data_2A8R
#
_model_server_result.job_id            M0vKk26CtJMaUUazEkDQug 
_model_server_result.datetime_utc      '2024-10-19 01:32:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2a8r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1307}' 
#
_entry.id    2A8R 
#
_exptl.entry_id    2A8R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              175.959 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PYROPHOSPHATE 2-' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2A8R 
_cell.length_a            50.2 
_cell.length_b            82.15 
_cell.length_c            112.24 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2A8R 
_symmetry.cell_setting             orthorhombic 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LYS 119 A LYS 119 1_555 A N YCM 120 A YCM 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C YCM 120 A YCM 120 1_555 A N VAL 121 A VAL 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 A C LEU 173 A LEU 173 1_555 A N YCM 174 A YCM 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale4 A C YCM 174 A YCM 174 1_555 A N ASN 175 A ASN 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale5 B C LYS 119 B LYS 119 1_555 B N YCM 120 B YCM 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 B C YCM 120 B YCM 120 1_555 B N VAL 121 B VAL 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale7 B C LEU 173 B LEU 173 1_555 B N YCM 174 B YCM 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale8 B C YCM 174 B YCM 174 1_555 B N ASN 175 B ASN 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
metalc ? metalc1 A O GLY 72 A GLY 72 1_555 C MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc2 A OE2 GLU 89 A GLU 89 1_555 D MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc3 A OE2 GLU 93 A GLU 93 1_555 C MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc4 A OE2 GLU 93 A GLU 93 1_555 D MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc5 A OE1 GLU 150 A GLU 150 1_555 D MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc6 C MN MN . A MN 300 1_555 F O3 POP . A POP 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc7 C MN MN . A MN 300 1_555 F O6 POP . A POP 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? 
metalc ? metalc8 D MN MN . A MN 301 1_555 F O3 POP . A POP 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc9 E MN MN . A MN 302 1_555 F O1 POP . A POP 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? 
metalc ? metalc10 B O GLY 72 B GLY 72 1_555 G MN MN . B MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc11 B OE2 GLU 89 B GLU 89 1_555 H MN MN . B MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc12 B OE2 GLU 93 B GLU 93 1_555 G MN MN . B MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc13 B OE2 GLU 93 B GLU 93 1_555 H MN MN . B MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc14 B OE1 GLU 150 B GLU 150 1_555 H MN MN . B MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? 
metalc ? metalc15 G MN MN . B MN 304 1_555 I O3 POP . B POP 2308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc16 G MN MN . B MN 304 1_555 I O6 POP . B POP 2308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
metalc ? metalc17 H MN MN . B MN 305 1_555 I O3 POP . B POP 2308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? 
#
_chem_comp.formula           'H2 O7 P2 -2' 
_chem_comp.formula_weight    175.959 
_chem_comp.id                POP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PYROPHOSPHATE 2-' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O1 POP doub 260 n n 
P1 O2 POP sing 261 n n 
P1 O3 POP sing 262 n n 
P1 O POP sing 263 n n 
O2 HO2 POP sing 264 n n 
O P2 POP sing 265 n n 
P2 O4 POP doub 266 n n 
P2 O5 POP sing 267 n n 
P2 O6 POP sing 268 n n 
O5 HO5 POP sing 269 n n 
#
_atom_sites.entry_id                     2A8R 
_atom_sites.fract_transf_matrix[1][1]    0.01992 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012173 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008909 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MN A 1 300 300 MN MN . 
D 2 MN A 1 301 301 MN MN . 
E 2 MN A 1 302 302 MN MN . 
F 3 POP A 1 1307 1307 POP POP . 
G 2 MN B 1 304 304 MN MN . 
H 2 MN B 1 305 305 MN MN . 
I 3 POP B 1 2308 2308 POP POP . 
J 4 HOH A 1 1308 302 HOH HOH . 
J 4 HOH A 2 1309 313 HOH HOH . 
J 4 HOH A 3 1310 316 HOH HOH . 
J 4 HOH A 4 1311 322 HOH HOH . 
J 4 HOH A 5 1312 323 HOH HOH . 
J 4 HOH A 6 1313 361 HOH HOH . 
J 4 HOH A 7 1314 365 HOH HOH . 
J 4 HOH A 8 1315 368 HOH HOH . 
J 4 HOH A 9 1316 378 HOH HOH . 
J 4 HOH A 10 1317 381 HOH HOH . 
J 4 HOH A 11 1318 410 HOH HOH . 
J 4 HOH A 12 1319 415 HOH HOH . 
J 4 HOH A 13 1320 441 HOH HOH . 
J 4 HOH A 14 1321 442 HOH HOH . 
J 4 HOH A 15 1322 444 HOH HOH . 
J 4 HOH A 16 1323 446 HOH HOH . 
J 4 HOH A 17 1324 455 HOH HOH . 
J 4 HOH A 18 1325 467 HOH HOH . 
J 4 HOH A 19 1326 468 HOH HOH . 
K 4 HOH B 1 2309 301 HOH HOH . 
K 4 HOH B 2 2310 303 HOH HOH . 
K 4 HOH B 3 2311 304 HOH HOH . 
K 4 HOH B 4 2312 308 HOH HOH . 
K 4 HOH B 5 2313 310 HOH HOH . 
K 4 HOH B 6 2314 312 HOH HOH . 
K 4 HOH B 7 2315 314 HOH HOH . 
K 4 HOH B 8 2316 315 HOH HOH . 
K 4 HOH B 9 2317 317 HOH HOH . 
K 4 HOH B 10 2318 320 HOH HOH . 
K 4 HOH B 11 2319 325 HOH HOH . 
K 4 HOH B 12 2320 327 HOH HOH . 
K 4 HOH B 13 2321 336 HOH HOH . 
K 4 HOH B 14 2322 346 HOH HOH . 
K 4 HOH B 15 2323 347 HOH HOH . 
K 4 HOH B 16 2324 348 HOH HOH . 
K 4 HOH B 17 2325 362 HOH HOH . 
K 4 HOH B 18 2326 369 HOH HOH . 
K 4 HOH B 19 2327 371 HOH HOH . 
K 4 HOH B 20 2328 390 HOH HOH . 
K 4 HOH B 21 2329 394 HOH HOH . 
K 4 HOH B 22 2330 406 HOH HOH . 
K 4 HOH B 23 2331 409 HOH HOH . 
K 4 HOH B 24 2332 416 HOH HOH . 
K 4 HOH B 25 2333 417 HOH HOH . 
K 4 HOH B 26 2334 418 HOH HOH . 
K 4 HOH B 27 2335 423 HOH HOH . 
K 4 HOH B 28 2336 424 HOH HOH . 
K 4 HOH B 29 2337 425 HOH HOH . 
K 4 HOH B 30 2338 426 HOH HOH . 
K 4 HOH B 31 2339 427 HOH HOH . 
K 4 HOH B 32 2340 428 HOH HOH . 
K 4 HOH B 33 2341 429 HOH HOH . 
K 4 HOH B 34 2342 430 HOH HOH . 
K 4 HOH B 35 2343 431 HOH HOH . 
K 4 HOH B 36 2344 433 HOH HOH . 
K 4 HOH B 37 2345 435 HOH HOH . 
K 4 HOH B 38 2346 439 HOH HOH . 
K 4 HOH B 39 2347 440 HOH HOH . 
K 4 HOH B 40 2348 443 HOH HOH . 
K 4 HOH B 41 2349 451 HOH HOH . 
K 4 HOH B 42 2350 453 HOH HOH . 
K 4 HOH B 43 2351 454 HOH HOH . 
K 4 HOH B 44 2352 456 HOH HOH . 
K 4 HOH B 45 2353 458 HOH HOH . 
K 4 HOH B 46 2354 459 HOH HOH . 
K 4 HOH B 47 2355 460 HOH HOH . 
K 4 HOH B 48 2356 461 HOH HOH . 
K 4 HOH B 49 2357 462 HOH HOH . 
K 4 HOH B 50 2358 463 HOH HOH . 
K 4 HOH B 51 2359 464 HOH HOH . 
K 4 HOH B 52 2360 465 HOH HOH . 
K 4 HOH B 53 2361 469 HOH HOH . 
K 4 HOH B 54 2362 470 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 POP . . . F 3 19.488 53.318 1.494 0.5 45.53 ? P1 POP 1307 A 1 
HETATM 2 O O1 POP . . . F 3 18.616 54.384 2.088 0.5 41.21 ? O1 POP 1307 A 1 
HETATM 3 O O2 POP . . . F 3 19.651 53.576 0.017 0.5 45.74 ? O2 POP 1307 A 1 
HETATM 4 O O3 POP . . . F 3 18.885 51.955 1.725 0.5 53.62 ? O3 POP 1307 A 1 
HETATM 5 O O POP . . . F 3 20.905 53.396 2.243 0.5 50.86 ? O POP 1307 A 1 
HETATM 6 P P2 POP . . . F 3 22.13 52.403 1.917 0.5 53.72 ? P2 POP 1307 A 1 
HETATM 7 O O4 POP . . . F 3 22.324 52.338 0.426 0.5 52.59 ? O4 POP 1307 A 1 
HETATM 8 O O5 POP . . . F 3 23.371 52.977 2.573 0.5 59.37 ? O5 POP 1307 A 1 
HETATM 9 O O6 POP . . . F 3 21.867 51.033 2.478 0.5 50.75 ? O6 POP 1307 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           9 
#