data_2A9P
#
_model_server_result.job_id            NVbKzjhKUdZzLOCbS3R8_A 
_model_server_result.datetime_utc      '2025-03-04 17:04:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2a9p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    2A9P 
#
_exptl.entry_id    2A9P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              66.007 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BERYLLIUM TRIFLUORIDE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2A9P 
_cell.length_a            74.705 
_cell.length_b            93.404 
_cell.length_c            37.611 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 2A9P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 9 A ASP 9 1_555 B MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc2 A OD1 ASP 52 A ASP 52 1_555 C BE BEF . A BEF 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.566 ? 
metalc ? metalc3 A OD2 ASP 52 A ASP 52 1_555 B MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc4 A O MET 54 A MET 54 1_555 B MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc5 C F3 BEF . A BEF 201 1_555 B MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc6 B MN MN . A MN 202 1_555 D O HOH . A HOH 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc7 B MN MN . A MN 202 1_555 D O HOH . A HOH 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? 
#
_chem_comp.formula           'Be F3 -1' 
_chem_comp.formula_weight    66.007 
_chem_comp.id                BEF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BERYLLIUM TRIFLUORIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
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loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
BE F1 BEF sing 70 n n 
BE F2 BEF sing 71 n n 
BE F3 BEF sing 72 n n 
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_atom_sites.entry_id                     2A9P 
_atom_sites.fract_transf_matrix[1][1]    0.013386 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010706 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026588 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 202 202 MN MN . 
C 3 BEF A 1 201 201 BEF BEF . 
D 4 HOH A 1 203 4 HOH HOH . 
D 4 HOH A 2 204 5 HOH HOH . 
D 4 HOH A 3 205 6 HOH HOH . 
D 4 HOH A 4 206 7 HOH HOH . 
D 4 HOH A 5 207 8 HOH HOH . 
D 4 HOH A 6 208 9 HOH HOH . 
D 4 HOH A 7 209 10 HOH HOH . 
D 4 HOH A 8 210 11 HOH HOH . 
D 4 HOH A 9 211 12 HOH HOH . 
D 4 HOH A 10 212 13 HOH HOH . 
D 4 HOH A 11 213 14 HOH HOH . 
D 4 HOH A 12 214 15 HOH HOH . 
D 4 HOH A 13 215 16 HOH HOH . 
D 4 HOH A 14 216 17 HOH HOH . 
D 4 HOH A 15 217 18 HOH HOH . 
D 4 HOH A 16 218 19 HOH HOH . 
D 4 HOH A 17 219 20 HOH HOH . 
D 4 HOH A 18 220 21 HOH HOH . 
D 4 HOH A 19 221 22 HOH HOH . 
D 4 HOH A 20 222 23 HOH HOH . 
D 4 HOH A 21 223 24 HOH HOH . 
D 4 HOH A 22 224 25 HOH HOH . 
D 4 HOH A 23 225 26 HOH HOH . 
D 4 HOH A 24 226 27 HOH HOH . 
D 4 HOH A 25 227 28 HOH HOH . 
D 4 HOH A 26 228 29 HOH HOH . 
D 4 HOH A 27 229 30 HOH HOH . 
D 4 HOH A 28 230 31 HOH HOH . 
D 4 HOH A 29 231 32 HOH HOH . 
D 4 HOH A 30 232 33 HOH HOH . 
D 4 HOH A 31 233 34 HOH HOH . 
D 4 HOH A 32 234 35 HOH HOH . 
D 4 HOH A 33 235 36 HOH HOH . 
D 4 HOH A 34 236 37 HOH HOH . 
D 4 HOH A 35 237 39 HOH HOH . 
D 4 HOH A 36 238 40 HOH HOH . 
D 4 HOH A 37 239 41 HOH HOH . 
D 4 HOH A 38 240 42 HOH HOH . 
D 4 HOH A 39 241 43 HOH HOH . 
D 4 HOH A 40 242 44 HOH HOH . 
D 4 HOH A 41 243 45 HOH HOH . 
D 4 HOH A 42 244 46 HOH HOH . 
D 4 HOH A 43 245 47 HOH HOH . 
D 4 HOH A 44 246 48 HOH HOH . 
D 4 HOH A 45 247 49 HOH HOH . 
D 4 HOH A 46 248 50 HOH HOH . 
D 4 HOH A 47 249 51 HOH HOH . 
D 4 HOH A 48 250 52 HOH HOH . 
D 4 HOH A 49 251 53 HOH HOH . 
D 4 HOH A 50 252 54 HOH HOH . 
D 4 HOH A 51 253 55 HOH HOH . 
D 4 HOH A 52 254 56 HOH HOH . 
D 4 HOH A 53 255 57 HOH HOH . 
D 4 HOH A 54 256 59 HOH HOH . 
D 4 HOH A 55 257 60 HOH HOH . 
D 4 HOH A 56 258 61 HOH HOH . 
D 4 HOH A 57 259 65 HOH HOH . 
D 4 HOH A 58 260 66 HOH HOH . 
D 4 HOH A 59 261 67 HOH HOH . 
D 4 HOH A 60 262 70 HOH HOH . 
D 4 HOH A 61 263 71 HOH HOH . 
D 4 HOH A 62 264 74 HOH HOH . 
D 4 HOH A 63 265 78 HOH HOH . 
D 4 HOH A 64 266 81 HOH HOH . 
D 4 HOH A 65 267 82 HOH HOH . 
D 4 HOH A 66 268 84 HOH HOH . 
D 4 HOH A 67 269 85 HOH HOH . 
D 4 HOH A 68 270 93 HOH HOH . 
D 4 HOH A 69 271 95 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 BE BE BEF . . . C 3 5.194 35.238 9.732 1 23.14 ? BE BEF 201 A 1 
HETATM 2 F F1 BEF . . . C 3 5.677 36.549 10.715 1 26.69 ? F1 BEF 201 A 1 
HETATM 3 F F2 BEF . . . C 3 4.048 35.583 8.515 1 23.77 ? F2 BEF 201 A 1 
HETATM 4 F F3 BEF . . . C 3 4.439 34.074 10.706 1 26.63 ? F3 BEF 201 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
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