data_2A8S # _model_server_result.job_id vNbJ_Hjg_YP4zAGpqmi2-g _model_server_result.datetime_utc '2024-10-19 00:52:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a8s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":250}' # _entry.id 2A8S # _exptl.entry_id 2A8S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2A8S _cell.length_a 49.998 _cell.length_b 82.553 _cell.length_c 112.16 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A8S _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 119 A LYS 119 1_555 A N YCM 120 A YCM 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C YCM 120 A YCM 120 1_555 A N VAL 121 A VAL 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C LEU 173 A LEU 173 1_555 A N YCM 174 A YCM 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C YCM 174 A YCM 174 1_555 A N ASN 175 A ASN 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale5 B C LYS 119 B LYS 119 1_555 B N YCM 120 B YCM 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 B C YCM 120 B YCM 120 1_555 B N VAL 121 B VAL 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 B C LEU 173 B LEU 173 1_555 B N YCM 174 B YCM 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 B C YCM 174 B YCM 174 1_555 B N ASN 175 B ASN 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A O GLY 72 A GLY 72 1_555 C MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc2 A OE2 GLU 89 A GLU 89 1_555 D MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc3 A OE1 GLU 89 A GLU 89 1_555 E MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc4 A OE2 GLU 93 A GLU 93 1_555 C MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc5 A OE2 GLU 93 A GLU 93 1_555 D MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc6 A OE1 GLU 150 A GLU 150 1_555 D MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc7 A OE2 GLU 150 A GLU 150 1_555 F MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc8 G O2B GTP . A GTP 250 1_555 C MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc9 G O1A GTP . A GTP 250 1_555 C MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc10 G O3G GTP . A GTP 250 1_555 D MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc11 G O2B GTP . A GTP 250 1_555 D MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc12 G O1G GTP . A GTP 250 1_555 E MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? metalc ? metalc13 G O3G GTP . A GTP 250 1_555 E MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc14 G PG GTP . A GTP 250 1_555 E MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc15 G O2G GTP . A GTP 250 1_555 F MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc16 G O3B GTP . A GTP 250 1_555 F MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc17 G O3G GTP . A GTP 250 1_555 F MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc18 G PG GTP . A GTP 250 1_555 F MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc19 B O GLY 72 B GLY 72 1_555 H MN MN . B MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc20 B OE2 GLU 89 B GLU 89 1_555 I MN MN . B MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc21 B OE2 GLU 89 B GLU 89 1_555 K MN MN . B MN 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc22 B OE1 GLU 89 B GLU 89 1_555 K MN MN . B MN 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc23 B OE2 GLU 92 B GLU 92 1_555 J MN MN . B MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc24 B OE2 GLU 93 B GLU 93 1_555 H MN MN . B MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc25 B OE2 GLU 93 B GLU 93 1_555 I MN MN . B MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc26 L O2B GTP . B GTP 251 1_555 H MN MN . B MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? metalc ? metalc27 L O1A GTP . B GTP 251 1_555 H MN MN . B MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc28 L O3G GTP . B GTP 251 1_555 I MN MN . B MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc29 L O2B GTP . B GTP 251 1_555 I MN MN . B MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc30 L O1G GTP . B GTP 251 1_555 K MN MN . B MN 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 2A8S _atom_sites.fract_transf_matrix[1][1] 0.020001 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012113 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008916 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 300 300 MN MN . D 2 MN A 1 301 301 MN MN . E 2 MN A 1 302 302 MN MN . F 2 MN A 1 303 303 MN MN . G 3 GTP A 1 250 250 GTP GTP . H 2 MN B 1 304 304 MN MN . I 2 MN B 1 305 305 MN MN . J 2 MN B 1 306 306 MN MN . K 2 MN B 1 307 307 MN MN . L 3 GTP B 1 251 251 GTP GTP . M 4 HOH A 1 508 508 HOH HOH . M 4 HOH A 2 509 509 HOH HOH . M 4 HOH A 3 519 519 HOH HOH . M 4 HOH A 4 527 527 HOH HOH . M 4 HOH A 5 531 531 HOH HOH . M 4 HOH A 6 539 539 HOH HOH . M 4 HOH A 7 551 551 HOH HOH . M 4 HOH A 8 574 574 HOH HOH . M 4 HOH A 9 579 579 HOH HOH . M 4 HOH A 10 583 583 HOH HOH . M 4 HOH A 11 584 584 HOH HOH . M 4 HOH A 12 605 605 HOH HOH . M 4 HOH A 13 615 615 HOH HOH . M 4 HOH A 14 622 622 HOH HOH . M 4 HOH A 15 628 628 HOH HOH . M 4 HOH A 16 639 639 HOH HOH . M 4 HOH A 17 640 640 HOH HOH . N 4 HOH B 1 501 501 HOH HOH . N 4 HOH B 2 503 503 HOH HOH . N 4 HOH B 3 504 504 HOH HOH . N 4 HOH B 4 505 505 HOH HOH . N 4 HOH B 5 506 506 HOH HOH . N 4 HOH B 6 510 510 HOH HOH . N 4 HOH B 7 511 511 HOH HOH . N 4 HOH B 8 513 513 HOH HOH . N 4 HOH B 9 517 517 HOH HOH . N 4 HOH B 10 518 518 HOH HOH . N 4 HOH B 11 525 525 HOH HOH . N 4 HOH B 12 529 529 HOH HOH . N 4 HOH B 13 535 535 HOH HOH . N 4 HOH B 14 536 536 HOH HOH . N 4 HOH B 15 537 537 HOH HOH . N 4 HOH B 16 542 542 HOH HOH . N 4 HOH B 17 545 545 HOH HOH . N 4 HOH B 18 547 547 HOH HOH . N 4 HOH B 19 550 550 HOH HOH . N 4 HOH B 20 560 560 HOH HOH . N 4 HOH B 21 569 569 HOH HOH . N 4 HOH B 22 581 581 HOH HOH . N 4 HOH B 23 590 590 HOH HOH . N 4 HOH B 24 599 599 HOH HOH . N 4 HOH B 25 600 600 HOH HOH . N 4 HOH B 26 607 607 HOH HOH . N 4 HOH B 27 612 612 HOH HOH . N 4 HOH B 28 619 619 HOH HOH . N 4 HOH B 29 630 630 HOH HOH . N 4 HOH B 30 631 631 HOH HOH . N 4 HOH B 31 633 633 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . G 3 16.78 55.041 1.363 1 61.6 ? PG GTP 250 A 1 HETATM 2 O O1G GTP . . . G 3 16.804 55.121 2.848 1 51.63 ? O1G GTP 250 A 1 HETATM 3 O O2G GTP . . . G 3 16.579 56.529 0.717 1 60.41 ? O2G GTP 250 A 1 HETATM 4 O O3G GTP . . . G 3 15.559 54.125 0.79 1 55.81 ? O3G GTP 250 A 1 HETATM 5 O O3B GTP . . . G 3 18.12 54.383 0.705 1 58.41 ? O3B GTP 250 A 1 HETATM 6 P PB GTP . . . G 3 18.884 53.286 1.559 1 58.36 ? PB GTP 250 A 1 HETATM 7 O O1B GTP . . . G 3 18.518 53.487 2.969 1 66.84 ? O1B GTP 250 A 1 HETATM 8 O O2B GTP . . . G 3 18.681 51.945 0.965 1 60.7 ? O2B GTP 250 A 1 HETATM 9 O O3A GTP . . . G 3 20.444 53.749 1.449 1 56.62 ? O3A GTP 250 A 1 HETATM 10 P PA GTP . . . G 3 21.646 52.66 1.502 1 57.85 ? PA GTP 250 A 1 HETATM 11 O O1A GTP . . . G 3 21.117 51.371 2 1 51.12 ? O1A GTP 250 A 1 HETATM 12 O O2A GTP . . . G 3 22.344 52.715 0.197 1 59.39 ? O2A GTP 250 A 1 HETATM 13 O O5' GTP . . . G 3 22.66 53.211 2.648 1 62.52 ? O5' GTP 250 A 1 HETATM 14 C C5' GTP . . . G 3 23.338 54.455 2.465 1 67.8 ? C5' GTP 250 A 1 HETATM 15 C C4' GTP . . . G 3 24.772 54.493 3.051 1 69.78 ? C4' GTP 250 A 1 HETATM 16 O O4' GTP . . . G 3 25.081 53.333 3.857 1 67.73 ? O4' GTP 250 A 1 HETATM 17 C C3' GTP . . . G 3 25.786 54.541 1.9 1 70.53 ? C3' GTP 250 A 1 HETATM 18 O O3' GTP . . . G 3 26.728 55.584 2.17 1 74.91 ? O3' GTP 250 A 1 HETATM 19 C C2' GTP . . . G 3 26.488 53.188 1.936 1 69.55 ? C2' GTP 250 A 1 HETATM 20 O O2' GTP . . . G 3 27.888 53.368 1.736 1 72.8 ? O2' GTP 250 A 1 HETATM 21 C C1' GTP . . . G 3 26.296 52.712 3.364 1 68.33 ? C1' GTP 250 A 1 HETATM 22 N N9 GTP . . . G 3 25.983 51.27 3.441 1 67.04 ? N9 GTP 250 A 1 HETATM 23 C C8 GTP . . . G 3 25.09 50.624 2.684 1 68.14 ? C8 GTP 250 A 1 HETATM 24 N N7 GTP . . . G 3 25.04 49.341 3.046 1 68.45 ? N7 GTP 250 A 1 HETATM 25 C C5 GTP . . . G 3 25.903 49.167 4.047 1 70.56 ? C5 GTP 250 A 1 HETATM 26 C C6 GTP . . . G 3 26.258 48.05 4.801 1 68.93 ? C6 GTP 250 A 1 HETATM 27 O O6 GTP . . . G 3 25.735 46.957 4.573 1 66.64 ? O6 GTP 250 A 1 HETATM 28 N N1 GTP . . . G 3 27.225 48.204 5.815 1 68.28 ? N1 GTP 250 A 1 HETATM 29 C C2 GTP . . . G 3 27.802 49.473 6.036 1 68.39 ? C2 GTP 250 A 1 HETATM 30 N N2 GTP . . . G 3 28.721 49.633 6.99 1 67.94 ? N2 GTP 250 A 1 HETATM 31 N N3 GTP . . . G 3 27.427 50.525 5.283 1 66.09 ? N3 GTP 250 A 1 HETATM 32 C C4 GTP . . . G 3 26.504 50.4 4.307 1 67.26 ? C4 GTP 250 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 32 #