data_2A8Q # _model_server_result.job_id -FBXyRzuE98PKZNBnbMzPA _model_server_result.datetime_utc '2025-03-03 00:45:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a8q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 2A8Q # _exptl.entry_id 2A8Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2A8Q _cell.length_a 49.828 _cell.length_b 82.284 _cell.length_c 111.86 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A8Q _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 173 A LEU 173 1_555 A N YCM 174 A YCM 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C YCM 174 A YCM 174 1_555 A N ASN 175 A ASN 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 B C LEU 173 B LEU 173 1_555 B N YCM 174 B YCM 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 B C YCM 174 B YCM 174 1_555 B N ASN 175 B ASN 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A O GLY 72 A GLY 72 1_555 C MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc2 A OE2 GLU 89 A GLU 89 1_555 D MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc3 A OE1 GLU 89 A GLU 89 1_555 E MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc4 A OE2 GLU 89 A GLU 89 1_555 E MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc5 A OE2 GLU 93 A GLU 93 1_555 C MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc6 A OE2 GLU 93 A GLU 93 1_555 D MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc7 C MN MN . A MN 300 1_555 F O3 POP . A POP 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc8 C MN MN . A MN 300 1_555 F O6 POP . A POP 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc9 D MN MN . A MN 301 1_555 F O3 POP . A POP 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc10 E MN MN . A MN 302 1_555 F O1 POP . A POP 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc11 B O GLY 72 B GLY 72 1_555 G MN MN . B MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc12 B OE2 GLU 93 B GLU 93 1_555 H MN MN . B MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2A8Q _atom_sites.fract_transf_matrix[1][1] 0.020069 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012153 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00894 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 300 300 MN MN . D 2 MN A 1 301 301 MN MN . E 2 MN A 1 302 302 MN MN . F 3 POP A 1 1307 1307 POP POP . G 2 MN B 1 304 304 MN MN . H 2 MN B 1 305 305 MN MN . I 4 HOH A 1 1308 2 HOH HOH . I 4 HOH A 2 1309 3 HOH HOH . I 4 HOH A 3 1310 4 HOH HOH . I 4 HOH A 4 1311 5 HOH HOH . I 4 HOH A 5 1312 9 HOH HOH . I 4 HOH A 6 1313 13 HOH HOH . I 4 HOH A 7 1314 14 HOH HOH . I 4 HOH A 8 1315 32 HOH HOH . I 4 HOH A 9 1316 33 HOH HOH . I 4 HOH A 10 1317 34 HOH HOH . I 4 HOH A 11 1318 36 HOH HOH . I 4 HOH A 12 1319 37 HOH HOH . I 4 HOH A 13 1320 38 HOH HOH . I 4 HOH A 14 1321 40 HOH HOH . I 4 HOH A 15 1322 50 HOH HOH . J 4 HOH B 1 306 7 HOH HOH . J 4 HOH B 2 307 8 HOH HOH . J 4 HOH B 3 308 10 HOH HOH . J 4 HOH B 4 309 15 HOH HOH . J 4 HOH B 5 310 16 HOH HOH . J 4 HOH B 6 311 17 HOH HOH . J 4 HOH B 7 312 19 HOH HOH . J 4 HOH B 8 313 20 HOH HOH . J 4 HOH B 9 314 21 HOH HOH . J 4 HOH B 10 315 22 HOH HOH . J 4 HOH B 11 316 23 HOH HOH . J 4 HOH B 12 317 25 HOH HOH . J 4 HOH B 13 318 26 HOH HOH . J 4 HOH B 14 319 27 HOH HOH . J 4 HOH B 15 320 28 HOH HOH . J 4 HOH B 16 321 29 HOH HOH . J 4 HOH B 17 322 31 HOH HOH . J 4 HOH B 18 323 39 HOH HOH . J 4 HOH B 19 324 41 HOH HOH . J 4 HOH B 20 325 42 HOH HOH . J 4 HOH B 21 326 43 HOH HOH . J 4 HOH B 22 327 44 HOH HOH . J 4 HOH B 23 328 45 HOH HOH . J 4 HOH B 24 329 46 HOH HOH . J 4 HOH B 25 330 47 HOH HOH . J 4 HOH B 26 331 48 HOH HOH . J 4 HOH B 27 332 49 HOH HOH . J 4 HOH B 28 333 51 HOH HOH . J 4 HOH B 29 334 52 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 16.379 _atom_site.Cartn_y 51.412 _atom_site.Cartn_z 1.318 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 69.74 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #