12 ? C2' FAD 348 A 1 
HETATM 43 O O2' FAD . . . D 3 2.07 27.446 36.684 1 63.18 ? O2' FAD 348 A 1 
HETATM 44 C C3' FAD . . . D 3 1.801 26.352 34.567 1 79.47 ? C3' FAD 348 A 1 
HETATM 45 O O3' FAD . . . D 3 2.372 25.437 33.626 1 80.69 ? O3' FAD 348 A 1 
HETATM 46 C C4' FAD . . . D 3 1.326 27.624 33.818 1 78.39 ? C4' FAD 348 A 1 
HETATM 47 O O4' FAD . . . D 3 0.549 28.444 34.704 1 72.87 ? O4' FAD 348 A 1 
HETATM 48 C C5' FAD . . . D 3 0.519 27.35 32.518 1 70.19 ? C5' FAD 348 A 1 
HETATM 49 O O5' FAD . . . D 3 0.012 28.582 31.923 1 64.26 ? O5' FAD 348 A 1 
HETATM 50 P P FAD . . . D 3 -1.081 28.63 30.732 1 48.2 ? P FAD 348 A 1 
HETATM 51 O O1P FAD . . . D 3 -0.95 29.93 30.029 1 72.97 ? O1P FAD 348 A 1 
HETATM 52 O O2P FAD . . . D 3 -0.955 27.367 30.004 1 38.63 ? O2P FAD 348 A 1 
HETATM 53 O O3P FAD . . . D 3 -2.525 28.688 31.419 1 40.98 ? O3P FAD 348 A 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           53 
#