data_2A88 # _model_server_result.job_id 8LD3lQz2nPXRjfIVmwSGWw _model_server_result.datetime_utc '2024-11-05 08:32:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a88 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2002}' # _entry.id 2A88 # _exptl.entry_id 2A88 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.5 _cell.angle_gamma 90 _cell.entry_id 2A88 _cell.length_a 119.818 _cell.length_b 44.983 _cell.length_c 82.136 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A88 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -47.696618 0 66.868192 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 2A88 _atom_sites.fract_transf_matrix[1][1] 0.00835 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00595 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02223 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01495 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1001 1001 SO4 SO4 . C 3 GOL A 1 2001 2001 GOL GOL . D 3 GOL A 1 2002 2002 GOL GOL . E 4 HOH A 1 2003 1 HOH HOH . E 4 HOH A 2 2004 2 HOH HOH . E 4 HOH A 3 2005 3 HOH HOH . E 4 HOH A 4 2006 4 HOH HOH . E 4 HOH A 5 2007 5 HOH HOH . E 4 HOH A 6 2008 6 HOH HOH . E 4 HOH A 7 2009 7 HOH HOH . E 4 HOH A 8 2010 8 HOH HOH . E 4 HOH A 9 2011 9 HOH HOH . E 4 HOH A 10 2012 10 HOH HOH . E 4 HOH A 11 2013 11 HOH HOH . E 4 HOH A 12 2014 12 HOH HOH . E 4 HOH A 13 2015 13 HOH HOH . E 4 HOH A 14 2016 14 HOH HOH . E 4 HOH A 15 2017 15 HOH HOH . E 4 HOH A 16 2018 16 HOH HOH . E 4 HOH A 17 2019 17 HOH HOH . E 4 HOH A 18 2020 18 HOH HOH . E 4 HOH A 19 2021 19 HOH HOH . E 4 HOH A 20 2022 20 HOH HOH . E 4 HOH A 21 2023 21 HOH HOH . E 4 HOH A 22 2024 22 HOH HOH . E 4 HOH A 23 2025 23 HOH HOH . E 4 HOH A 24 2026 24 HOH HOH . E 4 HOH A 25 2027 25 HOH HOH . E 4 HOH A 26 2028 26 HOH HOH . E 4 HOH A 27 2029 27 HOH HOH . E 4 HOH A 28 2030 28 HOH HOH . E 4 HOH A 29 2031 29 HOH HOH . E 4 HOH A 30 2032 30 HOH HOH . E 4 HOH A 31 2033 31 HOH HOH . E 4 HOH A 32 2034 32 HOH HOH . E 4 HOH A 33 2035 33 HOH HOH . E 4 HOH A 34 2036 34 HOH HOH . E 4 HOH A 35 2037 35 HOH HOH . E 4 HOH A 36 2038 36 HOH HOH . E 4 HOH A 37 2039 37 HOH HOH . E 4 HOH A 38 2040 38 HOH HOH . E 4 HOH A 39 2041 39 HOH HOH . E 4 HOH A 40 2042 40 HOH HOH . E 4 HOH A 41 2043 41 HOH HOH . E 4 HOH A 42 2044 42 HOH HOH . E 4 HOH A 43 2045 43 HOH HOH . E 4 HOH A 44 2046 44 HOH HOH . E 4 HOH A 45 2047 45 HOH HOH . E 4 HOH A 46 2048 46 HOH HOH . E 4 HOH A 47 2049 47 HOH HOH . E 4 HOH A 48 2050 48 HOH HOH . E 4 HOH A 49 2051 49 HOH HOH . E 4 HOH A 50 2052 50 HOH HOH . E 4 HOH A 51 2053 51 HOH HOH . E 4 HOH A 52 2054 52 HOH HOH . E 4 HOH A 53 2055 53 HOH HOH . E 4 HOH A 54 2056 54 HOH HOH . E 4 HOH A 55 2057 55 HOH HOH . E 4 HOH A 56 2058 56 HOH HOH . E 4 HOH A 57 2059 57 HOH HOH . E 4 HOH A 58 2060 58 HOH HOH . E 4 HOH A 59 2061 59 HOH HOH . E 4 HOH A 60 2062 60 HOH HOH . E 4 HOH A 61 2063 61 HOH HOH . E 4 HOH A 62 2064 62 HOH HOH . E 4 HOH A 63 2065 63 HOH HOH . E 4 HOH A 64 2066 64 HOH HOH . E 4 HOH A 65 2067 65 HOH HOH . E 4 HOH A 66 2068 66 HOH HOH . E 4 HOH A 67 2069 67 HOH HOH . E 4 HOH A 68 2070 68 HOH HOH . E 4 HOH A 69 2071 69 HOH HOH . E 4 HOH A 70 2072 70 HOH HOH . E 4 HOH A 71 2073 71 HOH HOH . E 4 HOH A 72 2074 72 HOH HOH . E 4 HOH A 73 2075 73 HOH HOH . E 4 HOH A 74 2076 74 HOH HOH . E 4 HOH A 75 2077 75 HOH HOH . E 4 HOH A 76 2078 76 HOH HOH . E 4 HOH A 77 2079 77 HOH HOH . E 4 HOH A 78 2080 78 HOH HOH . E 4 HOH A 79 2081 79 HOH HOH . E 4 HOH A 80 2082 80 HOH HOH . E 4 HOH A 81 2083 81 HOH HOH . E 4 HOH A 82 2084 82 HOH HOH . E 4 HOH A 83 2085 83 HOH HOH . E 4 HOH A 84 2086 84 HOH HOH . E 4 HOH A 85 2087 85 HOH HOH . E 4 HOH A 86 2088 86 HOH HOH . E 4 HOH A 87 2089 87 HOH HOH . E 4 HOH A 88 2090 88 HOH HOH . E 4 HOH A 89 2091 89 HOH HOH . E 4 HOH A 90 2092 90 HOH HOH . E 4 HOH A 91 2093 91 HOH HOH . E 4 HOH A 92 2094 92 HOH HOH . E 4 HOH A 93 2095 93 HOH HOH . E 4 HOH A 94 2096 94 HOH HOH . E 4 HOH A 95 2097 95 HOH HOH . E 4 HOH A 96 2098 96 HOH HOH . E 4 HOH A 97 2099 97 HOH HOH . E 4 HOH A 98 2100 98 HOH HOH . E 4 HOH A 99 2101 99 HOH HOH . E 4 HOH A 100 2102 100 HOH HOH . E 4 HOH A 101 2103 101 HOH HOH . E 4 HOH A 102 2104 102 HOH HOH . E 4 HOH A 103 2105 103 HOH HOH . E 4 HOH A 104 2106 104 HOH HOH . E 4 HOH A 105 2107 105 HOH HOH . E 4 HOH A 106 2108 106 HOH HOH . E 4 HOH A 107 2109 107 HOH HOH . E 4 HOH A 108 2110 108 HOH HOH . E 4 HOH A 109 2111 109 HOH HOH . E 4 HOH A 110 2112 110 HOH HOH . E 4 HOH A 111 2113 111 HOH HOH . E 4 HOH A 112 2114 112 HOH HOH . E 4 HOH A 113 2115 113 HOH HOH . E 4 HOH A 114 2116 114 HOH HOH . E 4 HOH A 115 2117 115 HOH HOH . E 4 HOH A 116 2118 116 HOH HOH . E 4 HOH A 117 2119 117 HOH HOH . E 4 HOH A 118 2120 118 HOH HOH . E 4 HOH A 119 2121 119 HOH HOH . E 4 HOH A 120 2122 120 HOH HOH . E 4 HOH A 121 2123 121 HOH HOH . E 4 HOH A 122 2124 122 HOH HOH . E 4 HOH A 123 2125 123 HOH HOH . E 4 HOH A 124 2126 124 HOH HOH . E 4 HOH A 125 2127 125 HOH HOH . E 4 HOH A 126 2128 126 HOH HOH . E 4 HOH A 127 2129 127 HOH HOH . E 4 HOH A 128 2130 128 HOH HOH . E 4 HOH A 129 2131 129 HOH HOH . E 4 HOH A 130 2132 130 HOH HOH . E 4 HOH A 131 2133 131 HOH HOH . E 4 HOH A 132 2134 132 HOH HOH . E 4 HOH A 133 2135 133 HOH HOH . E 4 HOH A 134 2136 134 HOH HOH . E 4 HOH A 135 2137 135 HOH HOH . E 4 HOH A 136 2138 136 HOH HOH . E 4 HOH A 137 2139 137 HOH HOH . E 4 HOH A 138 2140 138 HOH HOH . E 4 HOH A 139 2141 139 HOH HOH . E 4 HOH A 140 2142 140 HOH HOH . E 4 HOH A 141 2143 141 HOH HOH . E 4 HOH A 142 2144 142 HOH HOH . E 4 HOH A 143 2145 143 HOH HOH . E 4 HOH A 144 2146 144 HOH HOH . E 4 HOH A 145 2147 145 HOH HOH . E 4 HOH A 146 2148 146 HOH HOH . E 4 HOH A 147 2149 147 HOH HOH . E 4 HOH A 148 2150 148 HOH HOH . E 4 HOH A 149 2151 149 HOH HOH . E 4 HOH A 150 2152 150 HOH HOH . E 4 HOH A 151 2153 151 HOH HOH . E 4 HOH A 152 2154 152 HOH HOH . E 4 HOH A 153 2155 153 HOH HOH . E 4 HOH A 154 2156 154 HOH HOH . E 4 HOH A 155 2157 155 HOH HOH . E 4 HOH A 156 2158 156 HOH HOH . E 4 HOH A 157 2159 157 HOH HOH . E 4 HOH A 158 2160 158 HOH HOH . E 4 HOH A 159 2161 159 HOH HOH . E 4 HOH A 160 2162 160 HOH HOH . E 4 HOH A 161 2163 161 HOH HOH . E 4 HOH A 162 2164 162 HOH HOH . E 4 HOH A 163 2165 163 HOH HOH . E 4 HOH A 164 2166 164 HOH HOH . E 4 HOH A 165 2167 165 HOH HOH . E 4 HOH A 166 2168 166 HOH HOH . E 4 HOH A 167 2169 167 HOH HOH . E 4 HOH A 168 2170 168 HOH HOH . E 4 HOH A 169 2171 169 HOH HOH . E 4 HOH A 170 2172 170 HOH HOH . E 4 HOH A 171 2173 171 HOH HOH . E 4 HOH A 172 2174 172 HOH HOH . E 4 HOH A 173 2175 173 HOH HOH . E 4 HOH A 174 2176 174 HOH HOH . E 4 HOH A 175 2177 175 HOH HOH . E 4 HOH A 176 2178 176 HOH HOH . E 4 HOH A 177 2179 177 HOH HOH . E 4 HOH A 178 2180 178 HOH HOH . E 4 HOH A 179 2181 179 HOH HOH . E 4 HOH A 180 2182 180 HOH HOH . E 4 HOH A 181 2183 181 HOH HOH . E 4 HOH A 182 2184 182 HOH HOH . E 4 HOH A 183 2185 183 HOH HOH . E 4 HOH A 184 2186 184 HOH HOH . E 4 HOH A 185 2187 185 HOH HOH . E 4 HOH A 186 2188 186 HOH HOH . E 4 HOH A 187 2189 187 HOH HOH . E 4 HOH A 188 2190 188 HOH HOH . E 4 HOH A 189 2191 189 HOH HOH . E 4 HOH A 190 2192 190 HOH HOH . E 4 HOH A 191 2193 191 HOH HOH . E 4 HOH A 192 2194 192 HOH HOH . E 4 HOH A 193 2195 193 HOH HOH . E 4 HOH A 194 2196 194 HOH HOH . E 4 HOH A 195 2197 195 HOH HOH . E 4 HOH A 196 2198 196 HOH HOH . E 4 HOH A 197 2199 197 HOH HOH . E 4 HOH A 198 2200 198 HOH HOH . E 4 HOH A 199 2201 199 HOH HOH . E 4 HOH A 200 2202 200 HOH HOH . E 4 HOH A 201 2203 201 HOH HOH . E 4 HOH A 202 2204 202 HOH HOH . E 4 HOH A 203 2205 203 HOH HOH . E 4 HOH A 204 2206 204 HOH HOH . E 4 HOH A 205 2207 205 HOH HOH . E 4 HOH A 206 2208 206 HOH HOH . E 4 HOH A 207 2209 207 HOH HOH . E 4 HOH A 208 2210 208 HOH HOH . E 4 HOH A 209 2211 209 HOH HOH . E 4 HOH A 210 2212 210 HOH HOH . E 4 HOH A 211 2213 211 HOH HOH . E 4 HOH A 212 2214 212 HOH HOH . E 4 HOH A 213 2215 213 HOH HOH . E 4 HOH A 214 2216 214 HOH HOH . E 4 HOH A 215 2217 215 HOH HOH . E 4 HOH A 216 2218 216 HOH HOH . E 4 HOH A 217 2219 217 HOH HOH . E 4 HOH A 218 2220 218 HOH HOH . E 4 HOH A 219 2221 219 HOH HOH . E 4 HOH A 220 2222 220 HOH HOH . E 4 HOH A 221 2223 221 HOH HOH . E 4 HOH A 222 2224 222 HOH HOH . E 4 HOH A 223 2225 223 HOH HOH . E 4 HOH A 224 2226 224 HOH HOH . E 4 HOH A 225 2227 225 HOH HOH . E 4 HOH A 226 2228 226 HOH HOH . E 4 HOH A 227 2229 227 HOH HOH . E 4 HOH A 228 2230 228 HOH HOH . E 4 HOH A 229 2231 229 HOH HOH . E 4 HOH A 230 2232 230 HOH HOH . E 4 HOH A 231 2233 231 HOH HOH . E 4 HOH A 232 2234 232 HOH HOH . E 4 HOH A 233 2235 233 HOH HOH . E 4 HOH A 234 2236 234 HOH HOH . E 4 HOH A 235 2237 235 HOH HOH . E 4 HOH A 236 2238 236 HOH HOH . E 4 HOH A 237 2239 237 HOH HOH . E 4 HOH A 238 2240 238 HOH HOH . E 4 HOH A 239 2241 239 HOH HOH . E 4 HOH A 240 2242 240 HOH HOH . E 4 HOH A 241 2243 241 HOH HOH . E 4 HOH A 242 2244 242 HOH HOH . E 4 HOH A 243 2245 243 HOH HOH . E 4 HOH A 244 2246 244 HOH HOH . E 4 HOH A 245 2247 245 HOH HOH . E 4 HOH A 246 2248 246 HOH HOH . E 4 HOH A 247 2249 247 HOH HOH . E 4 HOH A 248 2250 248 HOH HOH . E 4 HOH A 249 2251 249 HOH HOH . E 4 HOH A 250 2252 250 HOH HOH . E 4 HOH A 251 2253 251 HOH HOH . E 4 HOH A 252 2254 252 HOH HOH . E 4 HOH A 253 2255 253 HOH HOH . E 4 HOH A 254 2256 254 HOH HOH . E 4 HOH A 255 2257 255 HOH HOH . E 4 HOH A 256 2258 256 HOH HOH . E 4 HOH A 257 2259 257 HOH HOH . E 4 HOH A 258 2260 258 HOH HOH . E 4 HOH A 259 2261 259 HOH HOH . E 4 HOH A 260 2262 260 HOH HOH . E 4 HOH A 261 2263 261 HOH HOH . E 4 HOH A 262 2264 262 HOH HOH . E 4 HOH A 263 2265 263 HOH HOH . E 4 HOH A 264 2266 264 HOH HOH . E 4 HOH A 265 2267 265 HOH HOH . E 4 HOH A 266 2268 266 HOH HOH . E 4 HOH A 267 2269 267 HOH HOH . E 4 HOH A 268 2270 268 HOH HOH . E 4 HOH A 269 2271 269 HOH HOH . E 4 HOH A 270 2272 270 HOH HOH . E 4 HOH A 271 2273 271 HOH HOH . E 4 HOH A 272 2274 272 HOH HOH . E 4 HOH A 273 2275 273 HOH HOH . E 4 HOH A 274 2276 274 HOH HOH . E 4 HOH A 275 2277 275 HOH HOH . E 4 HOH A 276 2278 276 HOH HOH . E 4 HOH A 277 2279 277 HOH HOH . E 4 HOH A 278 2280 278 HOH HOH . E 4 HOH A 279 2281 279 HOH HOH . E 4 HOH A 280 2282 280 HOH HOH . E 4 HOH A 281 2283 281 HOH HOH . E 4 HOH A 282 2284 282 HOH HOH . E 4 HOH A 283 2285 283 HOH HOH . E 4 HOH A 284 2286 284 HOH HOH . E 4 HOH A 285 2287 285 HOH HOH . E 4 HOH A 286 2288 286 HOH HOH . E 4 HOH A 287 2289 287 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -17.868 -4.315 41.27 1 26.93 ? C1 GOL 2002 A 1 HETATM 2 O O1 GOL . . . D 3 -19.063 -5.044 41.322 1 23.01 ? O1 GOL 2002 A 1 HETATM 3 C C2 GOL . . . D 3 -18.114 -2.959 41.944 1 31.88 ? C2 GOL 2002 A 1 HETATM 4 O O2 GOL . . . D 3 -17.077 -2.132 41.518 1 26.03 ? O2 GOL 2002 A 1 HETATM 5 C C3 GOL . . . D 3 -18.158 -3.096 43.497 1 32.21 ? C3 GOL 2002 A 1 HETATM 6 O O3 GOL . . . D 3 -16.912 -3.486 44.088 1 30.01 ? O3 GOL 2002 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #