data_2A8H # _model_server_result.job_id LF-C0APGskzjh_P5kihUJA _model_server_result.datetime_utc '2024-12-27 01:43:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a8h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":159}' # _entry.id 2A8H # _exptl.entry_id 2A8H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 413.512 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-({4-[(4-AMINOBUT-2-YNYL)OXY]PHENYL}SULFONYL)-N-HYDROXY-2,2-DIMETHYLTHIOMORPHOLINE-3-CARBOXAMIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2A8H _cell.length_a 48.367 _cell.length_b 59.209 _cell.length_c 198.011 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A8H _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 225 1_555 A SG CYS 119 A CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 151 A CYS 365 1_555 A SG CYS 255 A CYS 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf3 A SG CYS 209 A CYS 423 1_555 A SG CYS 239 A CYS 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc1 D O4 4NH . A 4NH 158 1_555 C ZN ZN . A ZN 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc2 D O5 4NH . A 4NH 158 1_555 C ZN ZN . A ZN 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc3 D N3 4NH . A 4NH 158 1_555 C ZN ZN . A ZN 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc4 A NE2 HIS 191 A HIS 405 1_555 C ZN ZN . A ZN 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc5 A NE2 HIS 195 A HIS 409 1_555 C ZN ZN . A ZN 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc6 A NE2 HIS 201 A HIS 415 1_555 C ZN ZN . A ZN 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? metalc ? metalc7 F O5 4NH . B 4NH 159 1_555 E ZN ZN . B ZN 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? metalc ? metalc8 F O4 4NH . B 4NH 159 1_555 E ZN ZN . B ZN 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc9 F N3 4NH . B 4NH 159 1_555 E ZN ZN . B ZN 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc10 B NE2 HIS 191 B HIS 405 1_555 E ZN ZN . B ZN 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc11 B NE2 HIS 195 B HIS 409 1_555 E ZN ZN . B ZN 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc12 B NE2 HIS 201 B HIS 415 1_555 E ZN ZN . B ZN 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? # _chem_comp.formula 'C17 H23 N3 O5 S2' _chem_comp.formula_weight 413.512 _chem_comp.id 4NH _chem_comp.mon_nstd_flag . _chem_comp.name 4-({4-[(4-AMINOBUT-2-YNYL)OXY]PHENYL}SULFONYL)-N-HYDROXY-2,2-DIMETHYLTHIOMORPHOLINE-3-CARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 4NH sing 1 n n C1 H11A 4NH sing 2 n n C1 H12 4NH sing 3 n n C1 H13 4NH sing 4 n n C2 C3 4NH sing 5 n n C2 S1 4NH sing 6 n n C2 C17 4NH sing 7 n n C3 N1 4NH sing 8 n n C3 C16 4NH sing 9 n n C3 H3 4NH sing 10 n n N1 C4 4NH sing 11 n n N1 S2 4NH sing 12 n n C4 C5 4NH sing 13 n n C4 H41 4NH sing 14 n n C4 H42 4NH sing 15 n n C5 S1 4NH sing 16 n n C5 H51 4NH sing 17 n n C5 H52 4NH sing 18 n n S2 O1 4NH doub 19 n n S2 O2 4NH doub 20 n n S2 C6 4NH sing 21 n n C6 C7 4NH sing 22 n y C6 C11 4NH doub 23 n y C7 C8 4NH doub 24 n y C7 H7 4NH sing 25 n n C8 C9 4NH sing 26 n y C8 H8 4NH sing 27 n n C9 C10 4NH doub 28 n y C9 O3 4NH sing 29 n n C10 C11 4NH sing 30 n y C10 H10 4NH sing 31 n n C11 H11 4NH sing 32 n n O3 C12 4NH sing 33 n n C12 C13 4NH sing 34 n n C12 H121 4NH sing 35 n n C12 H122 4NH sing 36 n n C13 C14 4NH trip 37 n n C14 C15 4NH sing 38 n n C15 N2 4NH sing 39 n n C15 H151 4NH sing 40 n n C15 H152 4NH sing 41 n n N2 HN21 4NH sing 42 n n N2 HN22 4NH sing 43 n n C16 O4 4NH doub 44 n n C16 N3 4NH sing 45 n n N3 O5 4NH sing 46 n n N3 HN3 4NH sing 47 n n O5 HO5 4NH sing 48 n n C17 H171 4NH sing 49 n n C17 H172 4NH sing 50 n n C17 H173 4NH sing 51 n n # _atom_sites.entry_id 2A8H _atom_sites.fract_transf_matrix[1][1] 0.020675 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016889 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00505 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 486 476 ZN ZN . D 3 4NH A 1 158 158 4NH 4NH . E 2 ZN B 1 486 477 ZN ZN . F 3 4NH B 1 159 159 4NH 4NH . G 4 HOH A 1 3 3 HOH HOH . G 4 HOH A 2 4 4 HOH HOH . G 4 HOH A 3 5 5 HOH HOH . G 4 HOH A 4 6 6 HOH HOH . G 4 HOH A 5 7 7 HOH HOH . G 4 HOH A 6 8 8 HOH HOH . G 4 HOH A 7 9 9 HOH HOH . G 4 HOH A 8 11 11 HOH HOH . G 4 HOH A 9 15 15 HOH HOH . G 4 HOH A 10 16 16 HOH HOH . G 4 HOH A 11 21 21 HOH HOH . G 4 HOH A 12 22 22 HOH HOH . G 4 HOH A 13 25 25 HOH HOH . G 4 HOH A 14 27 27 HOH HOH . G 4 HOH A 15 28 28 HOH HOH . G 4 HOH A 16 30 30 HOH HOH . G 4 HOH A 17 32 32 HOH HOH . G 4 HOH A 18 35 35 HOH HOH . G 4 HOH A 19 36 36 HOH HOH . G 4 HOH A 20 39 39 HOH HOH . G 4 HOH A 21 42 42 HOH HOH . G 4 HOH A 22 43 43 HOH HOH . G 4 HOH A 23 44 44 HOH HOH . G 4 HOH A 24 45 45 HOH HOH . G 4 HOH A 25 47 47 HOH HOH . G 4 HOH A 26 48 48 HOH HOH . G 4 HOH A 27 49 49 HOH HOH . G 4 HOH A 28 50 50 HOH HOH . G 4 HOH A 29 51 51 HOH HOH . G 4 HOH A 30 52 52 HOH HOH . G 4 HOH A 31 53 53 HOH HOH . G 4 HOH A 32 57 57 HOH HOH . G 4 HOH A 33 59 59 HOH HOH . G 4 HOH A 34 60 60 HOH HOH . G 4 HOH A 35 61 61 HOH HOH . G 4 HOH A 36 63 63 HOH HOH . G 4 HOH A 37 65 65 HOH HOH . G 4 HOH A 38 67 67 HOH HOH . G 4 HOH A 39 68 68 HOH HOH . G 4 HOH A 40 70 70 HOH HOH . G 4 HOH A 41 71 71 HOH HOH . G 4 HOH A 42 73 73 HOH HOH . G 4 HOH A 43 74 74 HOH HOH . G 4 HOH A 44 77 77 HOH HOH . G 4 HOH A 45 78 78 HOH HOH . G 4 HOH A 46 80 80 HOH HOH . G 4 HOH A 47 81 81 HOH HOH . G 4 HOH A 48 82 82 HOH HOH . G 4 HOH A 49 83 83 HOH HOH . G 4 HOH A 50 87 87 HOH HOH . G 4 HOH A 51 88 88 HOH HOH . G 4 HOH A 52 90 90 HOH HOH . G 4 HOH A 53 91 91 HOH HOH . G 4 HOH A 54 92 92 HOH HOH . G 4 HOH A 55 96 96 HOH HOH . G 4 HOH A 56 98 98 HOH HOH . G 4 HOH A 57 99 99 HOH HOH . G 4 HOH A 58 100 100 HOH HOH . G 4 HOH A 59 101 101 HOH HOH . G 4 HOH A 60 105 105 HOH HOH . G 4 HOH A 61 106 106 HOH HOH . G 4 HOH A 62 107 107 HOH HOH . G 4 HOH A 63 108 108 HOH HOH . G 4 HOH A 64 109 109 HOH HOH . G 4 HOH A 65 112 112 HOH HOH . G 4 HOH A 66 113 113 HOH HOH . G 4 HOH A 67 118 118 HOH HOH . G 4 HOH A 68 119 119 HOH HOH . G 4 HOH A 69 120 120 HOH HOH . G 4 HOH A 70 121 121 HOH HOH . G 4 HOH A 71 123 123 HOH HOH . G 4 HOH A 72 124 124 HOH HOH . G 4 HOH A 73 125 125 HOH HOH . G 4 HOH A 74 126 126 HOH HOH . G 4 HOH A 75 130 130 HOH HOH . G 4 HOH A 76 131 131 HOH HOH . G 4 HOH A 77 132 132 HOH HOH . G 4 HOH A 78 133 133 HOH HOH . G 4 HOH A 79 134 134 HOH HOH . G 4 HOH A 80 135 135 HOH HOH . G 4 HOH A 81 136 136 HOH HOH . G 4 HOH A 82 137 137 HOH HOH . G 4 HOH A 83 138 138 HOH HOH . G 4 HOH A 84 139 139 HOH HOH . G 4 HOH A 85 141 141 HOH HOH . G 4 HOH A 86 145 145 HOH HOH . G 4 HOH A 87 147 147 HOH HOH . G 4 HOH A 88 148 148 HOH HOH . G 4 HOH A 89 151 151 HOH HOH . G 4 HOH A 90 153 153 HOH HOH . G 4 HOH A 91 154 154 HOH HOH . H 4 HOH B 1 1 1 HOH HOH . H 4 HOH B 2 2 2 HOH HOH . H 4 HOH B 3 12 12 HOH HOH . H 4 HOH B 4 13 13 HOH HOH . H 4 HOH B 5 14 14 HOH HOH . H 4 HOH B 6 17 17 HOH HOH . H 4 HOH B 7 18 18 HOH HOH . H 4 HOH B 8 20 20 HOH HOH . H 4 HOH B 9 23 23 HOH HOH . H 4 HOH B 10 24 24 HOH HOH . H 4 HOH B 11 26 26 HOH HOH . H 4 HOH B 12 29 29 HOH HOH . H 4 HOH B 13 31 31 HOH HOH . H 4 HOH B 14 33 33 HOH HOH . H 4 HOH B 15 34 34 HOH HOH . H 4 HOH B 16 38 38 HOH HOH . H 4 HOH B 17 40 40 HOH HOH . H 4 HOH B 18 41 41 HOH HOH . H 4 HOH B 19 46 46 HOH HOH . H 4 HOH B 20 54 54 HOH HOH . H 4 HOH B 21 55 55 HOH HOH . H 4 HOH B 22 62 62 HOH HOH . H 4 HOH B 23 64 64 HOH HOH . H 4 HOH B 24 66 66 HOH HOH . H 4 HOH B 25 72 72 HOH HOH . H 4 HOH B 26 75 75 HOH HOH . H 4 HOH B 27 79 79 HOH HOH . H 4 HOH B 28 84 84 HOH HOH . H 4 HOH B 29 85 85 HOH HOH . H 4 HOH B 30 86 86 HOH HOH . H 4 HOH B 31 89 89 HOH HOH . H 4 HOH B 32 93 93 HOH HOH . H 4 HOH B 33 94 94 HOH HOH . H 4 HOH B 34 95 95 HOH HOH . H 4 HOH B 35 97 97 HOH HOH . H 4 HOH B 36 102 102 HOH HOH . H 4 HOH B 37 103 103 HOH HOH . H 4 HOH B 38 104 104 HOH HOH . H 4 HOH B 39 111 111 HOH HOH . H 4 HOH B 40 114 114 HOH HOH . H 4 HOH B 41 115 115 HOH HOH . H 4 HOH B 42 116 116 HOH HOH . H 4 HOH B 43 117 117 HOH HOH . H 4 HOH B 44 122 122 HOH HOH . H 4 HOH B 45 128 128 HOH HOH . H 4 HOH B 46 129 129 HOH HOH . H 4 HOH B 47 140 140 HOH HOH . H 4 HOH B 48 142 142 HOH HOH . H 4 HOH B 49 143 143 HOH HOH . H 4 HOH B 50 146 146 HOH HOH . H 4 HOH B 51 149 149 HOH HOH . H 4 HOH B 52 150 150 HOH HOH . H 4 HOH B 53 152 152 HOH HOH . H 4 HOH B 54 155 155 HOH HOH . H 4 HOH B 55 156 156 HOH HOH . H 4 HOH B 56 157 157 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4NH . . . F 3 22.585 48.812 138.298 1 38.58 ? C1 4NH 159 B 1 HETATM 2 C C2 4NH . . . F 3 23.009 49.256 136.885 1 38.34 ? C2 4NH 159 B 1 HETATM 3 C C3 4NH . . . F 3 21.875 50.086 136.202 1 36.12 ? C3 4NH 159 B 1 HETATM 4 N N1 4NH . . . F 3 22.221 50.411 134.755 1 38.42 ? N1 4NH 159 B 1 HETATM 5 C C4 4NH . . . F 3 22.452 49.228 133.836 1 39.41 ? C4 4NH 159 B 1 HETATM 6 C C5 4NH . . . F 3 23.618 48.384 134.311 1 39.19 ? C5 4NH 159 B 1 HETATM 7 S S1 4NH . . . F 3 23.279 47.688 135.944 1 38.66 ? S1 4NH 159 B 1 HETATM 8 S S2 4NH . . . F 3 22.364 52.046 134.11 1 39.66 ? S2 4NH 159 B 1 HETATM 9 O O1 4NH . . . F 3 23.31 52.099 133.013 1 39.07 ? O1 4NH 159 B 1 HETATM 10 O O2 4NH . . . F 3 22.482 52.967 135.225 1 39.37 ? O2 4NH 159 B 1 HETATM 11 C C6 4NH . . . F 3 20.782 52.292 133.354 1 39.46 ? C6 4NH 159 B 1 HETATM 12 C C7 4NH . . . F 3 20.534 51.816 132.07 1 39.13 ? C7 4NH 159 B 1 HETATM 13 C C8 4NH . . . F 3 19.277 52.021 131.493 1 38.56 ? C8 4NH 159 B 1 HETATM 14 C C9 4NH . . . F 3 18.278 52.699 132.197 1 38.34 ? C9 4NH 159 B 1 HETATM 15 C C10 4NH . . . F 3 18.549 53.17 133.489 1 38.95 ? C10 4NH 159 B 1 HETATM 16 C C11 4NH . . . F 3 19.799 52.969 134.072 1 40.37 ? C11 4NH 159 B 1 HETATM 17 O O3 4NH . . . F 3 17.011 52.964 131.747 1 38.63 ? O3 4NH 159 B 1 HETATM 18 C C12 4NH . . . F 3 16.784 53.032 130.337 1 36.8 ? C12 4NH 159 B 1 HETATM 19 C C13 4NH . . . F 3 17.413 54.221 129.75 1 35.27 ? C13 4NH 159 B 1 HETATM 20 C C14 4NH . . . F 3 17.928 55.194 129.27 1 35.09 ? C14 4NH 159 B 1 HETATM 21 C C15 4NH . . . F 3 18.554 56.377 128.686 1 34.11 ? C15 4NH 159 B 1 HETATM 22 N N2 4NH . . . F 3 19.911 56.031 128.196 1 36.08 ? N2 4NH 159 B 1 HETATM 23 C C16 4NH . . . F 3 20.545 49.35 136.299 1 32.26 ? C16 4NH 159 B 1 HETATM 24 O O4 4NH . . . F 3 20.374 48.214 135.863 1 29.74 ? O4 4NH 159 B 1 HETATM 25 N N3 4NH . . . F 3 19.572 50.096 136.922 1 29.27 ? N3 4NH 159 B 1 HETATM 26 O O5 4NH . . . F 3 18.318 49.481 137.047 1 29.24 ? O5 4NH 159 B 1 HETATM 27 C C17 4NH . . . F 3 24.361 49.987 136.979 1 39.63 ? C17 4NH 159 B 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #