data_2A8T
#
_model_server_result.job_id            lc2eGKfnPKvZAwZfP4v95A 
_model_server_result.datetime_utc      '2025-02-26 23:20:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2a8t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":252}' 
#
_entry.id    2A8T 
#
_exptl.entry_id    2A8T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              267.241 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ADENOSINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2A8T 
_cell.length_a            50.702 
_cell.length_b            81.71 
_cell.length_c            111.706 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2A8T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 G PG MGT . A MGT 251 1_555 H O5' ADN . A ADN 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.624 ? 
covale ? covale2 L PG MGT . B MGT 251 1_555 M O5' ADN . B ADN 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.616 ? 
metalc ? metalc1 A O GLY 72 A GLY 72 1_555 C MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc2 A OE2 GLU 89 A GLU 89 1_555 D MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc3 A OE1 GLU 89 A GLU 89 1_555 E MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc4 A OE2 GLU 93 A GLU 93 1_555 C MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc5 A OE2 GLU 93 A GLU 93 1_555 D MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc6 A OE1 GLU 150 A GLU 150 1_555 D MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc7 A OE2 GLU 150 A GLU 150 1_555 F MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc8 G O3G MGT . A MGT 251 1_555 C MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc9 G O2B MGT . A MGT 251 1_555 C MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc10 G O2B MGT . A MGT 251 1_555 D MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc11 G O1B MGT . A MGT 251 1_555 E MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc12 G O3A MGT . A MGT 251 1_555 F MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc13 C MN MN . A MN 300 1_555 N O HOH . A HOH 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc14 D MN MN . A MN 301 1_555 N O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc15 B O GLY 72 B GLY 72 1_555 I MN MN . B MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc16 B OE2 GLU 89 B GLU 89 1_555 J MN MN . B MN 305 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc17 B OE2 GLU 89 B GLU 89 1_555 J MN MN . B MN 305 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc18 B OE2 GLU 93 B GLU 93 1_555 I MN MN . B MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc19 B OE2 GLU 93 B GLU 93 1_555 J MN MN . B MN 305 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc20 B OD2 ASP 146 B ASP 146 1_555 J MN MN . B MN 305 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc21 B OE1 GLU 150 B GLU 150 1_555 J MN MN . B MN 305 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc22 B OE2 GLU 150 B GLU 150 1_555 K MN MN . B MN 306 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc23 L O2B MGT . B MGT 251 1_555 I MN MN . B MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc24 L O3G MGT . B MGT 251 1_555 I MN MN . B MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc25 L O2B MGT . B MGT 251 1_555 J MN MN . B MN 305 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc26 L O3A MGT . B MGT 251 1_555 K MN MN . B MN 306 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc27 L O1B MGT . B MGT 251 1_555 K MN MN . B MN 306 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc28 I MN MN . B MN 304 1_555 O O HOH . B HOH 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? 
#
_chem_comp.formula           'C10 H13 N5 O4' 
_chem_comp.formula_weight    267.241 
_chem_comp.id                ADN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ADENOSINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5' C5' ADN sing 1 n n 
O5' HO5' ADN sing 2 n n 
C5' C4' ADN sing 3 n n 
C5' "H5'1" ADN sing 4 n n 
C5' "H5'2" ADN sing 5 n n 
C4' O4' ADN sing 6 n n 
C4' C3' ADN sing 7 n n 
C4' H4' ADN sing 8 n n 
O4' C1' ADN sing 9 n n 
C3' O3' ADN sing 10 n n 
C3' C2' ADN sing 11 n n 
C3' H3' ADN sing 12 n n 
O3' HO3' ADN sing 13 n n 
C2' O2' ADN sing 14 n n 
C2' C1' ADN sing 15 n n 
C2' H2' ADN sing 16 n n 
O2' HO2' ADN sing 17 n n 
C1' N9 ADN sing 18 n n 
C1' H1' ADN sing 19 n n 
N9 C8 ADN sing 20 n y 
N9 C4 ADN sing 21 n y 
C8 N7 ADN doub 22 n y 
C8 H8 ADN sing 23 n n 
N7 C5 ADN sing 24 n y 
C5 C6 ADN sing 25 n y 
C5 C4 ADN doub 26 n y 
C6 N6 ADN sing 27 n n 
C6 N1 ADN doub 28 n y 
N6 HN61 ADN sing 29 n n 
N6 HN62 ADN sing 30 n n 
N1 C2 ADN sing 31 n y 
C2 N3 ADN doub 32 n y 
C2 H2 ADN sing 33 n n 
N3 C4 ADN sing 34 n y 
#
_atom_sites.entry_id                     2A8T 
_atom_sites.fract_transf_matrix[1][1]    0.019723 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012238 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008952 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MN A 1 300 300 MN MN . 
D 2 MN A 1 301 301 MN MN . 
E 2 MN A 1 302 302 MN MN . 
F 2 MN A 1 303 303 MN MN . 
G 3 MGT A 1 251 251 MGT MGT . 
H 4 ADN A 1 252 252 ADN ADN . 
I 2 MN B 1 304 304 MN MN . 
J 2 MN B 1 305 305 MN MN . 
K 2 MN B 1 306 306 MN MN . 
L 3 MGT B 1 251 251 MGT MGT . 
M 4 ADN B 1 252 252 ADN ADN . 
N 5 HOH A 1 502 502 HOH HOH . 
N 5 HOH A 2 505 505 HOH HOH . 
N 5 HOH A 3 506 506 HOH HOH . 
N 5 HOH A 4 507 507 HOH HOH . 
N 5 HOH A 5 510 510 HOH HOH . 
N 5 HOH A 6 511 511 HOH HOH . 
N 5 HOH A 7 517 517 HOH HOH . 
N 5 HOH A 8 521 521 HOH HOH . 
N 5 HOH A 9 523 523 HOH HOH . 
N 5 HOH A 10 533 533 HOH HOH . 
N 5 HOH A 11 535 535 HOH HOH . 
N 5 HOH A 12 538 538 HOH HOH . 
N 5 HOH A 13 543 543 HOH HOH . 
N 5 HOH A 14 551 551 HOH HOH . 
N 5 HOH A 15 553 553 HOH HOH . 
N 5 HOH A 16 556 556 HOH HOH . 
N 5 HOH A 17 562 562 HOH HOH . 
N 5 HOH A 18 581 581 HOH HOH . 
N 5 HOH A 19 601 601 HOH HOH . 
N 5 HOH A 20 604 604 HOH HOH . 
N 5 HOH A 21 620 620 HOH HOH . 
N 5 HOH A 22 626 626 HOH HOH . 
N 5 HOH A 23 627 627 HOH HOH . 
N 5 HOH A 24 633 633 HOH HOH . 
N 5 HOH A 25 637 637 HOH HOH . 
N 5 HOH A 26 638 638 HOH HOH . 
N 5 HOH A 27 639 639 HOH HOH . 
N 5 HOH A 28 640 640 HOH HOH . 
N 5 HOH A 29 641 641 HOH HOH . 
N 5 HOH A 30 642 642 HOH HOH . 
O 5 HOH B 1 500 500 HOH HOH . 
O 5 HOH B 2 501 501 HOH HOH . 
O 5 HOH B 3 503 503 HOH HOH . 
O 5 HOH B 4 508 508 HOH HOH . 
O 5 HOH B 5 509 509 HOH HOH . 
O 5 HOH B 6 512 512 HOH HOH . 
O 5 HOH B 7 513 513 HOH HOH . 
O 5 HOH B 8 514 514 HOH HOH . 
O 5 HOH B 9 515 515 HOH HOH . 
O 5 HOH B 10 516 516 HOH HOH . 
O 5 HOH B 11 518 518 HOH HOH . 
O 5 HOH B 12 519 519 HOH HOH . 
O 5 HOH B 13 522 522 HOH HOH . 
O 5 HOH B 14 524 524 HOH HOH . 
O 5 HOH B 15 525 525 HOH HOH . 
O 5 HOH B 16 526 526 HOH HOH . 
O 5 HOH B 17 527 527 HOH HOH . 
O 5 HOH B 18 528 528 HOH HOH . 
O 5 HOH B 19 529 529 HOH HOH . 
O 5 HOH B 20 531 531 HOH HOH . 
O 5 HOH B 21 532 532 HOH HOH . 
O 5 HOH B 22 536 536 HOH HOH . 
O 5 HOH B 23 539 539 HOH HOH . 
O 5 HOH B 24 540 540 HOH HOH . 
O 5 HOH B 25 541 541 HOH HOH . 
O 5 HOH B 26 545 545 HOH HOH . 
O 5 HOH B 27 546 546 HOH HOH . 
O 5 HOH B 28 547 547 HOH HOH . 
O 5 HOH B 29 549 549 HOH HOH . 
O 5 HOH B 30 550 550 HOH HOH . 
O 5 HOH B 31 552 552 HOH HOH . 
O 5 HOH B 32 554 554 HOH HOH . 
O 5 HOH B 33 555 555 HOH HOH . 
O 5 HOH B 34 558 558 HOH HOH . 
O 5 HOH B 35 563 563 HOH HOH . 
O 5 HOH B 36 564 564 HOH HOH . 
O 5 HOH B 37 568 568 HOH HOH . 
O 5 HOH B 38 574 574 HOH HOH . 
O 5 HOH B 39 576 576 HOH HOH . 
O 5 HOH B 40 583 583 HOH HOH . 
O 5 HOH B 41 589 589 HOH HOH . 
O 5 HOH B 42 594 594 HOH HOH . 
O 5 HOH B 43 602 602 HOH HOH . 
O 5 HOH B 44 606 606 HOH HOH . 
O 5 HOH B 45 607 607 HOH HOH . 
O 5 HOH B 46 609 609 HOH HOH . 
O 5 HOH B 47 615 615 HOH HOH . 
O 5 HOH B 48 618 618 HOH HOH . 
O 5 HOH B 49 619 619 HOH HOH . 
O 5 HOH B 50 623 623 HOH HOH . 
O 5 HOH B 51 628 628 HOH HOH . 
O 5 HOH B 52 629 629 HOH HOH . 
O 5 HOH B 53 630 630 HOH HOH . 
O 5 HOH B 54 631 631 HOH HOH . 
O 5 HOH B 55 632 632 HOH HOH . 
O 5 HOH B 56 635 635 HOH HOH . 
O 5 HOH B 57 636 636 HOH HOH . 
O 5 HOH B 58 643 643 HOH HOH . 
O 5 HOH B 59 644 644 HOH HOH . 
O 5 HOH B 60 645 645 HOH HOH . 
O 5 HOH B 61 646 646 HOH HOH . 
O 5 HOH B 62 647 647 HOH HOH . 
O 5 HOH B 63 648 648 HOH HOH . 
O 5 HOH B 64 649 649 HOH HOH . 
O 5 HOH B 65 650 650 HOH HOH . 
O 5 HOH B 66 651 651 HOH HOH . 
O 5 HOH B 67 652 652 HOH HOH . 
O 5 HOH B 68 653 653 HOH HOH . 
O 5 HOH B 69 654 654 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' ADN . . . M 4 29.604 23.834 -14.179 0.5 55.61 ? O5' ADN 252 B 1 
HETATM 2 C C5' ADN . . . M 4 30.808 23.087 -14.397 0.5 65.29 ? C5' ADN 252 B 1 
HETATM 3 C C4' ADN . . . M 4 32.002 23.996 -14.702 0.5 66.45 ? C4' ADN 252 B 1 
HETATM 4 O O4' ADN . . . M 4 31.589 25.012 -15.628 0.5 66.28 ? O4' ADN 252 B 1 
HETATM 5 C C3' ADN . . . M 4 32.358 24.795 -13.448 0.5 68.31 ? C3' ADN 252 B 1 
HETATM 6 O O3' ADN . . . M 4 33.316 24.066 -12.669 0.5 71.66 ? O3' ADN 252 B 1 
HETATM 7 C C2' ADN . . . M 4 32.959 26.089 -14.016 0.5 67.68 ? C2' ADN 252 B 1 
HETATM 8 O O2' ADN . . . M 4 34.387 26.075 -13.869 0.5 69.01 ? O2' ADN 252 B 1 
HETATM 9 C C1' ADN . . . M 4 32.595 26.054 -15.51 0.5 64.42 ? C1' ADN 252 B 1 
HETATM 10 N N9 ADN . . . M 4 31.965 27.267 -16.106 0.5 63.53 ? N9 ADN 252 B 1 
HETATM 11 C C8 ADN . . . M 4 32.378 27.87 -17.225 0.5 61.06 ? C8 ADN 252 B 1 
HETATM 12 N N7 ADN . . . M 4 31.589 28.91 -17.502 0.5 55.59 ? N7 ADN 252 B 1 
HETATM 13 C C5 ADN . . . M 4 30.659 28.965 -16.555 0.5 64.34 ? C5 ADN 252 B 1 
HETATM 14 C C6 ADN . . . M 4 29.584 29.818 -16.313 0.5 60.94 ? C6 ADN 252 B 1 
HETATM 15 N N6 ADN . . . M 4 29.331 30.815 -17.134 0.5 65.45 ? N6 ADN 252 B 1 
HETATM 16 N N1 ADN . . . M 4 28.806 29.618 -15.244 0.5 58.65 ? N1 ADN 252 B 1 
HETATM 17 C C2 ADN . . . M 4 29.05 28.601 -14.414 0.5 60.28 ? C2 ADN 252 B 1 
HETATM 18 N N3 ADN . . . M 4 30.068 27.764 -14.609 0.5 64.2 ? N3 ADN 252 B 1 
HETATM 19 C C4 ADN . . . M 4 30.889 27.919 -15.667 0.5 61.5 ? C4 ADN 252 B 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           214 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           19 
#