data_2A98 # _model_server_result.job_id VC30zTtlWo3PhqwsYIWIbw _model_server_result.datetime_utc '2025-01-02 22:48:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a98 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 2A98 # _exptl.entry_id 2A98 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 420.096 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2A98 _cell.length_a 87.72 _cell.length_b 87.72 _cell.length_c 174.94 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A98 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H15 O15 P3' _chem_comp.formula_weight 420.096 _chem_comp.id I3P _chem_comp.mon_nstd_flag . _chem_comp.name D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 I3P sing 150 n n C1 C6 I3P sing 151 n n C1 O1 I3P sing 152 n n C1 H1 I3P sing 153 n n C2 C3 I3P sing 154 n n C2 O2 I3P sing 155 n n C2 H2 I3P sing 156 n n C3 C4 I3P sing 157 n n C3 O3 I3P sing 158 n n C3 H3 I3P sing 159 n n C4 C5 I3P sing 160 n n C4 O4 I3P sing 161 n n C4 H4 I3P sing 162 n n C5 C6 I3P sing 163 n n C5 O5 I3P sing 164 n n C5 H5 I3P sing 165 n n C6 O6 I3P sing 166 n n C6 H6 I3P sing 167 n n O1 P1 I3P sing 168 n n O2 HO2 I3P sing 169 n n O3 HO3 I3P sing 170 n n O4 P4 I3P sing 171 n n O5 P5 I3P sing 172 n n O6 HO6 I3P sing 173 n n P1 O11 I3P doub 174 n n P1 O12 I3P sing 175 n n P1 O13 I3P sing 176 n n O12 HO12 I3P sing 177 n n O13 HO13 I3P sing 178 n n P4 O41 I3P doub 179 n n P4 O42 I3P sing 180 n n P4 O43 I3P sing 181 n n O42 HO42 I3P sing 182 n n O43 HO43 I3P sing 183 n n P5 O51 I3P doub 184 n n P5 O52 I3P sing 185 n n P5 O53 I3P sing 186 n n O52 HO52 I3P sing 187 n n O53 HO53 I3P sing 188 n n # _atom_sites.entry_id 2A98 _atom_sites.fract_transf_matrix[1][1] 0.0114 _atom_sites.fract_transf_matrix[1][2] 0.00658 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01316 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00572 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id I3P _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id I3P _pdbx_nonpoly_scheme.auth_mon_id I3P _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I3P . . . B 2 2.704 33.812 11.536 1 53.22 ? C1 I3P 1 A 1 HETATM 2 C C2 I3P . . . B 2 2.292 33.879 10.067 1 53.02 ? C2 I3P 1 A 1 HETATM 3 C C3 I3P . . . B 2 3.465 34.059 9.1 1 52.95 ? C3 I3P 1 A 1 HETATM 4 C C4 I3P . . . B 2 4.458 32.897 9.271 1 54.71 ? C4 I3P 1 A 1 HETATM 5 C C5 I3P . . . B 2 4.947 32.912 10.731 1 55.17 ? C5 I3P 1 A 1 HETATM 6 C C6 I3P . . . B 2 3.827 32.805 11.778 1 55.19 ? C6 I3P 1 A 1 HETATM 7 O O1 I3P . . . B 2 1.607 33.292 12.292 1 54.81 ? O1 I3P 1 A 1 HETATM 8 O O2 I3P . . . B 2 1.577 32.671 9.739 1 54.61 ? O2 I3P 1 A 1 HETATM 9 O O3 I3P . . . B 2 2.96 34.115 7.766 1 50.67 ? O3 I3P 1 A 1 HETATM 10 O O4 I3P . . . B 2 5.535 33.02 8.321 1 54.9 ? O4 I3P 1 A 1 HETATM 11 O O5 I3P . . . B 2 5.92 31.92 10.997 1 56.45 ? O5 I3P 1 A 1 HETATM 12 O O6 I3P . . . B 2 4.354 33.018 13.106 1 54.15 ? O6 I3P 1 A 1 HETATM 13 P P1 I3P . . . B 2 0.395 34.26 12.814 1 53.39 ? P1 I3P 1 A 1 HETATM 14 O O11 I3P . . . B 2 -0.13 34.794 11.465 1 52.41 ? O11 I3P 1 A 1 HETATM 15 O O12 I3P . . . B 2 1.029 35.258 13.755 1 48.85 ? O12 I3P 1 A 1 HETATM 16 O O13 I3P . . . B 2 -0.543 33.355 13.562 1 51.47 ? O13 I3P 1 A 1 HETATM 17 P P4 I3P . . . B 2 5.611 32.126 6.958 1 54.45 ? P4 I3P 1 A 1 HETATM 18 O O41 I3P . . . B 2 6.559 32.884 6.048 1 57.14 ? O41 I3P 1 A 1 HETATM 19 O O42 I3P . . . B 2 4.174 32.054 6.421 1 56.89 ? O42 I3P 1 A 1 HETATM 20 O O43 I3P . . . B 2 6.152 30.777 7.425 1 57.5 ? O43 I3P 1 A 1 HETATM 21 P P5 I3P . . . B 2 7.274 32.296 11.835 1 56.62 ? P5 I3P 1 A 1 HETATM 22 O O51 I3P . . . B 2 8.007 33.15 10.817 1 57.15 ? O51 I3P 1 A 1 HETATM 23 O O52 I3P . . . B 2 7.89 30.928 12.061 1 59.8 ? O52 I3P 1 A 1 HETATM 24 O O53 I3P . . . B 2 6.947 32.955 13.161 1 54.21 ? O53 I3P 1 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #