data_2A9K # _model_server_result.job_id '_A8_W2wWHnv1yI1I1hw1gQ' _model_server_result.datetime_utc '2024-11-14 21:46:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2a9k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 2A9K # _exptl.entry_id 2A9K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.4 _cell.angle_gamma 90 _cell.entry_id 2A9K _cell.length_a 35.26 _cell.length_b 113.85 _cell.length_c 56.31 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A9K _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 32 A SER 28 1_555 C MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc2 C MG MG . A MG 300 1_555 D O3B GDP . A GDP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc3 C MG MG . A MG 300 1_555 F O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc4 C MG MG . A MG 300 1_555 F O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc5 C MG MG . A MG 300 1_555 F O HOH . A HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc6 C MG MG . A MG 300 1_555 F O HOH . A HOH 593 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2A9K _atom_sites.fract_transf_matrix[1][1] 0.028361 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008347 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008783 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018512 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 300 300 MG MG . D 4 GDP A 1 500 500 GDP GDP . E 5 NAD B 1 400 400 NAD NAD . F 6 HOH A 1 501 3 HOH HOH . F 6 HOH A 2 502 7 HOH HOH . F 6 HOH A 3 503 10 HOH HOH . F 6 HOH A 4 504 11 HOH HOH . F 6 HOH A 5 505 12 HOH HOH . F 6 HOH A 6 506 14 HOH HOH . F 6 HOH A 7 507 17 HOH HOH . F 6 HOH A 8 508 18 HOH HOH . F 6 HOH A 9 509 21 HOH HOH . F 6 HOH A 10 510 25 HOH HOH . F 6 HOH A 11 511 27 HOH HOH . F 6 HOH A 12 512 32 HOH HOH . F 6 HOH A 13 513 33 HOH HOH . F 6 HOH A 14 514 34 HOH HOH . F 6 HOH A 15 515 35 HOH HOH . F 6 HOH A 16 516 36 HOH HOH . F 6 HOH A 17 517 37 HOH HOH . F 6 HOH A 18 518 38 HOH HOH . F 6 HOH A 19 519 39 HOH HOH . F 6 HOH A 20 520 42 HOH HOH . F 6 HOH A 21 521 44 HOH HOH . F 6 HOH A 22 522 47 HOH HOH . F 6 HOH A 23 523 52 HOH HOH . F 6 HOH A 24 524 55 HOH HOH . F 6 HOH A 25 525 56 HOH HOH . F 6 HOH A 26 526 58 HOH HOH . F 6 HOH A 27 527 59 HOH HOH . F 6 HOH A 28 528 61 HOH HOH . F 6 HOH A 29 529 65 HOH HOH . F 6 HOH A 30 530 66 HOH HOH . F 6 HOH A 31 531 67 HOH HOH . F 6 HOH A 32 532 71 HOH HOH . F 6 HOH A 33 533 72 HOH HOH . F 6 HOH A 34 534 74 HOH HOH . F 6 HOH A 35 535 75 HOH HOH . F 6 HOH A 36 536 77 HOH HOH . F 6 HOH A 37 537 78 HOH HOH . F 6 HOH A 38 538 81 HOH HOH . F 6 HOH A 39 539 83 HOH HOH . F 6 HOH A 40 540 86 HOH HOH . F 6 HOH A 41 541 87 HOH HOH . F 6 HOH A 42 542 88 HOH HOH . F 6 HOH A 43 543 90 HOH HOH . F 6 HOH A 44 544 92 HOH HOH . F 6 HOH A 45 545 94 HOH HOH . F 6 HOH A 46 546 98 HOH HOH . F 6 HOH A 47 547 99 HOH HOH . F 6 HOH A 48 548 102 HOH HOH . F 6 HOH A 49 549 107 HOH HOH . F 6 HOH A 50 550 108 HOH HOH . F 6 HOH A 51 551 109 HOH HOH . F 6 HOH A 52 552 110 HOH HOH . F 6 HOH A 53 553 113 HOH HOH . F 6 HOH A 54 554 116 HOH HOH . F 6 HOH A 55 555 119 HOH HOH . F 6 HOH A 56 556 122 HOH HOH . F 6 HOH A 57 557 123 HOH HOH . F 6 HOH A 58 558 124 HOH HOH . F 6 HOH A 59 559 125 HOH HOH . F 6 HOH A 60 560 126 HOH HOH . F 6 HOH A 61 561 129 HOH HOH . F 6 HOH A 62 562 133 HOH HOH . F 6 HOH A 63 563 135 HOH HOH . F 6 HOH A 64 564 138 HOH HOH . F 6 HOH A 65 565 139 HOH HOH . F 6 HOH A 66 566 143 HOH HOH . F 6 HOH A 67 567 144 HOH HOH . F 6 HOH A 68 568 145 HOH HOH . F 6 HOH A 69 569 147 HOH HOH . F 6 HOH A 70 570 148 HOH HOH . F 6 HOH A 71 571 149 HOH HOH . F 6 HOH A 72 572 152 HOH HOH . F 6 HOH A 73 573 154 HOH HOH . F 6 HOH A 74 574 163 HOH HOH . F 6 HOH A 75 575 165 HOH HOH . F 6 HOH A 76 576 169 HOH HOH . F 6 HOH A 77 577 170 HOH HOH . F 6 HOH A 78 578 171 HOH HOH . F 6 HOH A 79 579 172 HOH HOH . F 6 HOH A 80 580 176 HOH HOH . F 6 HOH A 81 581 179 HOH HOH . F 6 HOH A 82 582 181 HOH HOH . F 6 HOH A 83 583 183 HOH HOH . F 6 HOH A 84 584 184 HOH HOH . F 6 HOH A 85 585 185 HOH HOH . F 6 HOH A 86 586 186 HOH HOH . F 6 HOH A 87 587 187 HOH HOH . F 6 HOH A 88 588 191 HOH HOH . F 6 HOH A 89 589 193 HOH HOH . F 6 HOH A 90 590 202 HOH HOH . F 6 HOH A 91 591 204 HOH HOH . F 6 HOH A 92 592 206 HOH HOH . F 6 HOH A 93 593 207 HOH HOH . F 6 HOH A 94 594 214 HOH HOH . F 6 HOH A 95 595 216 HOH HOH . F 6 HOH A 96 596 217 HOH HOH . F 6 HOH A 97 597 219 HOH HOH . F 6 HOH A 98 598 220 HOH HOH . F 6 HOH A 99 599 224 HOH HOH . F 6 HOH A 100 600 226 HOH HOH . G 6 HOH B 1 401 4 HOH HOH . G 6 HOH B 2 402 6 HOH HOH . G 6 HOH B 3 403 8 HOH HOH . G 6 HOH B 4 404 9 HOH HOH . G 6 HOH B 5 405 13 HOH HOH . G 6 HOH B 6 406 15 HOH HOH . G 6 HOH B 7 407 16 HOH HOH . G 6 HOH B 8 408 22 HOH HOH . G 6 HOH B 9 409 23 HOH HOH . G 6 HOH B 10 410 24 HOH HOH . G 6 HOH B 11 411 28 HOH HOH . G 6 HOH B 12 412 29 HOH HOH . G 6 HOH B 13 413 30 HOH HOH . G 6 HOH B 14 414 31 HOH HOH . G 6 HOH B 15 415 43 HOH HOH . G 6 HOH B 16 416 46 HOH HOH . G 6 HOH B 17 417 48 HOH HOH . G 6 HOH B 18 418 49 HOH HOH . G 6 HOH B 19 419 51 HOH HOH . G 6 HOH B 20 420 53 HOH HOH . G 6 HOH B 21 421 54 HOH HOH . G 6 HOH B 22 422 62 HOH HOH . G 6 HOH B 23 423 63 HOH HOH . G 6 HOH B 24 424 64 HOH HOH . G 6 HOH B 25 425 68 HOH HOH . G 6 HOH B 26 426 69 HOH HOH . G 6 HOH B 27 427 70 HOH HOH . G 6 HOH B 28 428 73 HOH HOH . G 6 HOH B 29 429 76 HOH HOH . G 6 HOH B 30 430 79 HOH HOH . G 6 HOH B 31 431 80 HOH HOH . G 6 HOH B 32 432 82 HOH HOH . G 6 HOH B 33 433 84 HOH HOH . G 6 HOH B 34 434 85 HOH HOH . G 6 HOH B 35 435 89 HOH HOH . G 6 HOH B 36 436 91 HOH HOH . G 6 HOH B 37 437 93 HOH HOH . G 6 HOH B 38 438 95 HOH HOH . G 6 HOH B 39 439 97 HOH HOH . G 6 HOH B 40 440 100 HOH HOH . G 6 HOH B 41 441 101 HOH HOH . G 6 HOH B 42 442 103 HOH HOH . G 6 HOH B 43 443 104 HOH HOH . G 6 HOH B 44 444 105 HOH HOH . G 6 HOH B 45 445 106 HOH HOH . G 6 HOH B 46 446 112 HOH HOH . G 6 HOH B 47 447 114 HOH HOH . G 6 HOH B 48 448 115 HOH HOH . G 6 HOH B 49 449 117 HOH HOH . G 6 HOH B 50 450 118 HOH HOH . G 6 HOH B 51 451 120 HOH HOH . G 6 HOH B 52 452 121 HOH HOH . G 6 HOH B 53 453 127 HOH HOH . G 6 HOH B 54 454 128 HOH HOH . G 6 HOH B 55 455 130 HOH HOH . G 6 HOH B 56 456 131 HOH HOH . G 6 HOH B 57 457 132 HOH HOH . G 6 HOH B 58 458 134 HOH HOH . G 6 HOH B 59 459 136 HOH HOH . G 6 HOH B 60 460 137 HOH HOH . G 6 HOH B 61 461 140 HOH HOH . G 6 HOH B 62 462 141 HOH HOH . G 6 HOH B 63 463 142 HOH HOH . G 6 HOH B 64 464 146 HOH HOH . G 6 HOH B 65 465 150 HOH HOH . G 6 HOH B 66 466 151 HOH HOH . G 6 HOH B 67 467 153 HOH HOH . G 6 HOH B 68 468 155 HOH HOH . G 6 HOH B 69 469 156 HOH HOH . G 6 HOH B 70 470 157 HOH HOH . G 6 HOH B 71 471 158 HOH HOH . G 6 HOH B 72 472 159 HOH HOH . G 6 HOH B 73 473 160 HOH HOH . G 6 HOH B 74 474 161 HOH HOH . G 6 HOH B 75 475 162 HOH HOH . G 6 HOH B 76 476 164 HOH HOH . G 6 HOH B 77 477 166 HOH HOH . G 6 HOH B 78 478 167 HOH HOH . G 6 HOH B 79 479 168 HOH HOH . G 6 HOH B 80 480 173 HOH HOH . G 6 HOH B 81 481 174 HOH HOH . G 6 HOH B 82 482 175 HOH HOH . G 6 HOH B 83 483 177 HOH HOH . G 6 HOH B 84 484 178 HOH HOH . G 6 HOH B 85 485 180 HOH HOH . G 6 HOH B 86 486 182 HOH HOH . G 6 HOH B 87 487 188 HOH HOH . G 6 HOH B 88 488 189 HOH HOH . G 6 HOH B 89 489 192 HOH HOH . G 6 HOH B 90 490 194 HOH HOH . G 6 HOH B 91 491 195 HOH HOH . G 6 HOH B 92 492 196 HOH HOH . G 6 HOH B 93 493 197 HOH HOH . G 6 HOH B 94 494 199 HOH HOH . G 6 HOH B 95 495 200 HOH HOH . G 6 HOH B 96 496 201 HOH HOH . G 6 HOH B 97 497 203 HOH HOH . G 6 HOH B 98 498 205 HOH HOH . G 6 HOH B 99 499 208 HOH HOH . G 6 HOH B 100 500 209 HOH HOH . G 6 HOH B 101 501 210 HOH HOH . G 6 HOH B 102 502 211 HOH HOH . G 6 HOH B 103 503 212 HOH HOH . G 6 HOH B 104 504 213 HOH HOH . G 6 HOH B 105 505 215 HOH HOH . G 6 HOH B 106 506 218 HOH HOH . G 6 HOH B 107 507 221 HOH HOH . G 6 HOH B 108 508 222 HOH HOH . G 6 HOH B 109 509 223 HOH HOH . G 6 HOH B 110 510 225 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 17.905 _atom_site.Cartn_y 8.982 _atom_site.Cartn_z 12.577 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.98 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 300 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #