data_2A87
#
_model_server_result.job_id            KlBvOOfxUtk3x0tiJF0jeA 
_model_server_result.datetime_utc      '2025-01-03 05:54:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2a87 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":448}' 
#
_entry.id    2A87 
#
_exptl.entry_id    2A87 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2A87 
_cell.length_a            107.4 
_cell.length_b            107.4 
_cell.length_c            118.2 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2A87 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 145 A CYS 145 1_555 A SG CYS 148 A CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 B SG CYS 145 B CYS 145 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc1 A ND1 HIS 250 A HIS 250 1_555 C MG MG . A MG 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? 
metalc ? metalc2 C MG MG . A MG 336 1_555 E O4D NAP . A NAP 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.033 ? 
metalc ? metalc3 B ND1 HIS 250 B HIS 250 1_555 F MG MG . B MG 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? 
metalc ? metalc4 F MG MG . B MG 336 1_555 H N1N NAP . B NAP 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? 
metalc ? metalc5 F MG MG . B MG 336 1_555 H O4D NAP . B NAP 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.643 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     2A87 
_atom_sites.fract_transf_matrix[1][1]    0.009311 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009311 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008472 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 336 73 MG MG . 
D 3 FAD A 1 348 448 FAD FAD . 
E 4 NAP A 1 381 481 NAP NAP . 
F 2 MG B 1 336 74 MG MG . 
G 3 FAD B 1 448 448 FAD FAD . 
H 4 NAP B 1 481 481 NAP NAP . 
I 5 HOH A 1 382 1 HOH HOH . 
I 5 HOH A 2 383 8 HOH HOH . 
I 5 HOH A 3 384 9 HOH HOH . 
I 5 HOH A 4 385 10 HOH HOH . 
I 5 HOH A 5 386 11 HOH HOH . 
I 5 HOH A 6 387 12 HOH HOH . 
I 5 HOH A 7 388 13 HOH HOH . 
I 5 HOH A 8 389 16 HOH HOH . 
I 5 HOH A 9 390 18 HOH HOH . 
I 5 HOH A 10 391 19 HOH HOH . 
J 5 HOH B 1 482 2 HOH HOH . 
J 5 HOH B 2 483 5 HOH HOH . 
J 5 HOH B 3 484 7 HOH HOH . 
J 5 HOH B 4 485 14 HOH HOH . 
J 5 HOH B 5 486 15 HOH HOH . 
J 5 HOH B 6 487 17 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . G 3 22.176 26.683 20.326 1 119.93 ? PA FAD 448 B 1 
HETATM 2 O O1A FAD . . . G 3 22.019 28.008 20.974 1 115.35 ? O1A FAD 448 B 1 
HETATM 3 O O2A FAD . . . G 3 21.816 26.525 18.886 1 115.12 ? O2A FAD 448 B 1 
HETATM 4 O O5B FAD . . . G 3 23.75 26.272 20.555 1 119.41 ? O5B FAD 448 B 1 
HETATM 5 C C5B FAD . . . G 3 24.219 26.012 21.892 1 113.37 ? C5B FAD 448 B 1 
HETATM 6 C C4B FAD . . . G 3 25.579 25.326 21.923 1 109.97 ? C4B FAD 448 B 1 
HETATM 7 O O4B FAD . . . G 3 25.745 24.049 22.416 1 104.78 ? O4B FAD 448 B 1 
HETATM 8 C C3B FAD . . . G 3 26.886 25.951 21.398 1 109.33 ? C3B FAD 448 B 1 
HETATM 9 O O3B FAD . . . G 3 27.208 27.205 22.049 1 53.32 ? O3B FAD 448 B 1 
HETATM 10 C C2B FAD . . . G 3 27.932 24.838 21.669 1 117.93 ? C2B FAD 448 B 1 
HETATM 11 O O2B FAD . . . G 3 28.977 25.289 22.551 1 109.15 ? O2B FAD 448 B 1 
HETATM 12 C C1B FAD . . . G 3 27.158 23.647 22.331 1 111.54 ? C1B FAD 448 B 1 
HETATM 13 N N9A FAD . . . G 3 27.475 22.32 21.633 1 115.78 ? N9A FAD 448 B 1 
HETATM 14 C C8A FAD . . . G 3 27.179 21.983 20.372 1 106.89 ? C8A FAD 448 B 1 
HETATM 15 N N7A FAD . . . G 3 27.634 20.752 20.122 1 103.52 ? N7A FAD 448 B 1 
HETATM 16 C C5A FAD . . . G 3 28.231 20.296 21.218 1 94.08 ? C5A FAD 448 B 1 
HETATM 17 C C6A FAD . . . G 3 28.876 19.104 21.524 1 97.67 ? C6A FAD 448 B 1 
HETATM 18 N N6A FAD . . . G 3 28.973 18.144 20.61 1 116.49 ? N6A FAD 448 B 1 
HETATM 19 N N1A FAD . . . G 3 29.41 18.935 22.81 1 100.47 ? N1A FAD 448 B 1 
HETATM 20 C C2A FAD . . . G 3 29.281 19.969 23.743 1 107.15 ? C2A FAD 448 B 1 
HETATM 21 N N3A FAD . . . G 3 28.661 21.095 23.415 1 119.57 ? N3A FAD 448 B 1 
HETATM 22 C C4A FAD . . . G 3 28.135 21.29 22.184 1 117.61 ? C4A FAD 448 B 1 
HETATM 23 N N1 FAD . . . G 3 15.436 33.901 20.854 1 83.05 ? N1 FAD 448 B 1 
HETATM 24 C C2 FAD . . . G 3 14.427 34.521 21.658 1 112.62 ? C2 FAD 448 B 1 
HETATM 25 O O2 FAD . . . G 3 13.577 33.881 22.299 1 105.37 ? O2 FAD 448 B 1 
HETATM 26 N N3 FAD . . . G 3 14.403 35.913 21.732 1 117.85 ? N3 FAD 448 B 1 
HETATM 27 C C4 FAD . . . G 3 15.354 36.682 21.022 1 109.94 ? C4 FAD 448 B 1 
HETATM 28 O O4 FAD . . . G 3 15.342 37.914 21.086 1 106.3 ? O4 FAD 448 B 1 
HETATM 29 C C4X FAD . . . G 3 16.326 36.062 20.239 1 108.3 ? C4X FAD 448 B 1 
HETATM 30 N N5 FAD . . . G 3 17.265 36.863 19.562 1 112.75 ? N5 FAD 448 B 1 
HETATM 31 C C5X FAD . . . G 3 18.333 36.272 18.856 1 120 ? C5X FAD 448 B 1 
HETATM 32 C C6 FAD . . . G 3 19.301 37.098 18.274 1 120 ? C6 FAD 448 B 1 
HETATM 33 C C7 FAD . . . G 3 20.371 36.559 17.552 1 120 ? C7 FAD 448 B 1 
HETATM 34 C C7M FAD . . . G 3 21.435 37.489 16.928 1 120 ? C7M FAD 448 B 1 
HETATM 35 C C8 FAD . . . G 3 20.472 35.174 17.412 1 119.12 ? C8 FAD 448 B 1 
HETATM 36 C C8M FAD . . . G 3 21.656 34.587 16.625 1 107.09 ? C8M FAD 448 B 1 
HETATM 37 C C9 FAD . . . G 3 19.501 34.341 17.991 1 120 ? C9 FAD 448 B 1 
HETATM 38 C C9A FAD . . . G 3 18.423 34.877 18.725 1 118.8 ? C9A FAD 448 B 1 
HETATM 39 N N10 FAD . . . G 3 17.408 34.057 19.32 1 107.4 ? N10 FAD 448 B 1 
HETATM 40 C C10 FAD . . . G 3 16.392 34.664 20.144 1 99.97 ? C10 FAD 448 B 1 
HETATM 41 C C1' FAD . . . G 3 17.397 32.592 19.027 1 76.42 ? C1' FAD 448 B 1 
HETATM 42 C C2' FAD . . . G 3 18.029 31.77 20.147 1 96.43 ? C2' FAD 448 B 1 
HETATM 43 O O2' FAD . . . G 3 19.345 32.284 20.355 1 117.81 ? O2' FAD 448 B 1 
HETATM 44 C C3' FAD . . . G 3 18.12 30.25 19.829 1 104.83 ? C3' FAD 448 B 1 
HETATM 45 O O3' FAD . . . G 3 16.811 29.621 19.738 1 60.04 ? O3' FAD 448 B 1 
HETATM 46 C C4' FAD . . . G 3 19.007 29.506 20.868 1 98.39 ? C4' FAD 448 B 1 
HETATM 47 O O4' FAD . . . G 3 20.361 30.032 20.9 1 61.48 ? O4' FAD 448 B 1 
HETATM 48 C C5' FAD . . . G 3 19.015 27.988 20.609 1 86.72 ? C5' FAD 448 B 1 
HETATM 49 O O5' FAD . . . G 3 19.686 27.276 21.662 1 71.94 ? O5' FAD 448 B 1 
HETATM 50 P P FAD . . . G 3 19.872 25.716 21.606 1 52.5 ? P FAD 448 B 1 
HETATM 51 O O1P FAD . . . G 3 19.755 25.137 22.965 1 54.21 ? O1P FAD 448 B 1 
HETATM 52 O O2P FAD . . . G 3 19.006 25.254 20.512 1 52.85 ? O2P FAD 448 B 1 
HETATM 53 O O3P FAD . . . G 3 21.386 25.538 21.183 1 64.22 ? O3P FAD 448 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           53 
#