data_2A8S
#
_model_server_result.job_id            rkaAvIz5vhHxD3-fd6xzVQ 
_model_server_result.datetime_utc      '2024-12-01 02:14:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2a8s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":303}' 
#
_entry.id    2A8S 
#
_exptl.entry_id    2A8S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2A8S 
_cell.length_a            49.998 
_cell.length_b            82.553 
_cell.length_c            112.16 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2A8S 
_symmetry.cell_setting             orthorhombic 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LYS 119 A LYS 119 1_555 A N YCM 120 A YCM 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 A C YCM 120 A YCM 120 1_555 A N VAL 121 A VAL 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale3 A C LEU 173 A LEU 173 1_555 A N YCM 174 A YCM 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale4 A C YCM 174 A YCM 174 1_555 A N ASN 175 A ASN 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale5 B C LYS 119 B LYS 119 1_555 B N YCM 120 B YCM 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale6 B C YCM 120 B YCM 120 1_555 B N VAL 121 B VAL 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale7 B C LEU 173 B LEU 173 1_555 B N YCM 174 B YCM 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale8 B C YCM 174 B YCM 174 1_555 B N ASN 175 B ASN 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
metalc ? metalc1 A O GLY 72 A GLY 72 1_555 C MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc2 A OE2 GLU 89 A GLU 89 1_555 D MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc3 A OE1 GLU 89 A GLU 89 1_555 E MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc4 A OE2 GLU 93 A GLU 93 1_555 C MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc5 A OE2 GLU 93 A GLU 93 1_555 D MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc6 A OE1 GLU 150 A GLU 150 1_555 D MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc7 A OE2 GLU 150 A GLU 150 1_555 F MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc8 G O2B GTP . A GTP 250 1_555 C MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc9 G O1A GTP . A GTP 250 1_555 C MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc10 G O3G GTP . A GTP 250 1_555 D MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? 
metalc ? metalc11 G O2B GTP . A GTP 250 1_555 D MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
metalc ? metalc12 G O1G GTP . A GTP 250 1_555 E MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? 
metalc ? metalc13 G O3G GTP . A GTP 250 1_555 E MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc14 G PG GTP . A GTP 250 1_555 E MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc15 G O2G GTP . A GTP 250 1_555 F MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
metalc ? metalc16 G O3B GTP . A GTP 250 1_555 F MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc17 G O3G GTP . A GTP 250 1_555 F MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? 
metalc ? metalc18 G PG GTP . A GTP 250 1_555 F MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? 
metalc ? metalc19 B O GLY 72 B GLY 72 1_555 H MN MN . B MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc20 B OE2 GLU 89 B GLU 89 1_555 I MN MN . B MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc21 B OE2 GLU 89 B GLU 89 1_555 K MN MN . B MN 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? 
metalc ? metalc22 B OE1 GLU 89 B GLU 89 1_555 K MN MN . B MN 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc23 B OE2 GLU 92 B GLU 92 1_555 J MN MN . B MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? 
metalc ? metalc24 B OE2 GLU 93 B GLU 93 1_555 H MN MN . B MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc25 B OE2 GLU 93 B GLU 93 1_555 I MN MN . B MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
metalc ? metalc26 L O2B GTP . B GTP 251 1_555 H MN MN . B MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? 
metalc ? metalc27 L O1A GTP . B GTP 251 1_555 H MN MN . B MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc28 L O3G GTP . B GTP 251 1_555 I MN MN . B MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc29 L O2B GTP . B GTP 251 1_555 I MN MN . B MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc30 L O1G GTP . B GTP 251 1_555 K MN MN . B MN 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2A8S 
_atom_sites.fract_transf_matrix[1][1]    0.020001 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012113 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008916 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MN A 1 300 300 MN MN . 
D 2 MN A 1 301 301 MN MN . 
E 2 MN A 1 302 302 MN MN . 
F 2 MN A 1 303 303 MN MN . 
G 3 GTP A 1 250 250 GTP GTP . 
H 2 MN B 1 304 304 MN MN . 
I 2 MN B 1 305 305 MN MN . 
J 2 MN B 1 306 306 MN MN . 
K 2 MN B 1 307 307 MN MN . 
L 3 GTP B 1 251 251 GTP GTP . 
M 4 HOH A 1 508 508 HOH HOH . 
M 4 HOH A 2 509 509 HOH HOH . 
M 4 HOH A 3 519 519 HOH HOH . 
M 4 HOH A 4 527 527 HOH HOH . 
M 4 HOH A 5 531 531 HOH HOH . 
M 4 HOH A 6 539 539 HOH HOH . 
M 4 HOH A 7 551 551 HOH HOH . 
M 4 HOH A 8 574 574 HOH HOH . 
M 4 HOH A 9 579 579 HOH HOH . 
M 4 HOH A 10 583 583 HOH HOH . 
M 4 HOH A 11 584 584 HOH HOH . 
M 4 HOH A 12 605 605 HOH HOH . 
M 4 HOH A 13 615 615 HOH HOH . 
M 4 HOH A 14 622 622 HOH HOH . 
M 4 HOH A 15 628 628 HOH HOH . 
M 4 HOH A 16 639 639 HOH HOH . 
M 4 HOH A 17 640 640 HOH HOH . 
N 4 HOH B 1 501 501 HOH HOH . 
N 4 HOH B 2 503 503 HOH HOH . 
N 4 HOH B 3 504 504 HOH HOH . 
N 4 HOH B 4 505 505 HOH HOH . 
N 4 HOH B 5 506 506 HOH HOH . 
N 4 HOH B 6 510 510 HOH HOH . 
N 4 HOH B 7 511 511 HOH HOH . 
N 4 HOH B 8 513 513 HOH HOH . 
N 4 HOH B 9 517 517 HOH HOH . 
N 4 HOH B 10 518 518 HOH HOH . 
N 4 HOH B 11 525 525 HOH HOH . 
N 4 HOH B 12 529 529 HOH HOH . 
N 4 HOH B 13 535 535 HOH HOH . 
N 4 HOH B 14 536 536 HOH HOH . 
N 4 HOH B 15 537 537 HOH HOH . 
N 4 HOH B 16 542 542 HOH HOH . 
N 4 HOH B 17 545 545 HOH HOH . 
N 4 HOH B 18 547 547 HOH HOH . 
N 4 HOH B 19 550 550 HOH HOH . 
N 4 HOH B 20 560 560 HOH HOH . 
N 4 HOH B 21 569 569 HOH HOH . 
N 4 HOH B 22 581 581 HOH HOH . 
N 4 HOH B 23 590 590 HOH HOH . 
N 4 HOH B 24 599 599 HOH HOH . 
N 4 HOH B 25 600 600 HOH HOH . 
N 4 HOH B 26 607 607 HOH HOH . 
N 4 HOH B 27 612 612 HOH HOH . 
N 4 HOH B 28 619 619 HOH HOH . 
N 4 HOH B 29 630 630 HOH HOH . 
N 4 HOH B 30 631 631 HOH HOH . 
N 4 HOH B 31 633 633 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               16.735 
_atom_site.Cartn_y               55.052 
_atom_site.Cartn_z               -1.178 
_atom_site.occupancy             0.5 
_atom_site.B_iso_or_equiv        46.55 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           303 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#